RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 NOL10Q9BSC4 688 aaKnown RBP22.52■■□□□ 1.2
HOXD3-204ENST00000459979 ANTXR1Q9H6X2 564 aa22.52■■□□□ 1.2
HOXD3-204ENST00000459979 ZCCHC17Q9NP64 241 aaKnown RBP22.52■■□□□ 1.2
HOXD3-204ENST00000459979 CPA4Q9UI42 421 aa22.52■■□□□ 1.2
HOXD3-204ENST00000459979 NDUFB9Q9Y6M9 179 aa22.52■■□□□ 1.2
HOXD3-204ENST00000459979 IDH1O75874 414 aaKnown RBP22.51■■□□□ 1.19
HOXD3-204ENST00000459979 CTGFP29279 349 aa22.51■■□□□ 1.19
HOXD3-204ENST00000459979 CERS3Q8IU89 383 aa22.51■■□□□ 1.19
HOXD3-204ENST00000459979 GCC1Q96CN9 775 aa22.51■■□□□ 1.19
HOXD3-204ENST00000459979 MGAMO43451 1857 aa22.5■■□□□ 1.19
HOXD3-204ENST00000459979 DDTLA6NHG4 134 aaPredicted RBP22.5■■□□□ 1.19
HOXD3-204ENST00000459979 HABP4Q5JVS0 413 aaKnown RBP22.5■■□□□ 1.19
HOXD3-204ENST00000459979 SH3RF3Q8TEJ3 882 aaPredicted RBP22.5■■□□□ 1.19
HOXD3-204ENST00000459979 AATFQ9NY61 560 aaKnown RBP eCLIP22.5■■□□□ 1.19
HOXD3-204ENST00000459979 PDHXO00330 501 aa22.49■■□□□ 1.19
HOXD3-204ENST00000459979 TBC1D12O60347 775 aa22.49■■□□□ 1.19
HOXD3-204ENST00000459979 CYP7A1P22680 504 aa22.49■■□□□ 1.19
HOXD3-204ENST00000459979 PICALMQ13492 652 aa22.49■■□□□ 1.19
HOXD3-204ENST00000459979 NOL9Q5SY16 702 aaKnown RBP22.49■■□□□ 1.19
HOXD3-204ENST00000459979 C17orf99Q6UX52 265 aa22.49■■□□□ 1.19
HOXD3-204ENST00000459979 TEX11Q8IYF3 940 aa22.49■■□□□ 1.19
HOXD3-204ENST00000459979 OSBPL5Q9H0X9 879 aaPredicted RBP22.49■■□□□ 1.19
HOXD3-204ENST00000459979 FOCADQ5VW36 1801 aa22.49■■□□□ 1.19
HOXD3-204ENST00000459979 CDK5RAP2Q96SN8 1893 aa22.49■■□□□ 1.19
HOXD3-204ENST00000459979 PHF20L1A8MW92 1017 aa22.48■■□□□ 1.19
HOXD3-204ENST00000459979 SMARCA5O60264 1052 aaPredicted RBP22.48■■□□□ 1.19
HOXD3-204ENST00000459979 MOGSQ13724 837 aa22.48■■□□□ 1.19
HOXD3-204ENST00000459979 ANKRD23Q86SG2 305 aa22.48■■□□□ 1.19
HOXD3-204ENST00000459979 ZSCAN29Q8IWY8 852 aaPredicted RBP22.48■■□□□ 1.19
HOXD3-204ENST00000459979 MAGEB6Q8N7X4 407 aa22.48■■□□□ 1.19
HOXD3-204ENST00000459979 KCNH4Q9UQ05 1017 aa22.48■■□□□ 1.19
HOXD3-204ENST00000459979 PTPRFP10586 1907 aa22.47■■□□□ 1.19
HOXD3-204ENST00000459979 HAUS7Q99871 368 aa22.47■■□□□ 1.19
HOXD3-204ENST00000459979 ADGRA2Q96PE1 1338 aa22.47■■□□□ 1.19
HOXD3-204ENST00000459979 DOCK1Q14185 1865 aa22.46■■□□□ 1.19
HOXD3-204ENST00000459979 SLURP2P0DP57 97 aa22.46■■□□□ 1.19
HOXD3-204ENST00000459979 PSMC4P43686 418 aa22.46■■□□□ 1.19
HOXD3-204ENST00000459979 HDAC1Q13547 482 aaPredicted RBP22.46■■□□□ 1.19
HOXD3-204ENST00000459979 TRIM47Q96LD4 638 aa22.46■■□□□ 1.19
HOXD3-204ENST00000459979 DHX36Q9H2U1 1008 aaKnown RBP22.46■■□□□ 1.19
HOXD3-204ENST00000459979 PHIPQ8WWQ0 1821 aa22.45■■□□□ 1.19
HOXD3-204ENST00000459979 GOLIM4O00461 696 aa22.45■■□□□ 1.18
HOXD3-204ENST00000459979 MTFR1Q15390 333 aa22.45■■□□□ 1.18
HOXD3-204ENST00000459979 DNAJC2Q99543 621 aaKnown RBP22.45■■□□□ 1.18
HOXD3-204ENST00000459979 BOLA2Q9H3K6 86 aa22.45■■□□□ 1.18
HOXD3-204ENST00000459979 ECHDC1Q9NTX5 307 aa22.45■■□□□ 1.18
HOXD3-204ENST00000459979 PAG1Q9NWQ8 432 aa22.45■■□□□ 1.18
HOXD3-204ENST00000459979 PDE6AP16499 860 aa22.44■■□□□ 1.18
HOXD3-204ENST00000459979 OSBPP22059 807 aa22.44■■□□□ 1.18
HOXD3-204ENST00000459979 SLC9C2Q5TAH2 1124 aa22.44■■□□□ 1.18
HOXD3-204ENST00000459979 TGFBRAP1Q8WUH2 860 aa22.44■■□□□ 1.18
HOXD3-204ENST00000459979 BCL11AQ9H165 835 aa22.44■■□□□ 1.18
HOXD3-204ENST00000459979 SRRDQ9UH36 339 aa22.44■■□□□ 1.18
HOXD3-204ENST00000459979 FLT1P17948 1338 aa22.43■■□□□ 1.18
HOXD3-204ENST00000459979 CTNND1O60716 968 aaKnown RBP22.43■■□□□ 1.18
HOXD3-204ENST00000459979 FMNL1O95466 1100 aaPredicted RBP22.43■■□□□ 1.18
HOXD3-204ENST00000459979 GNRH1P01148 92 aa22.43■■□□□ 1.18
HOXD3-204ENST00000459979 CYP2C8P10632 490 aa22.43■■□□□ 1.18
HOXD3-204ENST00000459979 DYNLL1P63167 89 aaKnown RBP22.43■■□□□ 1.18
HOXD3-204ENST00000459979 GPAT2Q6NUI2 795 aa22.43■■□□□ 1.18
HOXD3-204ENST00000459979 METTL16Q86W50 562 aaKnown RBP22.43■■□□□ 1.18
HOXD3-204ENST00000459979 PI4KBQ9UBF8 816 aa22.43■■□□□ 1.18
HOXD3-204ENST00000459979 TCRBV5S4A2TA0A5A2 114 aa22.42■■□□□ 1.18
HOXD3-204ENST00000459979 PRMT2P55345 433 aa22.42■■□□□ 1.18
HOXD3-204ENST00000459979 SCYL3Q8IZE3 742 aa22.42■■□□□ 1.18
HOXD3-204ENST00000459979 MIGA1Q8NAN2 632 aa22.42■■□□□ 1.18
HOXD3-204ENST00000459979 EDC3Q96F86 508 aaKnown RBP22.42■■□□□ 1.18
HOXD3-204ENST00000459979 RIOK1Q9BRS2 568 aaKnown RBP22.42■■□□□ 1.18
HOXD3-204ENST00000459979 HERC5Q9UII4 1024 aaKnown RBP22.42■■□□□ 1.18
HOXD3-204ENST00000459979 MYPNQ86TC9 1320 aa22.41■■□□□ 1.18
HOXD3-204ENST00000459979 FOXP4Q8IVH2 680 aaPredicted RBP22.41■■□□□ 1.18
HOXD3-204ENST00000459979 MAPKAPK5Q8IW41 473 aa22.41■■□□□ 1.18
HOXD3-204ENST00000459979 RAET1EQ8TD07 263 aa22.41■■□□□ 1.18
HOXD3-204ENST00000459979 SHISA4Q96DD7 197 aa22.41■■□□□ 1.18
HOXD3-204ENST00000459979 GPATCH3Q96I76 525 aa22.41■■□□□ 1.18
HOXD3-204ENST00000459979 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.41■■□□□ 1.18
HOXD3-204ENST00000459979 ZHX2Q9Y6X8 837 aa22.41■■□□□ 1.18
HOXD3-204ENST00000459979 SIPA1L1O43166 1804 aa22.41■■□□□ 1.18
HOXD3-204ENST00000459979 ZNF532Q9HCE3 1301 aa22.4■■□□□ 1.18
HOXD3-204ENST00000459979 MYH7P12883 1935 aa22.4■■□□□ 1.18
HOXD3-204ENST00000459979 PARK7Q99497 189 aaKnown RBP22.4■■□□□ 1.18
HOXD3-204ENST00000459979 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.4■■□□□ 1.18
HOXD3-204ENST00000459979 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.4■■□□□ 1.18
HOXD3-204ENST00000459979 TTC41PQ6P2S7 1318 aa22.39■■□□□ 1.18
HOXD3-204ENST00000459979 ATAD5Q96QE3 1844 aa22.39■■□□□ 1.17
HOXD3-204ENST00000459979 MAGEB6P1A0A0J9YX57 407 aa22.39■■□□□ 1.17
HOXD3-204ENST00000459979 CXCL11O14625 94 aa22.39■■□□□ 1.17
HOXD3-204ENST00000459979 BCRP11274 1271 aa22.39■■□□□ 1.17
HOXD3-204ENST00000459979 PTPRAP18433 802 aa22.39■■□□□ 1.17
HOXD3-204ENST00000459979 GRK4P32298 578 aa22.39■■□□□ 1.17
HOXD3-204ENST00000459979 ADD2P35612 726 aa22.39■■□□□ 1.17
HOXD3-204ENST00000459979 GADL1Q6ZQY3 521 aa22.39■■□□□ 1.17
HOXD3-204ENST00000459979 CCDC84Q86UT8 332 aaPredicted RBP22.39■■□□□ 1.17
HOXD3-204ENST00000459979 PICK1Q9NRD5 415 aa22.39■■□□□ 1.17
HOXD3-204ENST00000459979 COLQQ9Y215 455 aaPredicted RBP22.39■■□□□ 1.17
HOXD3-204ENST00000459979 SUPT16HQ9Y5B9 1047 aaKnown RBP22.39■■□□□ 1.17
HOXD3-204ENST00000459979 MYH1P12882 1939 aa22.39■■□□□ 1.17
HOXD3-204ENST00000459979 HOXD10P28358 340 aa22.38■■□□□ 1.17
HOXD3-204ENST00000459979 PRKCZQ05513 592 aa22.38■■□□□ 1.17
HOXD3-204ENST00000459979 UBE3CQ15386 1083 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms