RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 SOS1Q07889 1333 aaPredicted RBP3.16□□□□□ -1.9
LIG4-203ENST00000442234 E9PCH4 1651 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 GOLGA6L7A0A1B0GV03 622 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 FIBPO43427 364 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 CTCFP49711 727 aaPredicted RBP3.16□□□□□ -1.9
LIG4-203ENST00000442234 EVCP57679 992 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 SESN3P58005 492 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 ACTN3Q08043 901 aaPredicted RBP3.16□□□□□ -1.9
LIG4-203ENST00000442234 USP4Q13107 963 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 PTGDRQ13258 359 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 MYSM1Q5VVJ2 828 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 GIMAP6Q6P9H5 292 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 SEPT14Q6ZU15 432 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 NYAP1Q6ZVC0 841 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 SAMD7Q7Z3H4 446 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 ZNF454Q8N9F8 522 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 TRIML1Q8N9V2 468 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 CHAMP1Q96JM3 812 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 LNPKQ9C0E8 428 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 GBP3Q9H0R5 595 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 KCNF1Q9H3M0 494 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 PSD3Q9NYI0 1048 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 SWAP70Q9UH65 585 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 MYO3AQ8NEV4 1616 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 PALLDQ8WX93 1383 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 WNK3Q9BYP7 1800 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 ELP1O95163 1332 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 IL16Q14005 1332 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 WDR17Q8IZU2 1322 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 MUC6Q6W4X9 2439 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 PHLPP1O60346 1717 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 DYTNA2CJ06 578 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 EME2A4GXA9 379 aaPredicted RBP3.15□□□□□ -1.9
LIG4-203ENST00000442234 ATP5J2-PTCD1G3V325 749 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 ERC2O15083 957 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 NEMFO60524 1076 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 EPS15P42566 896 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 CCT5P48643 541 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 ICA1Q05084 483 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 PKP1Q13835 747 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 AMOTQ4VCS5 1084 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 FOXR1Q6PIV2 292 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 SLC30A9Q6PML9 568 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 TMC6Q7Z403 805 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 SDCCAG8Q86SQ7 713 aaPredicted RBP3.15□□□□□ -1.9
LIG4-203ENST00000442234 SLC51AQ86UW1 340 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 IQUBQ8NA54 791 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 CNNM3Q8NE01 707 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 TRIM11Q96F44 468 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 MTRQ99707 1265 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 TRAIPQ9BWF2 469 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 RABEP2Q9H5N1 569 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 CD248Q9HCU0 757 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 UBAP1Q9NZ09 502 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 MTMR7Q9Y216 660 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 ZBTB1Q9Y2K1 713 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 TRIM17Q9Y577 477 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 VWDEQ8N2E2 1590 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 DAPK1P53355 1430 aa3.15□□□□□ -1.9
LIG4-203ENST00000442234 FASNP49327 2511 aaKnown RBP3.15□□□□□ -1.91
LIG4-203ENST00000442234 GOLGA6L9A6NEM1 432 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 SMAPO00193 183 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 ZNF189O75820 626 aaPredicted RBP3.15□□□□□ -1.91
LIG4-203ENST00000442234 CRKLP46109 303 aaKnown RBP3.15□□□□□ -1.91
LIG4-203ENST00000442234 CAPRIN2Q6IMN6 1127 aaKnown RBP3.15□□□□□ -1.91
LIG4-203ENST00000442234 ZSCAN25Q6NSZ9 544 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 LRRC31Q6UY01 552 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 SPATA21Q7Z572 469 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 LUZP1Q86V48 1076 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 HOOK3Q86VS8 718 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 DRAXINQ8NBI3 349 aaPredicted RBP3.15□□□□□ -1.91
LIG4-203ENST00000442234 LINC00116Q8NCU8 138 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 ZC3H15Q8WU90 426 aaKnown RBP3.15□□□□□ -1.91
LIG4-203ENST00000442234 CTNNBL1Q8WYA6 563 aaPredicted RBP3.15□□□□□ -1.91
LIG4-203ENST00000442234 TATDN2Q93075 761 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 BICC1Q9H694 974 aaKnown RBP3.15□□□□□ -1.91
LIG4-203ENST00000442234 PDE11AQ9HCR9 933 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.15□□□□□ -1.91
LIG4-203ENST00000442234 INSRP06213 1382 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 MAP3K19Q56UN5 1328 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 CNOT1A5YKK6 2376 aaKnown RBP3.15□□□□□ -1.91
LIG4-203ENST00000442234 RREB1Q92766 1687 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 PLA2R1Q13018 1463 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 UBE2Q2LH0YL09 131 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 DLL1O00548 723 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 FYB1O15117 783 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 SGSM2O43147 1006 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 SASH1O94885 1247 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 CPP00450 1065 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 H2AFXP16104 143 aaPredicted RBP3.15□□□□□ -1.91
LIG4-203ENST00000442234 NAT1P18440 290 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 NEXNQ0ZGT2 675 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 ITPK1Q13572 414 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 PLEKHO1Q53GL0 409 aaPredicted RBP3.15□□□□□ -1.91
LIG4-203ENST00000442234 CCDC92Q53HC0 331 aaPredicted RBP3.15□□□□□ -1.91
LIG4-203ENST00000442234 ADGRD1Q6QNK2 874 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 SPNS2Q8IVW8 549 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 ZSCAN29Q8IWY8 852 aaPredicted RBP3.15□□□□□ -1.91
LIG4-203ENST00000442234 NIM1KQ8IY84 436 aa3.15□□□□□ -1.91
LIG4-203ENST00000442234 PHC3Q8NDX5 983 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms