RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 AFG3L2Q9Y4W6 797 aa8.67□□□□□ -1.02
VPS41-208ENST00000448833 FOCADQ5VW36 1801 aa8.66□□□□□ -1.02
VPS41-208ENST00000448833 MKI67P46013 3256 aaKnown RBP8.66□□□□□ -1.02
VPS41-208ENST00000448833 DDTLA6NHG4 134 aaPredicted RBP8.66□□□□□ -1.02
VPS41-208ENST00000448833 RHBDL3P58872 404 aa8.66□□□□□ -1.02
VPS41-208ENST00000448833 TNNI3KQ59H18 835 aa8.66□□□□□ -1.02
VPS41-208ENST00000448833 DIEXFQ68CQ4 756 aaKnown RBP8.66□□□□□ -1.02
VPS41-208ENST00000448833 FOXP4Q8IVH2 680 aaPredicted RBP8.66□□□□□ -1.02
VPS41-208ENST00000448833 ITPRIPQ8IWB1 547 aa8.66□□□□□ -1.02
VPS41-208ENST00000448833 ZFPM1Q8IX07 1006 aa8.66□□□□□ -1.02
VPS41-208ENST00000448833 TEX11Q8IYF3 940 aa8.66□□□□□ -1.02
VPS41-208ENST00000448833 PROCA1Q8NCQ7 364 aaPredicted RBP8.66□□□□□ -1.02
VPS41-208ENST00000448833 SMCR8Q8TEV9 937 aaPredicted RBP8.66□□□□□ -1.02
VPS41-208ENST00000448833 TRIM34Q9BYJ4 488 aa8.66□□□□□ -1.02
VPS41-208ENST00000448833 AS3MTQ9HBK9 375 aa8.66□□□□□ -1.02
VPS41-208ENST00000448833 SRRDQ9UH36 339 aa8.66□□□□□ -1.02
VPS41-208ENST00000448833 CPA4Q9UI42 421 aa8.66□□□□□ -1.02
VPS41-208ENST00000448833 NOP58Q9Y2X3 529 aaKnown RBP8.66□□□□□ -1.02
VPS41-208ENST00000448833 PTCH2Q9Y6C5 1203 aa8.66□□□□□ -1.02
VPS41-208ENST00000448833 FPGT-TNNI3KV9GXZ4 949 aa8.66□□□□□ -1.02
VPS41-208ENST00000448833 CDK5RAP2Q96SN8 1893 aa8.66□□□□□ -1.02
VPS41-208ENST00000448833 MAST2Q6P0Q8 1798 aa8.66□□□□□ -1.02
VPS41-208ENST00000448833 RFX7Q2KHR2 1363 aa8.65□□□□□ -1.02
VPS41-208ENST00000448833 MYH1P12882 1939 aa8.65□□□□□ -1.02
VPS41-208ENST00000448833 POTEFA5A3E0 1075 aa8.65□□□□□ -1.02
VPS41-208ENST00000448833 ZBTB7BO15156 539 aaPredicted RBP8.65□□□□□ -1.02
VPS41-208ENST00000448833 GRK4P32298 578 aa8.65□□□□□ -1.02
VPS41-208ENST00000448833 MCAMP43121 646 aa8.65□□□□□ -1.02
VPS41-208ENST00000448833 GCLCP48506 637 aaPredicted RBP8.65□□□□□ -1.02
VPS41-208ENST00000448833 PPP4CP60510 307 aa8.65□□□□□ -1.02
VPS41-208ENST00000448833 UBXN2AP68543 259 aa8.65□□□□□ -1.02
VPS41-208ENST00000448833 MOGSQ13724 837 aa8.65□□□□□ -1.02
VPS41-208ENST00000448833 GADL1Q6ZQY3 521 aa8.65□□□□□ -1.02
VPS41-208ENST00000448833 TBC1D9Q6ZT07 1266 aa8.65□□□□□ -1.02
VPS41-208ENST00000448833 MYO5AQ9Y4I1 1855 aaKnown RBP8.65□□□□□ -1.02
VPS41-208ENST00000448833 ZBED9Q6R2W3 1325 aa8.64□□□□□ -1.03
VPS41-208ENST00000448833 MYPNQ86TC9 1320 aa8.64□□□□□ -1.03
VPS41-208ENST00000448833 TRIM75PA6NK02 468 aa8.64□□□□□ -1.03
VPS41-208ENST00000448833 USP17L5A8MUK1 530 aa8.64□□□□□ -1.03
VPS41-208ENST00000448833 ASNSP08243 561 aa8.64□□□□□ -1.03
VPS41-208ENST00000448833 BCRP11274 1271 aa8.64□□□□□ -1.03
VPS41-208ENST00000448833 EN2P19622 333 aaPredicted RBP8.64□□□□□ -1.03
VPS41-208ENST00000448833 OSBPP22059 807 aa8.64□□□□□ -1.03
VPS41-208ENST00000448833 CAP2P40123 477 aa8.64□□□□□ -1.03
VPS41-208ENST00000448833 LHX8Q68G74 356 aa8.64□□□□□ -1.03
VPS41-208ENST00000448833 GPAT2Q6NUI2 795 aa8.64□□□□□ -1.03
VPS41-208ENST00000448833 SH3BP5LQ7L8J4 393 aa8.64□□□□□ -1.03
VPS41-208ENST00000448833 ZNF280CQ8ND82 737 aa8.64□□□□□ -1.03
VPS41-208ENST00000448833 SLAIN1Q8ND83 568 aa8.64□□□□□ -1.03
VPS41-208ENST00000448833 COA7Q96BR5 231 aa8.64□□□□□ -1.03
VPS41-208ENST00000448833 DDX4Q9NQI0 724 aaKnown RBP8.64□□□□□ -1.03
VPS41-208ENST00000448833 BIN2Q9UBW5 565 aaPredicted RBP8.64□□□□□ -1.03
VPS41-208ENST00000448833 AGTPBP1Q9UPW5 1226 aa8.64□□□□□ -1.03
VPS41-208ENST00000448833 BRCA2P51587 3418 aa8.63□□□□□ -1.03
VPS41-208ENST00000448833 ADGRA2Q96PE1 1338 aa8.63□□□□□ -1.03
VPS41-208ENST00000448833 C19orf81C9J6K1 198 aa8.63□□□□□ -1.03
VPS41-208ENST00000448833 TNPO2O14787 897 aaKnown RBP8.63□□□□□ -1.03
VPS41-208ENST00000448833 HMMRO75330 724 aa8.63□□□□□ -1.03
VPS41-208ENST00000448833 HLA-DOAP06340 250 aa8.63□□□□□ -1.03
VPS41-208ENST00000448833 MAP3K12Q12852 859 aa8.63□□□□□ -1.03
VPS41-208ENST00000448833 SPP2Q13103 211 aa8.63□□□□□ -1.03
VPS41-208ENST00000448833 TTF1Q15361 905 aaPredicted RBP8.63□□□□□ -1.03
VPS41-208ENST00000448833 MIER1Q8N108 512 aa8.63□□□□□ -1.03
VPS41-208ENST00000448833 CRACR2BQ8N4Y2 399 aaPredicted RBP8.63□□□□□ -1.03
VPS41-208ENST00000448833 PXYLP1Q8TE99 480 aa8.63□□□□□ -1.03
VPS41-208ENST00000448833 SH3TC2Q8TF17 1288 aa8.63□□□□□ -1.03
VPS41-208ENST00000448833 WDR18Q9BV38 432 aa8.63□□□□□ -1.03
VPS41-208ENST00000448833 ARHGAP39Q9C0H5 1083 aa8.63□□□□□ -1.03
VPS41-208ENST00000448833 TMOD4Q9NZQ9 345 aa8.63□□□□□ -1.03
VPS41-208ENST00000448833 LOC285556D6RIA3 1793 aa8.63□□□□□ -1.03
VPS41-208ENST00000448833 DOCK3Q8IZD9 2030 aa8.63□□□□□ -1.03
VPS41-208ENST00000448833 ZSWIM8A7E2V4 1837 aa8.62□□□□□ -1.03
VPS41-208ENST00000448833 CYP2E1P05181 493 aaPredicted RBP8.62□□□□□ -1.03
VPS41-208ENST00000448833 GJB1P08034 283 aa8.62□□□□□ -1.03
VPS41-208ENST00000448833 CYP2C8P10632 490 aa8.62□□□□□ -1.03
VPS41-208ENST00000448833 IRF5Q13568 498 aa8.62□□□□□ -1.03
VPS41-208ENST00000448833 FAM110CQ1W6H9 321 aa8.62□□□□□ -1.03
VPS41-208ENST00000448833 PI16Q6UXB8 463 aa8.62□□□□□ -1.03
VPS41-208ENST00000448833 METTL16Q86W50 562 aaKnown RBP8.62□□□□□ -1.03
VPS41-208ENST00000448833 RPAP2Q8IXW5 612 aaPredicted RBP8.62□□□□□ -1.03
VPS41-208ENST00000448833 CLASRPQ8N2M8 674 aaKnown RBP8.62□□□□□ -1.03
VPS41-208ENST00000448833 SH3RF3Q8TEJ3 882 aaPredicted RBP8.62□□□□□ -1.03
VPS41-208ENST00000448833 ZNF384Q8TF68 577 aa8.62□□□□□ -1.03
VPS41-208ENST00000448833 TGFBRAP1Q8WUH2 860 aa8.62□□□□□ -1.03
VPS41-208ENST00000448833 DBNDD2Q9BQY9 259 aa8.62□□□□□ -1.03
VPS41-208ENST00000448833 HTATIP2Q9BUP3 242 aa8.62□□□□□ -1.03
VPS41-208ENST00000448833 SNRKQ9NRH2 765 aa8.62□□□□□ -1.03
VPS41-208ENST00000448833 AATFQ9NY61 560 aaKnown RBP eCLIP8.62□□□□□ -1.03
VPS41-208ENST00000448833 TAOK2Q9UL54 1235 aa8.62□□□□□ -1.03
VPS41-208ENST00000448833 ADCY3O60266 1144 aa8.61□□□□□ -1.03
VPS41-208ENST00000448833 CYP7A1P22680 504 aa8.61□□□□□ -1.03
VPS41-208ENST00000448833 ZAP70P43403 619 aa8.61□□□□□ -1.03
VPS41-208ENST00000448833 USP5P45974 858 aa8.61□□□□□ -1.03
VPS41-208ENST00000448833 GJA8P48165 433 aa8.61□□□□□ -1.03
VPS41-208ENST00000448833 CAP1Q01518 475 aa8.61□□□□□ -1.03
VPS41-208ENST00000448833 SH3D19Q5HYK7 790 aa8.61□□□□□ -1.03
VPS41-208ENST00000448833 TTC6Q86TZ1 520 aa8.61□□□□□ -1.03
VPS41-208ENST00000448833 GTF3C2Q8WUA4 911 aaPredicted RBP8.61□□□□□ -1.03
VPS41-208ENST00000448833 RNF208Q9H0X6 261 aa8.61□□□□□ -1.03
VPS41-208ENST00000448833 DDX19BQ9UMR2 479 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms