RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 DEF6Q9H4E7 631 aa13.27□□□□□ -0.29
NPHP4-204ENST00000460696 DENND2AQ9ULE3 1009 aa13.27□□□□□ -0.29
NPHP4-204ENST00000460696 CUTAO60888 179 aa13.26□□□□□ -0.29
NPHP4-204ENST00000460696 DPCR1Q3MIW9 517 aa13.26□□□□□ -0.29
NPHP4-204ENST00000460696 FAM47AQ5JRC9 791 aa13.26□□□□□ -0.29
NPHP4-204ENST00000460696 TRMT44Q8IYL2 757 aaKnown RBP13.26□□□□□ -0.29
NPHP4-204ENST00000460696 LINC00301Q8NCQ3 95 aa13.26□□□□□ -0.29
NPHP4-204ENST00000460696 ISCA1Q9BUE6 129 aa13.26□□□□□ -0.29
NPHP4-204ENST00000460696 CGNQ9P2M7 1197 aaKnown RBP13.26□□□□□ -0.29
NPHP4-204ENST00000460696 UTYO14607 1347 aa13.26□□□□□ -0.29
NPHP4-204ENST00000460696 ZMYM6O95789 1325 aa13.26□□□□□ -0.29
NPHP4-204ENST00000460696 RTL9Q8NET4 1388 aa13.26□□□□□ -0.29
NPHP4-204ENST00000460696 IDEP14735 1019 aa13.26□□□□□ -0.29
NPHP4-204ENST00000460696 PPARAQ07869 468 aa13.26□□□□□ -0.29
NPHP4-204ENST00000460696 TMCO3Q6UWJ1 677 aa13.26□□□□□ -0.29
NPHP4-204ENST00000460696 CACTINQ8WUQ7 758 aaKnown RBP13.26□□□□□ -0.29
NPHP4-204ENST00000460696 JDP2Q8WYK2 163 aa13.26□□□□□ -0.29
NPHP4-204ENST00000460696 ZNF827Q17R98 1081 aa13.26□□□□□ -0.29
NPHP4-204ENST00000460696 HSP90B2PQ58FF3 399 aa13.26□□□□□ -0.29
NPHP4-204ENST00000460696 TDRD7Q8NHU6 1098 aaKnown RBP13.26□□□□□ -0.29
NPHP4-204ENST00000460696 TCP11L1Q9NUJ3 509 aa13.26□□□□□ -0.29
NPHP4-204ENST00000460696 ZSWIM5Q9P217 1185 aa13.26□□□□□ -0.29
NPHP4-204ENST00000460696 KIF5CO60282 957 aa13.25□□□□□ -0.29
NPHP4-204ENST00000460696 TERF1P54274 439 aa13.25□□□□□ -0.29
NPHP4-204ENST00000460696 TSGA10IPQ3SY00 556 aa13.25□□□□□ -0.29
NPHP4-204ENST00000460696 MAPK8IP1Q9UQF2 711 aa13.25□□□□□ -0.29
NPHP4-204ENST00000460696 MED23Q9ULK4 1368 aa13.25□□□□□ -0.29
NPHP4-204ENST00000460696 ARHGAP23Q9P227 1491 aa13.25□□□□□ -0.29
NPHP4-204ENST00000460696 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.25□□□□□ -0.29
NPHP4-204ENST00000460696 IGSF3O75054 1194 aa13.25□□□□□ -0.29
NPHP4-204ENST00000460696 RASGRF1Q13972 1273 aa13.25□□□□□ -0.29
NPHP4-204ENST00000460696 PTPN21Q16825 1174 aa13.25□□□□□ -0.29
NPHP4-204ENST00000460696 CCDC96Q2M329 555 aa13.25□□□□□ -0.29
NPHP4-204ENST00000460696 SUSD4Q5VX71 490 aa13.25□□□□□ -0.29
NPHP4-204ENST00000460696 KIAA1524Q8TCG1 905 aa13.25□□□□□ -0.29
NPHP4-204ENST00000460696 CCDC12Q8WUD4 166 aaPredicted RBP13.25□□□□□ -0.29
NPHP4-204ENST00000460696 NFE2L3Q9Y4A8 694 aa13.25□□□□□ -0.29
NPHP4-204ENST00000460696 TNKSO95271 1327 aa13.25□□□□□ -0.29
NPHP4-204ENST00000460696 CMA1P23946 247 aa13.25□□□□□ -0.29
NPHP4-204ENST00000460696 STAT6P42226 847 aa13.25□□□□□ -0.29
NPHP4-204ENST00000460696 KIF23Q02241 960 aaPredicted RBP13.25□□□□□ -0.29
NPHP4-204ENST00000460696 PIK3AP1Q6ZUJ8 805 aa13.25□□□□□ -0.29
NPHP4-204ENST00000460696 KIAA1328Q86T90 577 aa13.25□□□□□ -0.29
NPHP4-204ENST00000460696 NOSTRINQ8IVI9 506 aa13.25□□□□□ -0.29
NPHP4-204ENST00000460696 FANCBQ8NB91 859 aa13.25□□□□□ -0.29
NPHP4-204ENST00000460696 ZBTB9Q96C00 473 aa13.25□□□□□ -0.29
NPHP4-204ENST00000460696 LDHBP07195 334 aaKnown RBP13.24□□□□□ -0.29
NPHP4-204ENST00000460696 CALM1P0DP23 149 aa13.24□□□□□ -0.29
NPHP4-204ENST00000460696 CALM2P0DP24 149 aa13.24□□□□□ -0.29
NPHP4-204ENST00000460696 CALM3P0DP25 149 aa13.24□□□□□ -0.29
NPHP4-204ENST00000460696 KARSQ15046 597 aaKnown RBP13.24□□□□□ -0.29
NPHP4-204ENST00000460696 NYXQ9GZU5 481 aa13.24□□□□□ -0.29
NPHP4-204ENST00000460696 SPON1Q9HCB6 807 aa13.24□□□□□ -0.29
NPHP4-204ENST00000460696 SAP30BPQ9UHR5 308 aaKnown RBP13.24□□□□□ -0.29
NPHP4-204ENST00000460696 SLU7O95391 586 aaKnown RBP13.24□□□□□ -0.29
NPHP4-204ENST00000460696 BMP15O95972 392 aa13.24□□□□□ -0.29
NPHP4-204ENST00000460696 LCORLQ8N3X6 602 aa13.24□□□□□ -0.29
NPHP4-204ENST00000460696 SERTAD1Q9UHV2 236 aa13.24□□□□□ -0.29
NPHP4-204ENST00000460696 RPS8P62241 208 aaKnown RBP13.24□□□□□ -0.29
NPHP4-204ENST00000460696 PICALMQ13492 652 aa13.24□□□□□ -0.29
NPHP4-204ENST00000460696 NOM1Q5C9Z4 860 aaKnown RBP13.24□□□□□ -0.29
NPHP4-204ENST00000460696 ZC3H12CQ9C0D7 883 aaKnown RBP13.24□□□□□ -0.29
NPHP4-204ENST00000460696 BCL2L12Q9HB09 334 aa13.24□□□□□ -0.29
NPHP4-204ENST00000460696 CRACR2BQ8N4Y2 399 aaPredicted RBP13.23□□□□□ -0.29
NPHP4-204ENST00000460696 SLC39A14Q15043 492 aa13.23□□□□□ -0.29
NPHP4-204ENST00000460696 TBC1D10CQ8IV04 446 aa13.23□□□□□ -0.29
NPHP4-204ENST00000460696 LRRC8AQ8IWT6 810 aa13.23□□□□□ -0.29
NPHP4-204ENST00000460696 NLGN1Q8N2Q7 840 aa13.23□□□□□ -0.29
NPHP4-204ENST00000460696 TRIM47Q96LD4 638 aa13.23□□□□□ -0.29
NPHP4-204ENST00000460696 BMP2KQ9NSY1 1161 aaPredicted RBP13.23□□□□□ -0.29
NPHP4-204ENST00000460696 ARID5BQ14865 1188 aa13.23□□□□□ -0.29
NPHP4-204ENST00000460696 C2CD5Q86YS7 1000 aa13.23□□□□□ -0.29
NPHP4-204ENST00000460696 STRBPQ96SI9 672 aaKnown RBP13.23□□□□□ -0.29
NPHP4-204ENST00000460696 LZTFL1Q9NQ48 299 aa13.23□□□□□ -0.29
NPHP4-204ENST00000460696 PCDHA5Q9Y5H7 936 aa13.23□□□□□ -0.29
NPHP4-204ENST00000460696 DLG5Q8TDM6 1919 aa13.22□□□□□ -0.29
NPHP4-204ENST00000460696 A0A1W2PQ27 194 aa13.22□□□□□ -0.29
NPHP4-204ENST00000460696 A0A1W2PQ64 194 aa13.22□□□□□ -0.29
NPHP4-204ENST00000460696 A0A1W2PQD8 194 aa13.22□□□□□ -0.29
NPHP4-204ENST00000460696 ERICH4A6NGS2 130 aa13.22□□□□□ -0.29
NPHP4-204ENST00000460696 MTIF2P46199 727 aaKnown RBP13.22□□□□□ -0.29
NPHP4-204ENST00000460696 NAPAP54920 295 aa13.22□□□□□ -0.29
NPHP4-204ENST00000460696 POSTNQ15063 836 aa13.22□□□□□ -0.29
NPHP4-204ENST00000460696 GOLPH3LQ9H4A5 285 aa13.22□□□□□ -0.29
NPHP4-204ENST00000460696 POLR3EQ9NVU0 708 aa13.22□□□□□ -0.29
NPHP4-204ENST00000460696 CYP2D7A0A087X1C5 515 aa13.22□□□□□ -0.29
NPHP4-204ENST00000460696 CCT6AP40227 531 aaKnown RBP13.22□□□□□ -0.29
NPHP4-204ENST00000460696 NR5A1Q13285 461 aa13.22□□□□□ -0.29
NPHP4-204ENST00000460696 IQUBQ8NA54 791 aa13.22□□□□□ -0.29
NPHP4-204ENST00000460696 ZMYND15Q9H091 742 aa13.22□□□□□ -0.29
NPHP4-204ENST00000460696 SH2B2O14492 632 aaPredicted RBP13.22□□□□□ -0.29
NPHP4-204ENST00000460696 DYNLL1P63167 89 aaKnown RBP13.22□□□□□ -0.29
NPHP4-204ENST00000460696 COL9A3Q14050 684 aaPredicted RBP13.22□□□□□ -0.29
NPHP4-204ENST00000460696 ENOX2Q16206 610 aaKnown RBP13.22□□□□□ -0.29
NPHP4-204ENST00000460696 EAPPQ56P03 285 aaPredicted RBP13.22□□□□□ -0.29
NPHP4-204ENST00000460696 CCDC178Q5BJE1 867 aa13.22□□□□□ -0.29
NPHP4-204ENST00000460696 SMARCC2Q8TAQ2 1214 aa13.22□□□□□ -0.29
NPHP4-204ENST00000460696 MRFAP1L1Q96HT8 127 aa13.22□□□□□ -0.29
NPHP4-204ENST00000460696 ANKRD2Q9GZV1 360 aa13.22□□□□□ -0.29
NPHP4-204ENST00000460696 SLIT1O75093 1534 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms