RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 NUTM2DQ5VT03 806 aaPredicted RBP9.88□□□□□ -0.83
NIPBL-202ENST00000448238 NUTM2AQ8IVF1 878 aaPredicted RBP9.88□□□□□ -0.83
NIPBL-202ENST00000448238 ANGPTL2Q9UKU9 493 aa9.88□□□□□ -0.83
NIPBL-202ENST00000448238 ZBBXA8MT70 800 aa9.88□□□□□ -0.83
NIPBL-202ENST00000448238 ZSCAN26Q16670 478 aa9.88□□□□□ -0.83
NIPBL-202ENST00000448238 TMEM67Q5HYA8 995 aa9.88□□□□□ -0.83
NIPBL-202ENST00000448238 DACH2Q96NX9 599 aa9.88□□□□□ -0.83
NIPBL-202ENST00000448238 UPF3AQ9H1J1 476 aaKnown RBP9.88□□□□□ -0.83
NIPBL-202ENST00000448238 SLC5A1P13866 664 aa9.88□□□□□ -0.83
NIPBL-202ENST00000448238 ANO6Q4KMQ2 910 aa9.88□□□□□ -0.83
NIPBL-202ENST00000448238 LZICQ8WZA0 190 aa9.88□□□□□ -0.83
NIPBL-202ENST00000448238 NOB1Q9ULX3 412 aaKnown RBP9.88□□□□□ -0.83
NIPBL-202ENST00000448238 MX1P20591 662 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 PLEKHM3Q6ZWE6 761 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 NME8Q8N427 588 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 SPG7Q9UQ90 795 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 SPDYE3A6NKU9 549 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 KDM1AO60341 852 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 PHF21AQ96BD5 680 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 FNBP1Q96RU3 617 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 TTC1Q99614 292 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 IFIH1Q9BYX4 1025 aaKnown RBP9.87□□□□□ -0.83
NIPBL-202ENST00000448238 MINK1Q8N4C8 1332 aaPredicted RBP9.87□□□□□ -0.83
NIPBL-202ENST00000448238 S100BP04271 92 aaPredicted RBP9.87□□□□□ -0.83
NIPBL-202ENST00000448238 PYGMP11217 842 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 HLA-DPA1P20036 260 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 KRT71Q3SY84 523 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 MFSD6Q6ZSS7 791 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 TMTC3Q6ZXV5 915 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 LZTFL1Q9NQ48 299 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 CHCHD3Q9NX63 227 aaKnown RBP9.87□□□□□ -0.83
NIPBL-202ENST00000448238 DAB2P98082 770 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 IL1RL1Q01638 556 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 TRAIPQ9BWF2 469 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 RAB44Q7Z6P3 723 aaPredicted RBP9.87□□□□□ -0.83
NIPBL-202ENST00000448238 IQCDQ96DY2 449 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 RIC8AQ9NPQ8 531 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 EFCAB8A8MWE9 144 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 AKR1B15C9JRZ8 316 aaPredicted RBP9.87□□□□□ -0.83
NIPBL-202ENST00000448238 KRT2P35908 639 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 STX17P56962 302 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 CHMP6Q96FZ7 201 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 RMDN2Q96LZ7 410 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 STK24Q9Y6E0 443 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 DHX57Q6P158 1386 aaKnown RBP9.87□□□□□ -0.83
NIPBL-202ENST00000448238 MAP3K7O43318 606 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 RHOBTB1O94844 696 aa9.87□□□□□ -0.83
NIPBL-202ENST00000448238 GARSP41250 739 aaKnown RBP9.87□□□□□ -0.83
NIPBL-202ENST00000448238 SMCO2A6NFE2 343 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 CD2APQ9Y5K6 639 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 KRT7P08729 469 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 HCLS1P14317 486 aaPredicted RBP9.86□□□□□ -0.83
NIPBL-202ENST00000448238 FBXL13Q8NEE6 735 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 TNPO1Q92973 898 aaKnown RBP9.86□□□□□ -0.83
NIPBL-202ENST00000448238 TEKT1Q969V4 418 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 GPC4O75487 556 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 ATG16L1Q676U5 607 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 PDZD4Q76G19 769 aaPredicted RBP9.86□□□□□ -0.83
NIPBL-202ENST00000448238 TTC25Q96NG3 672 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 FGFR1OP2Q9NVK5 253 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 ARHGAP26Q9UNA1 814 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 ITM2BQ9Y287 266 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 TSPY2A6NKD2 308 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 NBNO60934 754 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 PYGBP11216 843 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 KRT5P13647 590 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 ST13P5Q8NFI4 369 aaPredicted RBP9.86□□□□□ -0.83
NIPBL-202ENST00000448238 GIPC2Q8TF65 315 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 GRK7Q8WTQ7 553 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 HDAC11Q96DB2 347 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 TTI1O43156 1089 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 SEPT2Q15019 361 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 BBOF1Q8ND07 529 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 WRNQ14191 1432 aaPredicted RBP eCLIP9.86□□□□□ -0.83
NIPBL-202ENST00000448238 DAB1O75553 588 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 MTRF1O75570 445 aaKnown RBP9.86□□□□□ -0.83
NIPBL-202ENST00000448238 MED21Q13503 144 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 TRIM63Q969Q1 353 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 RPS6KC1Q96S38 1066 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 MCF2LO15068 1137 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 TRPC1P48995 793 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 CCDC15Q0P6D6 951 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 ATP2B3Q16720 1220 aa9.86□□□□□ -0.83
NIPBL-202ENST00000448238 ACTR5Q9H9F9 607 aaPredicted RBP9.86□□□□□ -0.83
NIPBL-202ENST00000448238 DDX28Q9NUL7 540 aaKnown RBP9.86□□□□□ -0.83
NIPBL-202ENST00000448238 BASP1P80723 227 aaKnown RBP9.85□□□□□ -0.83
NIPBL-202ENST00000448238 SRRM1Q8IYB3 904 aaKnown RBP9.85□□□□□ -0.83
NIPBL-202ENST00000448238 CNNM2Q9H8M5 875 aa9.85□□□□□ -0.83
NIPBL-202ENST00000448238 DDX41Q9UJV9 622 aaKnown RBP9.85□□□□□ -0.83
NIPBL-202ENST00000448238 TSC1Q92574 1164 aa9.85□□□□□ -0.83
NIPBL-202ENST00000448238 CDKL2Q92772 493 aa9.85□□□□□ -0.83
NIPBL-202ENST00000448238 FAM212AQ96EL1 285 aa9.85□□□□□ -0.83
NIPBL-202ENST00000448238 ARHGAP10A1A4S6 786 aa9.85□□□□□ -0.83
NIPBL-202ENST00000448238 GSTA4O15217 222 aa9.85□□□□□ -0.83
NIPBL-202ENST00000448238 TRIML2Q8N7C3 387 aa9.85□□□□□ -0.83
NIPBL-202ENST00000448238 RTEL1Q9NZ71 1219 aa9.85□□□□□ -0.83
NIPBL-202ENST00000448238 CCPG1Q9ULG6 757 aa9.85□□□□□ -0.83
NIPBL-202ENST00000448238 HNRNPCP07910 306 aaKnown RBP eCLIP9.85□□□□□ -0.83
NIPBL-202ENST00000448238 DCUN1D2Q6PH85 259 aa9.85□□□□□ -0.83
NIPBL-202ENST00000448238 PIP4K2CQ8TBX8 421 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms