RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 RIOK1Q9BRS2 568 aaKnown RBP19.73■□□□□ 0.75
SF3A1-204ENST00000447376 SAP30BPQ9UHR5 308 aaKnown RBP19.73■□□□□ 0.75
SF3A1-204ENST00000447376 FOCADQ5VW36 1801 aa19.72■□□□□ 0.75
SF3A1-204ENST00000447376 CCL15-CCL14A0A0B4J2E2 113 aa19.72■□□□□ 0.75
SF3A1-204ENST00000447376 TCRBV5S4A2TA0A5A2 114 aa19.72■□□□□ 0.75
SF3A1-204ENST00000447376 GJA5P36382 358 aa19.72■□□□□ 0.75
SF3A1-204ENST00000447376 CCL15Q16663 113 aa19.72■□□□□ 0.75
SF3A1-204ENST00000447376 CHD1LQ86WJ1 897 aa19.72■□□□□ 0.75
SF3A1-204ENST00000447376 IFNL1Q8IU54 200 aa19.72■□□□□ 0.75
SF3A1-204ENST00000447376 FSD1Q9BTV5 496 aa19.72■□□□□ 0.75
SF3A1-204ENST00000447376 LNPKQ9C0E8 428 aa19.72■□□□□ 0.75
SF3A1-204ENST00000447376 PALD1Q9ULE6 856 aa19.72■□□□□ 0.75
SF3A1-204ENST00000447376 MYH7P12883 1935 aa19.71■□□□□ 0.75
SF3A1-204ENST00000447376 MBD4O95243 580 aa19.71■□□□□ 0.75
SF3A1-204ENST00000447376 POLR3DP05423 398 aaPredicted RBP19.71■□□□□ 0.75
SF3A1-204ENST00000447376 ERICH6BQ5W0A0 696 aa19.71■□□□□ 0.75
SF3A1-204ENST00000447376 CNKSR2Q8WXI2 1034 aa19.71■□□□□ 0.75
SF3A1-204ENST00000447376 PHF20L1A8MW92 1017 aa19.7■□□□□ 0.74
SF3A1-204ENST00000447376 IRF6O14896 467 aa19.7■□□□□ 0.74
SF3A1-204ENST00000447376 LCORLQ8N3X6 602 aa19.7■□□□□ 0.74
SF3A1-204ENST00000447376 PI4K2BQ8TCG2 481 aa19.7■□□□□ 0.74
SF3A1-204ENST00000447376 OTUD7AQ8TE49 926 aaPredicted RBP19.7■□□□□ 0.74
SF3A1-204ENST00000447376 TBC1D2Q9BYX2 928 aa19.7■□□□□ 0.74
SF3A1-204ENST00000447376 ARMT1Q9H993 441 aa19.7■□□□□ 0.74
SF3A1-204ENST00000447376 MCM9Q9NXL9 1143 aa19.7■□□□□ 0.74
SF3A1-204ENST00000447376 CDK5RAP2Q96SN8 1893 aa19.7■□□□□ 0.74
SF3A1-204ENST00000447376 FAM196BA6NMK8 535 aa19.69■□□□□ 0.74
SF3A1-204ENST00000447376 RNF113AO15541 343 aaKnown RBP19.69■□□□□ 0.74
SF3A1-204ENST00000447376 PDE1AP54750 535 aa19.69■□□□□ 0.74
SF3A1-204ENST00000447376 COL13A1Q5TAT6 717 aaPredicted RBP19.69■□□□□ 0.74
SF3A1-204ENST00000447376 TNS4Q8IZW8 715 aa19.69■□□□□ 0.74
SF3A1-204ENST00000447376 APPBP2Q92624 585 aa19.69■□□□□ 0.74
SF3A1-204ENST00000447376 ATP8A2Q9NTI2 1148 aa19.69■□□□□ 0.74
SF3A1-204ENST00000447376 STAP2Q9UGK3 403 aa19.69■□□□□ 0.74
SF3A1-204ENST00000447376 SERPINB13Q9UIV8 391 aa19.69■□□□□ 0.74
SF3A1-204ENST00000447376 ZHX2Q9Y6X8 837 aa19.69■□□□□ 0.74
SF3A1-204ENST00000447376 MYH1P12882 1939 aa19.68■□□□□ 0.74
SF3A1-204ENST00000447376 LAMB1P07942 1786 aa19.68■□□□□ 0.74
SF3A1-204ENST00000447376 TESPA1A2RU30 521 aaPredicted RBP19.68■□□□□ 0.74
SF3A1-204ENST00000447376 TBC1D8O95759 1140 aa19.68■□□□□ 0.74
SF3A1-204ENST00000447376 PTPRAP18433 802 aa19.68■□□□□ 0.74
SF3A1-204ENST00000447376 SLC4A8Q2Y0W8 1093 aa19.68■□□□□ 0.74
SF3A1-204ENST00000447376 EVI5LQ96CN4 794 aa19.68■□□□□ 0.74
SF3A1-204ENST00000447376 CCDC136Q96JN2 1154 aa19.68■□□□□ 0.74
SF3A1-204ENST00000447376 MS4A4AQ96JQ5 239 aa19.68■□□□□ 0.74
SF3A1-204ENST00000447376 EHD4Q9H223 541 aa19.68■□□□□ 0.74
SF3A1-204ENST00000447376 AS3MTQ9HBK9 375 aa19.68■□□□□ 0.74
SF3A1-204ENST00000447376 GINM1Q9NU53 330 aa19.68■□□□□ 0.74
SF3A1-204ENST00000447376 SLC4A4Q9Y6R1 1079 aa19.68■□□□□ 0.74
SF3A1-204ENST00000447376 DOCK1Q14185 1865 aa19.68■□□□□ 0.74
SF3A1-204ENST00000447376 IGF2BP3O00425 579 aaKnown RBP eCLIP19.67■□□□□ 0.74
SF3A1-204ENST00000447376 CXCL11O14625 94 aa19.67■□□□□ 0.74
SF3A1-204ENST00000447376 ASNSP08243 561 aa19.67■□□□□ 0.74
SF3A1-204ENST00000447376 CAP2P40123 477 aa19.67■□□□□ 0.74
SF3A1-204ENST00000447376 SDR42E1Q8WUS8 393 aa19.67■□□□□ 0.74
SF3A1-204ENST00000447376 CFHR5Q9BXR6 569 aa19.67■□□□□ 0.74
SF3A1-204ENST00000447376 SALL3Q9BXA9 1300 aa19.67■□□□□ 0.74
SF3A1-204ENST00000447376 NAV1Q8NEY1 1877 aa19.67■□□□□ 0.74
SF3A1-204ENST00000447376 GNAT2P19087 354 aa19.66■□□□□ 0.74
SF3A1-204ENST00000447376 TAF1CQ15572 869 aaPredicted RBP19.66■□□□□ 0.74
SF3A1-204ENST00000447376 CENPQQ7L2Z9 268 aaPredicted RBP19.66■□□□□ 0.74
SF3A1-204ENST00000447376 FASTKD5Q7L8L6 764 aaKnown RBP19.66■□□□□ 0.74
SF3A1-204ENST00000447376 BRI3BPQ8WY22 251 aa19.66■□□□□ 0.74
SF3A1-204ENST00000447376 ZFYVE28Q9HCC9 887 aa19.66■□□□□ 0.74
SF3A1-204ENST00000447376 ZCCHC17Q9NP64 241 aaKnown RBP19.66■□□□□ 0.74
SF3A1-204ENST00000447376 DCP1AQ9NPI6 582 aaPredicted RBP19.66■□□□□ 0.74
SF3A1-204ENST00000447376 TAOK2Q9UL54 1235 aa19.66■□□□□ 0.74
SF3A1-204ENST00000447376 KCNH4Q9UQ05 1017 aa19.66■□□□□ 0.74
SF3A1-204ENST00000447376 USP17L5A8MUK1 530 aa19.65■□□□□ 0.74
SF3A1-204ENST00000447376 TRIM6-TRIM34B2RNG4 842 aa19.65■□□□□ 0.74
SF3A1-204ENST00000447376 METTL16Q86W50 562 aaKnown RBP19.65■□□□□ 0.74
SF3A1-204ENST00000447376 PUS7LQ9H0K6 701 aaKnown RBP19.65■□□□□ 0.74
SF3A1-204ENST00000447376 CABP5Q9NP86 173 aa19.65■□□□□ 0.74
SF3A1-204ENST00000447376 SLFNL1Q499Z3 407 aa19.64■□□□□ 0.73
SF3A1-204ENST00000447376 NOM1Q5C9Z4 860 aaKnown RBP19.64■□□□□ 0.73
SF3A1-204ENST00000447376 TICAM2Q86XR7 235 aa19.64■□□□□ 0.73
SF3A1-204ENST00000447376 TRIM75PA6NK02 468 aa19.63■□□□□ 0.73
SF3A1-204ENST00000447376 GPR25O00155 361 aa19.63■□□□□ 0.73
SF3A1-204ENST00000447376 FKTNO75072 461 aa19.63■□□□□ 0.73
SF3A1-204ENST00000447376 APPP05067 770 aa19.63■□□□□ 0.73
SF3A1-204ENST00000447376 SLURP2P0DP57 97 aa19.63■□□□□ 0.73
SF3A1-204ENST00000447376 CERKLQ49MI3 558 aaPredicted RBP19.63■□□□□ 0.73
SF3A1-204ENST00000447376 GADL1Q6ZQY3 521 aa19.63■□□□□ 0.73
SF3A1-204ENST00000447376 ANKRD23Q86SG2 305 aa19.63■□□□□ 0.73
SF3A1-204ENST00000447376 PTPN18Q99952 460 aa19.63■□□□□ 0.73
SF3A1-204ENST00000447376 NACAP1Q9BZK3 213 aa19.63■□□□□ 0.73
SF3A1-204ENST00000447376 ARPP21Q9UBL0 812 aaPredicted RBP19.63■□□□□ 0.73
SF3A1-204ENST00000447376 SWAP70Q9UH65 585 aa19.63■□□□□ 0.73
SF3A1-204ENST00000447376 AFG3L2Q9Y4W6 797 aa19.63■□□□□ 0.73
SF3A1-204ENST00000447376 BTBD19C9JJ37 291 aa19.62■□□□□ 0.73
SF3A1-204ENST00000447376 PRKAB2O43741 272 aa19.62■□□□□ 0.73
SF3A1-204ENST00000447376 GDF11O95390 407 aa19.62■□□□□ 0.73
SF3A1-204ENST00000447376 ZNF280CQ8ND82 737 aa19.62■□□□□ 0.73
SF3A1-204ENST00000447376 OSBP2Q969R2 916 aa19.62■□□□□ 0.73
SF3A1-204ENST00000447376 RILPL2Q969X0 211 aa19.62■□□□□ 0.73
SF3A1-204ENST00000447376 STRBPQ96SI9 672 aaKnown RBP19.62■□□□□ 0.73
SF3A1-204ENST00000447376 DNAJC18Q9H819 358 aa19.62■□□□□ 0.73
SF3A1-204ENST00000447376 SIPA1L1O43166 1804 aa19.61■□□□□ 0.73
SF3A1-204ENST00000447376 ATAD5Q96QE3 1844 aa19.61■□□□□ 0.73
SF3A1-204ENST00000447376 A0A0G2JLL6 359 aaPredicted RBP19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms