RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 PRRT2Q7Z6L0 340 aaPredicted RBP17.02■□□□□ 0.32
USP4-206ENST00000461553 ADGRA1Q86SQ6 560 aa17.02■□□□□ 0.32
USP4-206ENST00000461553 RHPN1Q8TCX5 695 aa17.02■□□□□ 0.32
USP4-206ENST00000461553 IL1RAPL2Q9NP60 686 aa17.02■□□□□ 0.32
USP4-206ENST00000461553 ADGRA2Q96PE1 1338 aa17.01■□□□□ 0.31
USP4-206ENST00000461553 CAP1Q01518 475 aa17.01■□□□□ 0.31
USP4-206ENST00000461553 MOGSQ13724 837 aa17.01■□□□□ 0.31
USP4-206ENST00000461553 GADL1Q6ZQY3 521 aa17.01■□□□□ 0.31
USP4-206ENST00000461553 CERS3Q8IU89 383 aa17.01■□□□□ 0.31
USP4-206ENST00000461553 CLASRPQ8N2M8 674 aaKnown RBP17.01■□□□□ 0.31
USP4-206ENST00000461553 KIF1BPQ96EK5 621 aa17.01■□□□□ 0.31
USP4-206ENST00000461553 DHX36Q9H2U1 1008 aaKnown RBP17.01■□□□□ 0.31
USP4-206ENST00000461553 ZBTB40Q9NUA8 1239 aa17.01■□□□□ 0.31
USP4-206ENST00000461553 CPA4Q9UI42 421 aa17.01■□□□□ 0.31
USP4-206ENST00000461553 HERC5Q9UII4 1024 aaKnown RBP17.01■□□□□ 0.31
USP4-206ENST00000461553 AFG3L2Q9Y4W6 797 aa17.01■□□□□ 0.31
USP4-206ENST00000461553 TRIM75PA6NK02 468 aa17■□□□□ 0.31
USP4-206ENST00000461553 APBB1O00213 710 aa17■□□□□ 0.31
USP4-206ENST00000461553 CYP7A1P22680 504 aa17■□□□□ 0.31
USP4-206ENST00000461553 PPP4CP60510 307 aa17■□□□□ 0.31
USP4-206ENST00000461553 MAP3K12Q12852 859 aa17■□□□□ 0.31
USP4-206ENST00000461553 MAPKAPK5Q8IW41 473 aa17■□□□□ 0.31
USP4-206ENST00000461553 TGFBRAP1Q8WUH2 860 aa17■□□□□ 0.31
USP4-206ENST00000461553 TRIM34Q9BYJ4 488 aa17■□□□□ 0.31
USP4-206ENST00000461553 FRMD4AQ9P2Q2 1039 aaPredicted RBP17■□□□□ 0.31
USP4-206ENST00000461553 PI4KBQ9UBF8 816 aa17■□□□□ 0.31
USP4-206ENST00000461553 GNRH1P01148 92 aa16.99■□□□□ 0.31
USP4-206ENST00000461553 SLC9C1Q4G0N8 1177 aa16.99■□□□□ 0.31
USP4-206ENST00000461553 TMED8Q6PL24 325 aaPredicted RBP16.99■□□□□ 0.31
USP4-206ENST00000461553 C17orf99Q6UX52 265 aa16.99■□□□□ 0.31
USP4-206ENST00000461553 MAGEB6Q8N7X4 407 aa16.99■□□□□ 0.31
USP4-206ENST00000461553 ARMC5Q96C12 935 aa16.99■□□□□ 0.31
USP4-206ENST00000461553 TBC1D2Q9BYX2 928 aa16.99■□□□□ 0.31
USP4-206ENST00000461553 ARHGAP39Q9C0H5 1083 aa16.99■□□□□ 0.31
USP4-206ENST00000461553 PTCH2Q9Y6C5 1203 aa16.99■□□□□ 0.31
USP4-206ENST00000461553 NDUFB9Q9Y6M9 179 aa16.99■□□□□ 0.31
USP4-206ENST00000461553 HLA-DOAP06340 250 aa16.98■□□□□ 0.31
USP4-206ENST00000461553 IFIT2P09913 472 aaKnown RBP16.98■□□□□ 0.31
USP4-206ENST00000461553 PDE3AQ14432 1141 aa16.98■□□□□ 0.31
USP4-206ENST00000461553 TTF1Q15361 905 aaPredicted RBP16.98■□□□□ 0.31
USP4-206ENST00000461553 GPAT2Q6NUI2 795 aa16.98■□□□□ 0.31
USP4-206ENST00000461553 CCDC84Q86UT8 332 aaPredicted RBP16.98■□□□□ 0.31
USP4-206ENST00000461553 CRACR2BQ8N4Y2 399 aaPredicted RBP16.98■□□□□ 0.31
USP4-206ENST00000461553 SLC45A1Q9Y2W3 748 aa16.98■□□□□ 0.31
USP4-206ENST00000461553 MKI67P46013 3256 aaKnown RBP16.97■□□□□ 0.31
USP4-206ENST00000461553 RAB11FIP3O75154 756 aa16.97■□□□□ 0.31
USP4-206ENST00000461553 CYP2C8P10632 490 aa16.97■□□□□ 0.31
USP4-206ENST00000461553 CAP2P40123 477 aa16.97■□□□□ 0.31
USP4-206ENST00000461553 PRMT2P55345 433 aa16.97■□□□□ 0.31
USP4-206ENST00000461553 MIGA1Q8NAN2 632 aa16.97■□□□□ 0.31
USP4-206ENST00000461553 SMCR8Q8TEV9 937 aaPredicted RBP16.97■□□□□ 0.31
USP4-206ENST00000461553 BCL11AQ9H165 835 aa16.97■□□□□ 0.31
USP4-206ENST00000461553 ANTXR1Q9H6X2 564 aa16.97■□□□□ 0.31
USP4-206ENST00000461553 AS3MTQ9HBK9 375 aa16.97■□□□□ 0.31
USP4-206ENST00000461553 AGTPBP1Q9UPW5 1226 aa16.97■□□□□ 0.31
USP4-206ENST00000461553 DOCK3Q8IZD9 2030 aa16.97■□□□□ 0.31
USP4-206ENST00000461553 ECM2O94769 699 aaPredicted RBP16.96■□□□□ 0.31
USP4-206ENST00000461553 USP5P45974 858 aa16.96■□□□□ 0.31
USP4-206ENST00000461553 DYNLL1P63167 89 aaKnown RBP16.96■□□□□ 0.31
USP4-206ENST00000461553 NBPF11Q86T75 865 aa16.96■□□□□ 0.31
USP4-206ENST00000461553 SIRT2Q8IXJ6 389 aa16.96■□□□□ 0.31
USP4-206ENST00000461553 PROCA1Q8NCQ7 364 aaPredicted RBP16.96■□□□□ 0.31
USP4-206ENST00000461553 ZNF280CQ8ND82 737 aa16.96■□□□□ 0.31
USP4-206ENST00000461553 ZNF333Q96JL9 665 aa16.96■□□□□ 0.31
USP4-206ENST00000461553 DNAJC2Q99543 621 aaKnown RBP16.96■□□□□ 0.31
USP4-206ENST00000461553 SAP30BPQ9UHR5 308 aaKnown RBP16.96■□□□□ 0.31
USP4-206ENST00000461553 PNMA3Q9UL41 463 aa16.96■□□□□ 0.31
USP4-206ENST00000461553 BAZ2AQ9UIF9 1905 aaKnown RBP16.96■□□□□ 0.3
USP4-206ENST00000461553 USP17L5A8MUK1 530 aa16.95■□□□□ 0.3
USP4-206ENST00000461553 FMNL1O95466 1100 aaPredicted RBP16.95■□□□□ 0.3
USP4-206ENST00000461553 ASNSP08243 561 aa16.95■□□□□ 0.3
USP4-206ENST00000461553 BCRP11274 1271 aa16.95■□□□□ 0.3
USP4-206ENST00000461553 HOXD10P28358 340 aa16.95■□□□□ 0.3
USP4-206ENST00000461553 PSMC4P43686 418 aa16.95■□□□□ 0.3
USP4-206ENST00000461553 FCGRTP55899 365 aa16.95■□□□□ 0.3
USP4-206ENST00000461553 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.95■□□□□ 0.3
USP4-206ENST00000461553 PALD1Q9ULE6 856 aa16.95■□□□□ 0.3
USP4-206ENST00000461553 MYPNQ86TC9 1320 aa16.95■□□□□ 0.3
USP4-206ENST00000461553 SPP2Q13103 211 aa16.94■□□□□ 0.3
USP4-206ENST00000461553 SLC4A8Q2Y0W8 1093 aa16.94■□□□□ 0.3
USP4-206ENST00000461553 C20orf194Q5TEA3 1177 aa16.94■□□□□ 0.3
USP4-206ENST00000461553 TMEM106CQ9BVX2 250 aa16.94■□□□□ 0.3
USP4-206ENST00000461553 DNAJC18Q9H819 358 aa16.94■□□□□ 0.3
USP4-206ENST00000461553 POTEFA5A3E0 1075 aa16.93■□□□□ 0.3
USP4-206ENST00000461553 GOLIM4O00461 696 aa16.93■□□□□ 0.3
USP4-206ENST00000461553 OSBPP22059 807 aa16.93■□□□□ 0.3
USP4-206ENST00000461553 HMGCS2P54868 508 aa16.93■□□□□ 0.3
USP4-206ENST00000461553 PABPC4Q13310 644 aaKnown RBP eCLIP16.93■□□□□ 0.3
USP4-206ENST00000461553 RRP1BQ14684 758 aaKnown RBP16.93■□□□□ 0.3
USP4-206ENST00000461553 TREML2Q5T2D2 321 aa16.93■□□□□ 0.3
USP4-206ENST00000461553 METTL16Q86W50 562 aaKnown RBP16.93■□□□□ 0.3
USP4-206ENST00000461553 FOXP4Q8IVH2 680 aaPredicted RBP16.93■□□□□ 0.3
USP4-206ENST00000461553 TRIM47Q96LD4 638 aa16.93■□□□□ 0.3
USP4-206ENST00000461553 SRRDQ9UH36 339 aa16.93■□□□□ 0.3
USP4-206ENST00000461553 MAGEB6P1A0A0J9YX57 407 aa16.92■□□□□ 0.3
USP4-206ENST00000461553 GDF11O95390 407 aa16.92■□□□□ 0.3
USP4-206ENST00000461553 PDE6AP16499 860 aa16.92■□□□□ 0.3
USP4-206ENST00000461553 CTGFP29279 349 aa16.92■□□□□ 0.3
USP4-206ENST00000461553 RAET1EQ8TD07 263 aa16.92■□□□□ 0.3
USP4-206ENST00000461553 GINM1Q9NU53 330 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms