RNA–Protein interactions for RNA: ENST00000447873.5

SGCE-207, Transcript of sarcoglycan epsilon, humanhuman

TSL 1 (best) BASIC

Gene SGCE, Length 1,597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-207ENST00000447873 TNFAIP1Q13829 316 aa23.11■■□□□ 1.29
SGCE-207ENST00000447873 KRT23Q9C075 422 aa23.11■■□□□ 1.29
SGCE-207ENST00000447873 COL2A1P02458 1487 aaPredicted RBP23.11■■□□□ 1.29
SGCE-207ENST00000447873 RRP12Q5JTH9 1297 aaKnown RBP23.1■■□□□ 1.29
SGCE-207ENST00000447873 DYNLL2Q96FJ2 89 aa23.1■■□□□ 1.29
SGCE-207ENST00000447873 WDR90Q96KV7 1748 aa23.1■■□□□ 1.29
SGCE-207ENST00000447873 CNTNAP1P78357 1384 aa23.1■■□□□ 1.29
SGCE-207ENST00000447873 ATRNL1Q5VV63 1379 aa23.1■■□□□ 1.29
SGCE-207ENST00000447873 DDTLA6NHG4 134 aaPredicted RBP23.1■■□□□ 1.29
SGCE-207ENST00000447873 ST18O60284 1047 aa23.1■■□□□ 1.29
SGCE-207ENST00000447873 FGRP09769 529 aa23.1■■□□□ 1.29
SGCE-207ENST00000447873 RPS6KB1P23443 525 aa23.1■■□□□ 1.29
SGCE-207ENST00000447873 EPHX2P34913 555 aa23.1■■□□□ 1.29
SGCE-207ENST00000447873 ANGEL2Q5VTE6 544 aaKnown RBP23.1■■□□□ 1.29
SGCE-207ENST00000447873 SH3BP5LQ7L8J4 393 aa23.1■■□□□ 1.29
SGCE-207ENST00000447873 IL27Q8NEV9 243 aa23.1■■□□□ 1.29
SGCE-207ENST00000447873 ZNF287Q9HBT7 754 aa23.1■■□□□ 1.29
SGCE-207ENST00000447873 PI4KBQ9UBF8 816 aa23.1■■□□□ 1.29
SGCE-207ENST00000447873 TACC3Q9Y6A5 838 aa23.1■■□□□ 1.29
SGCE-207ENST00000447873 B4E1Z4 1266 aa23.09■■□□□ 1.29
SGCE-207ENST00000447873 DHX32Q7L7V1 743 aaKnown RBP23.09■■□□□ 1.29
SGCE-207ENST00000447873 SERPINB13Q9UIV8 391 aa23.09■■□□□ 1.29
SGCE-207ENST00000447873 PRDM1O75626 825 aa23.08■■□□□ 1.29
SGCE-207ENST00000447873 MCM5P33992 734 aa23.08■■□□□ 1.29
SGCE-207ENST00000447873 COL9A3Q14050 684 aaPredicted RBP23.08■■□□□ 1.29
SGCE-207ENST00000447873 USP50Q70EL3 339 aaPredicted RBP23.08■■□□□ 1.29
SGCE-207ENST00000447873 APOBEC3FQ8IUX4 373 aaKnown RBP23.08■■□□□ 1.29
SGCE-207ENST00000447873 MB21D2Q8IYB1 491 aaPredicted RBP23.08■■□□□ 1.29
SGCE-207ENST00000447873 ESR2Q92731 530 aa23.08■■□□□ 1.29
SGCE-207ENST00000447873 TMEM39BQ9GZU3 492 aa23.08■■□□□ 1.29
SGCE-207ENST00000447873 EHD4Q9H223 541 aa23.08■■□□□ 1.29
SGCE-207ENST00000447873 MKNK2Q9HBH9 465 aa23.08■■□□□ 1.29
SGCE-207ENST00000447873 PDRG1Q9NUG6 133 aa23.08■■□□□ 1.29
SGCE-207ENST00000447873 GGA3Q9NZ52 723 aa23.08■■□□□ 1.29
SGCE-207ENST00000447873 SCAF8Q9UPN6 1271 aaKnown RBP23.08■■□□□ 1.29
SGCE-207ENST00000447873 MYH8P13535 1937 aa23.07■■□□□ 1.28
SGCE-207ENST00000447873 ORC4O43929 436 aa23.07■■□□□ 1.28
SGCE-207ENST00000447873 RASA3Q14644 834 aa23.07■■□□□ 1.28
SGCE-207ENST00000447873 C16orf86Q6ZW13 317 aa23.07■■□□□ 1.28
SGCE-207ENST00000447873 CRACR2BQ8N4Y2 399 aaPredicted RBP23.07■■□□□ 1.28
SGCE-207ENST00000447873 CSRNP1Q96S65 589 aa23.07■■□□□ 1.28
SGCE-207ENST00000447873 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.07■■□□□ 1.28
SGCE-207ENST00000447873 KDM4AO75164 1064 aa23.06■■□□□ 1.28
SGCE-207ENST00000447873 SLC44A5Q8NCS7 719 aa23.06■■□□□ 1.28
SGCE-207ENST00000447873 TCEANC2Q96MN5 208 aa23.06■■□□□ 1.28
SGCE-207ENST00000447873 TRIM34Q9BYJ4 488 aa23.06■■□□□ 1.28
SGCE-207ENST00000447873 SIPA1L1O43166 1804 aa23.06■■□□□ 1.28
SGCE-207ENST00000447873 POLR2AP24928 1970 aaKnown RBP23.06■■□□□ 1.28
SGCE-207ENST00000447873 POTECB2RU33 542 aa23.06■■□□□ 1.28
SGCE-207ENST00000447873 RANBP6O60518 1105 aaKnown RBP23.06■■□□□ 1.28
SGCE-207ENST00000447873 CDK8P49336 464 aa23.06■■□□□ 1.28
SGCE-207ENST00000447873 GABPAQ06546 454 aa23.06■■□□□ 1.28
SGCE-207ENST00000447873 CHST3Q7LGC8 479 aa23.06■■□□□ 1.28
SGCE-207ENST00000447873 FOXP4Q8IVH2 680 aaPredicted RBP23.06■■□□□ 1.28
SGCE-207ENST00000447873 DEFB129Q9H1M3 183 aa23.06■■□□□ 1.28
SGCE-207ENST00000447873 TAF1DQ9H5J8 278 aaPredicted RBP23.06■■□□□ 1.28
SGCE-207ENST00000447873 SWAP70Q9UH65 585 aa23.06■■□□□ 1.28
SGCE-207ENST00000447873 PITPNM2Q9BZ72 1349 aa23.05■■□□□ 1.28
SGCE-207ENST00000447873 FGD1P98174 961 aa23.05■■□□□ 1.28
SGCE-207ENST00000447873 EXOSC10Q01780 885 aaKnown RBP23.05■■□□□ 1.28
SGCE-207ENST00000447873 ZNF444Q8N0Y2 327 aaPredicted RBP23.05■■□□□ 1.28
SGCE-207ENST00000447873 TTC14Q96N46 770 aa23.05■■□□□ 1.28
SGCE-207ENST00000447873 ZSWIM5Q9P217 1185 aa23.05■■□□□ 1.28
SGCE-207ENST00000447873 PRC1O43663 620 aa23.04■■□□□ 1.28
SGCE-207ENST00000447873 NT5C2P49902 561 aa23.04■■□□□ 1.28
SGCE-207ENST00000447873 PNMA8AQ86V59 439 aaPredicted RBP23.04■■□□□ 1.28
SGCE-207ENST00000447873 NKX2-3Q8TAU0 364 aa23.04■■□□□ 1.28
SGCE-207ENST00000447873 DCPSQ96C86 337 aaKnown RBP23.04■■□□□ 1.28
SGCE-207ENST00000447873 TAOK2Q9UL54 1235 aa23.04■■□□□ 1.28
SGCE-207ENST00000447873 WDR19Q8NEZ3 1342 aa23.03■■□□□ 1.28
SGCE-207ENST00000447873 ANTXR2P58335 489 aa23.03■■□□□ 1.28
SGCE-207ENST00000447873 EAPPQ56P03 285 aaPredicted RBP23.03■■□□□ 1.28
SGCE-207ENST00000447873 CYB5R4Q7L1T6 521 aa23.03■■□□□ 1.28
SGCE-207ENST00000447873 SNX21Q969T3 373 aa23.03■■□□□ 1.28
SGCE-207ENST00000447873 LRRC2Q9BYS8 371 aa23.03■■□□□ 1.28
SGCE-207ENST00000447873 TSPY2A6NKD2 308 aa23.02■■□□□ 1.28
SGCE-207ENST00000447873 CD2BP2O95400 341 aaKnown RBP23.02■■□□□ 1.28
SGCE-207ENST00000447873 AK2P54819 239 aa23.02■■□□□ 1.28
SGCE-207ENST00000447873 Q6ZUG5 572 aa23.02■■□□□ 1.28
SGCE-207ENST00000447873 ZC3H15Q8WU90 426 aaKnown RBP23.02■■□□□ 1.28
SGCE-207ENST00000447873 PGAP2Q9UHJ9 254 aa23.02■■□□□ 1.28
SGCE-207ENST00000447873 RASA1P20936 1047 aa23.01■■□□□ 1.27
SGCE-207ENST00000447873 FAM47AQ5JRC9 791 aa23.01■■□□□ 1.27
SGCE-207ENST00000447873 METTL16Q86W50 562 aaKnown RBP23.01■■□□□ 1.27
SGCE-207ENST00000447873 HSCBQ8IWL3 235 aa23.01■■□□□ 1.27
SGCE-207ENST00000447873 CDAN1Q8IWY9 1227 aa23.01■■□□□ 1.27
SGCE-207ENST00000447873 TEPSINQ96N21 525 aa23.01■■□□□ 1.27
SGCE-207ENST00000447873 ALDH8A1Q9H2A2 487 aaPredicted RBP23.01■■□□□ 1.27
SGCE-207ENST00000447873 HERC5Q9UII4 1024 aaKnown RBP23.01■■□□□ 1.27
SGCE-207ENST00000447873 FAM196BA6NMK8 535 aa23.01■■□□□ 1.27
SGCE-207ENST00000447873 VEGFAP15692 232 aaPredicted RBP23.01■■□□□ 1.27
SGCE-207ENST00000447873 SHMT1P34896 483 aa23.01■■□□□ 1.27
SGCE-207ENST00000447873 MCM2P49736 904 aa23.01■■□□□ 1.27
SGCE-207ENST00000447873 TFAP4Q01664 338 aa23.01■■□□□ 1.27
SGCE-207ENST00000447873 BECN1Q14457 450 aa23.01■■□□□ 1.27
SGCE-207ENST00000447873 SART3Q15020 963 aaKnown RBP23.01■■□□□ 1.27
SGCE-207ENST00000447873 ANKRD1Q15327 319 aa23.01■■□□□ 1.27
SGCE-207ENST00000447873 UBAC1Q9BSL1 405 aa23.01■■□□□ 1.27
SGCE-207ENST00000447873 RRAGCQ9HB90 399 aa23.01■■□□□ 1.27
SGCE-207ENST00000447873 PPP2R3BQ9Y5P8 575 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 106.5 ms