RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 CASP8Q14790 479 aa10.28□□□□□ -0.76
COPB1-202ENST00000439561 PDIA6Q15084 440 aa10.28□□□□□ -0.76
COPB1-202ENST00000439561 SRLQ86TD4 932 aa10.28□□□□□ -0.76
COPB1-202ENST00000439561 DHX37Q8IY37 1157 aaKnown RBP10.28□□□□□ -0.76
COPB1-202ENST00000439561 UBAC1Q9BSL1 405 aa10.28□□□□□ -0.76
COPB1-202ENST00000439561 BLZF1Q9H2G9 400 aa10.28□□□□□ -0.76
COPB1-202ENST00000439561 XBP1P17861 261 aa10.27□□□□□ -0.77
COPB1-202ENST00000439561 VSNL1P62760 191 aa10.27□□□□□ -0.77
COPB1-202ENST00000439561 PIP4K2BP78356 416 aa10.27□□□□□ -0.77
COPB1-202ENST00000439561 E2F4Q16254 413 aa10.27□□□□□ -0.77
COPB1-202ENST00000439561 RTN1Q16799 776 aa10.27□□□□□ -0.77
COPB1-202ENST00000439561 FOXR1Q6PIV2 292 aa10.27□□□□□ -0.77
COPB1-202ENST00000439561 APOA5Q6Q788 366 aa10.27□□□□□ -0.77
COPB1-202ENST00000439561 FOXP4Q8IVH2 680 aaPredicted RBP10.27□□□□□ -0.77
COPB1-202ENST00000439561 IFNL2Q8IZJ0 200 aa10.27□□□□□ -0.77
COPB1-202ENST00000439561 AFAP1L1Q8TED9 768 aa10.27□□□□□ -0.77
COPB1-202ENST00000439561 SENP2Q9HC62 589 aa10.27□□□□□ -0.77
COPB1-202ENST00000439561 PEAK1Q9H792 1746 aa10.27□□□□□ -0.77
COPB1-202ENST00000439561 KRT9P35527 623 aa10.27□□□□□ -0.77
COPB1-202ENST00000439561 RFX5P48382 616 aaPredicted RBP10.27□□□□□ -0.77
COPB1-202ENST00000439561 SCARF1Q14162 830 aa10.27□□□□□ -0.77
COPB1-202ENST00000439561 TTC19Q6DKK2 380 aaPredicted RBP10.27□□□□□ -0.77
COPB1-202ENST00000439561 NOSTRINQ8IVI9 506 aa10.27□□□□□ -0.77
COPB1-202ENST00000439561 PNKPQ96T60 521 aa10.27□□□□□ -0.77
COPB1-202ENST00000439561 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.27□□□□□ -0.77
COPB1-202ENST00000439561 CEP131Q9UPN4 1083 aa10.27□□□□□ -0.77
COPB1-202ENST00000439561 TBX22Q9Y458 520 aa10.27□□□□□ -0.77
COPB1-202ENST00000439561 FANCGO15287 622 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 PPP6R2O75170 966 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 CDC25AP30304 524 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 MAP9Q49MG5 647 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 RAD9BQ6WBX8 426 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 PLBD2Q8NHP8 589 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 CABLES1Q8TDN4 633 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 HPS5Q9UPZ3 1129 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 ZMYM6O95789 1325 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 MNAT1P51948 309 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 ZNF174Q15697 407 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 RESP18Q5W5W9 173 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 USP49Q70CQ1 688 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 CNGA4Q8IV77 575 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 GSPT2Q8IYD1 628 aaKnown RBP10.26□□□□□ -0.77
COPB1-202ENST00000439561 PSMB7Q99436 277 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 CENPHQ9H3R5 247 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 TUBE1Q9UJT0 475 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 PCDHB6Q9Y5E3 794 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 TULP1O00294 542 aaPredicted RBP10.26□□□□□ -0.77
COPB1-202ENST00000439561 ANTXR2P58335 489 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 MRPS25P82663 173 aaKnown RBP10.26□□□□□ -0.77
COPB1-202ENST00000439561 UBXN1Q04323 297 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 WTAPQ15007 396 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 CCDC122Q5T0U0 273 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 CYB5R4Q7L1T6 521 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 CSRNP2Q9H175 543 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 INTS13Q9NVM9 706 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 ZNHIT6Q9NWK9 470 aaKnown RBP10.26□□□□□ -0.77
COPB1-202ENST00000439561 FAM53CQ9NYF3 392 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 MAGEC2Q9UBF1 373 aaPredicted RBP10.26□□□□□ -0.77
COPB1-202ENST00000439561 AXIN2Q9Y2T1 843 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 ADGRG1Q9Y653 693 aa10.26□□□□□ -0.77
COPB1-202ENST00000439561 TULP2O00295 520 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 RNF40O75150 1001 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 LIG3P49916 1009 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 KANK3Q6NY19 840 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 MFSD6Q6ZSS7 791 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 MB21D2Q8IYB1 491 aaPredicted RBP10.25□□□□□ -0.77
COPB1-202ENST00000439561 RIN2Q8WYP3 895 aaPredicted RBP10.25□□□□□ -0.77
COPB1-202ENST00000439561 FAM107BQ9H098 131 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 BRMS1Q9HCU9 246 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 IQSEC3Q9UPP2 1182 aaPredicted RBP10.25□□□□□ -0.77
COPB1-202ENST00000439561 SALL1Q9NSC2 1324 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 MACROD2A1Z1Q3 448 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 TRIM75PA6NK02 468 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 EIF3CLB5ME19 914 aaKnown RBP10.25□□□□□ -0.77
COPB1-202ENST00000439561 SETQ01105 290 aaPredicted RBP10.25□□□□□ -0.77
COPB1-202ENST00000439561 MUM1L1Q5H9M0 696 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 TBC1D10CQ8IV04 446 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 NOC3LQ8WTT2 800 aaKnown RBP10.25□□□□□ -0.77
COPB1-202ENST00000439561 PLIN2Q99541 437 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 EIF3CQ99613 913 aaKnown RBP10.25□□□□□ -0.77
COPB1-202ENST00000439561 KCND1Q9NSA2 647 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 SRGAP2O75044 1071 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 CCDC181Q5TID7 509 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 ATG9AQ7Z3C6 839 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 MIGA1Q8NAN2 632 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 ENOX1Q8TC92 643 aaKnown RBP10.25□□□□□ -0.77
COPB1-202ENST00000439561 EPSTI1Q96J88 318 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 CTAGE1Q96RT6 745 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 VPS54Q9P1Q0 977 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 WWC3Q9ULE0 1092 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 MYO6Q9UM54 1294 aa10.25□□□□□ -0.77
COPB1-202ENST00000439561 TTF2Q9UNY4 1162 aaKnown RBP10.25□□□□□ -0.77
COPB1-202ENST00000439561 PLCD1P51178 756 aa10.24□□□□□ -0.77
COPB1-202ENST00000439561 RILPL1Q5EBL4 403 aa10.24□□□□□ -0.77
COPB1-202ENST00000439561 NOA1Q8NC60 698 aaKnown RBP10.24□□□□□ -0.77
COPB1-202ENST00000439561 HDAC6Q9UBN7 1215 aa10.24□□□□□ -0.77
COPB1-202ENST00000439561 ABCF2Q9UG63 623 aa10.24□□□□□ -0.77
COPB1-202ENST00000439561 ZNF532Q9HCE3 1301 aa10.24□□□□□ -0.77
COPB1-202ENST00000439561 SHTN1A0MZ66 631 aa10.24□□□□□ -0.77
COPB1-202ENST00000439561 PRDM1O75626 825 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms