RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 TCEANC2Q96MN5 208 aa13.07□□□□□ -0.32
SCN9A-205ENST00000454569 UPF3BQ9BZI7 483 aaKnown RBP13.07□□□□□ -0.32
SCN9A-205ENST00000454569 MCM9Q9NXL9 1143 aa13.07□□□□□ -0.32
SCN9A-205ENST00000454569 HDAC9Q9UKV0 1011 aa13.07□□□□□ -0.32
SCN9A-205ENST00000454569 ZMYM6O95789 1325 aa13.07□□□□□ -0.32
SCN9A-205ENST00000454569 DDTLA6NHG4 134 aaPredicted RBP13.07□□□□□ -0.32
SCN9A-205ENST00000454569 POTECB2RU33 542 aa13.07□□□□□ -0.32
SCN9A-205ENST00000454569 ZNF213O14771 459 aa13.07□□□□□ -0.32
SCN9A-205ENST00000454569 MCCP23508 829 aa13.07□□□□□ -0.32
SCN9A-205ENST00000454569 PPARAQ07869 468 aa13.07□□□□□ -0.32
SCN9A-205ENST00000454569 CDAN1Q8IWY9 1227 aa13.07□□□□□ -0.32
SCN9A-205ENST00000454569 JAKMIP1Q96N16 626 aaKnown RBP13.07□□□□□ -0.32
SCN9A-205ENST00000454569 CTNNA3Q9UI47 895 aa13.07□□□□□ -0.32
SCN9A-205ENST00000454569 CNTNAP1P78357 1384 aa13.06□□□□□ -0.32
SCN9A-205ENST00000454569 TCP10L2B9ZVM9 353 aa13.06□□□□□ -0.32
SCN9A-205ENST00000454569 EIF5BO60841 1220 aaKnown RBP13.06□□□□□ -0.32
SCN9A-205ENST00000454569 PLCG2P16885 1265 aa13.06□□□□□ -0.32
SCN9A-205ENST00000454569 ANAPC15P60006 121 aa13.06□□□□□ -0.32
SCN9A-205ENST00000454569 IMMTQ16891 758 aaKnown RBP13.06□□□□□ -0.32
SCN9A-205ENST00000454569 C12orf60Q5U649 245 aa13.06□□□□□ -0.32
SCN9A-205ENST00000454569 GIMAP6Q6P9H5 292 aa13.06□□□□□ -0.32
SCN9A-205ENST00000454569 CHST3Q7LGC8 479 aa13.06□□□□□ -0.32
SCN9A-205ENST00000454569 IDI2Q9BXS1 227 aa13.06□□□□□ -0.32
SCN9A-205ENST00000454569 NACAP1Q9BZK3 213 aa13.06□□□□□ -0.32
SCN9A-205ENST00000454569 NEDD4P46934 1319 aa13.06□□□□□ -0.32
SCN9A-205ENST00000454569 CASTP20810 708 aaKnown RBP13.05□□□□□ -0.32
SCN9A-205ENST00000454569 ANP32AP39687 249 aaKnown RBP13.05□□□□□ -0.32
SCN9A-205ENST00000454569 PSEN1P49768 467 aa13.05□□□□□ -0.32
SCN9A-205ENST00000454569 KIF4BQ2VIQ3 1234 aa13.05□□□□□ -0.32
SCN9A-205ENST00000454569 SBK1Q52WX2 424 aa13.05□□□□□ -0.32
SCN9A-205ENST00000454569 SLC44A5Q8NCS7 719 aa13.05□□□□□ -0.32
SCN9A-205ENST00000454569 LARP6Q9BRS8 491 aaKnown RBP13.05□□□□□ -0.32
SCN9A-205ENST00000454569 OSBPL5Q9H0X9 879 aaPredicted RBP13.05□□□□□ -0.32
SCN9A-205ENST00000454569 SCN4AP35499 1836 aa13.05□□□□□ -0.32
SCN9A-205ENST00000454569 GLTPD2A6NH11 291 aa13.04□□□□□ -0.32
SCN9A-205ENST00000454569 PRDM1O75626 825 aa13.04□□□□□ -0.32
SCN9A-205ENST00000454569 ZKSCAN1P17029 563 aaPredicted RBP13.04□□□□□ -0.32
SCN9A-205ENST00000454569 DLK2Q6UY11 383 aa13.04□□□□□ -0.32
SCN9A-205ENST00000454569 CYB5R4Q7L1T6 521 aa13.04□□□□□ -0.32
SCN9A-205ENST00000454569 LRRC2Q9BYS8 371 aa13.04□□□□□ -0.32
SCN9A-205ENST00000454569 VEZTQ9HBM0 779 aa13.04□□□□□ -0.32
SCN9A-205ENST00000454569 ZSWIM6Q9HCJ5 1215 aa13.04□□□□□ -0.32
SCN9A-205ENST00000454569 GPHNQ9NQX3 736 aaPredicted RBP13.04□□□□□ -0.32
SCN9A-205ENST00000454569 PGAP2Q9UHJ9 254 aa13.04□□□□□ -0.32
SCN9A-205ENST00000454569 ANAPC4Q9UJX5 808 aa13.04□□□□□ -0.32
SCN9A-205ENST00000454569 WDR90Q96KV7 1748 aa13.04□□□□□ -0.32
SCN9A-205ENST00000454569 H7C1D1 291 aa13.03□□□□□ -0.32
SCN9A-205ENST00000454569 NEK4P51957 841 aa13.03□□□□□ -0.32
SCN9A-205ENST00000454569 ANTXR2P58335 489 aa13.03□□□□□ -0.32
SCN9A-205ENST00000454569 AKNAD1Q5T1N1 836 aa13.03□□□□□ -0.32
SCN9A-205ENST00000454569 RNF20Q5VTR2 975 aa13.03□□□□□ -0.32
SCN9A-205ENST00000454569 TTC14Q96N46 770 aa13.03□□□□□ -0.32
SCN9A-205ENST00000454569 NEK1Q96PY6 1258 aa13.03□□□□□ -0.32
SCN9A-205ENST00000454569 HACL1Q9UJ83 578 aa13.03□□□□□ -0.32
SCN9A-205ENST00000454569 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.03□□□□□ -0.32
SCN9A-205ENST00000454569 FAM196BA6NMK8 535 aa13.03□□□□□ -0.32
SCN9A-205ENST00000454569 B4E1Z4 1266 aa13.03□□□□□ -0.32
SCN9A-205ENST00000454569 POLR3DP05423 398 aaPredicted RBP13.03□□□□□ -0.32
SCN9A-205ENST00000454569 DPY19L2Q6NUT2 758 aa13.03□□□□□ -0.32
SCN9A-205ENST00000454569 CERS3Q8IU89 383 aa13.03□□□□□ -0.32
SCN9A-205ENST00000454569 MB21D2Q8IYB1 491 aaPredicted RBP13.03□□□□□ -0.32
SCN9A-205ENST00000454569 PIP4P2Q8N4L2 257 aa13.03□□□□□ -0.32
SCN9A-205ENST00000454569 STAG1Q8WVM7 1258 aa13.03□□□□□ -0.32
SCN9A-205ENST00000454569 L3MBTL3Q96JM7 780 aaPredicted RBP13.03□□□□□ -0.32
SCN9A-205ENST00000454569 TMEM39BQ9GZU3 492 aa13.03□□□□□ -0.32
SCN9A-205ENST00000454569 DNAJC18Q9H819 358 aa13.03□□□□□ -0.32
SCN9A-205ENST00000454569 ARPP21Q9UBL0 812 aaPredicted RBP13.03□□□□□ -0.32
SCN9A-205ENST00000454569 FGRP09769 529 aa13.02□□□□□ -0.33
SCN9A-205ENST00000454569 SLC4A3P48751 1232 aa13.02□□□□□ -0.33
SCN9A-205ENST00000454569 EXOSC10Q01780 885 aaKnown RBP13.02□□□□□ -0.33
SCN9A-205ENST00000454569 RABEP1Q15276 862 aa13.02□□□□□ -0.33
SCN9A-205ENST00000454569 ANGEL2Q5VTE6 544 aaKnown RBP13.02□□□□□ -0.33
SCN9A-205ENST00000454569 PRAMEF18Q5VWM3 479 aa13.02□□□□□ -0.33
SCN9A-205ENST00000454569 CHRDL2Q6WN34 429 aa13.02□□□□□ -0.33
SCN9A-205ENST00000454569 RUFY3Q7L099 469 aa13.02□□□□□ -0.33
SCN9A-205ENST00000454569 TM6SF1Q9BZW5 370 aa13.02□□□□□ -0.33
SCN9A-205ENST00000454569 SENP2Q9HC62 589 aa13.02□□□□□ -0.33
SCN9A-205ENST00000454569 ZSWIM5Q9P217 1185 aa13.02□□□□□ -0.33
SCN9A-205ENST00000454569 ENTPD3O75355 529 aa13.01□□□□□ -0.33
SCN9A-205ENST00000454569 RPS6KB1P23443 525 aa13.01□□□□□ -0.33
SCN9A-205ENST00000454569 GABPAQ06546 454 aa13.01□□□□□ -0.33
SCN9A-205ENST00000454569 SHROOM1Q2M3G4 852 aaPredicted RBP13.01□□□□□ -0.33
SCN9A-205ENST00000454569 RRP12Q5JTH9 1297 aaKnown RBP13.01□□□□□ -0.33
SCN9A-205ENST00000454569 MFSD6Q6ZSS7 791 aa13.01□□□□□ -0.33
SCN9A-205ENST00000454569 NOL8Q76FK4 1167 aaKnown RBP13.01□□□□□ -0.33
SCN9A-205ENST00000454569 FAM151AQ8WW52 585 aa13.01□□□□□ -0.33
SCN9A-205ENST00000454569 MFRPQ9BY79 579 aa13.01□□□□□ -0.33
SCN9A-205ENST00000454569 ROBO3Q96MS0 1386 aa13.01□□□□□ -0.33
SCN9A-205ENST00000454569 GREB1LQ9C091 1923 aaPredicted RBP13□□□□□ -0.33
SCN9A-205ENST00000454569 ZC3H4Q9UPT8 1303 aaKnown RBP13□□□□□ -0.33
SCN9A-205ENST00000454569 KDM4AO75164 1064 aa13□□□□□ -0.33
SCN9A-205ENST00000454569 POTEIP0CG38 1075 aa13□□□□□ -0.33
SCN9A-205ENST00000454569 POTEJP0CG39 1038 aa13□□□□□ -0.33
SCN9A-205ENST00000454569 CDK8P49336 464 aa13□□□□□ -0.33
SCN9A-205ENST00000454569 AK2P54819 239 aa13□□□□□ -0.33
SCN9A-205ENST00000454569 TOB2Q14106 344 aaPredicted RBP13□□□□□ -0.33
SCN9A-205ENST00000454569 RASA3Q14644 834 aa13□□□□□ -0.33
SCN9A-205ENST00000454569 RRP1BQ14684 758 aaKnown RBP13□□□□□ -0.33
SCN9A-205ENST00000454569 FAM47AQ5JRC9 791 aa13□□□□□ -0.33
SCN9A-205ENST00000454569 BLOC1S2Q6QNY1 142 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms