RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 NEFMP07197 916 aa6.66□□□□□ -1.34
USP40-204ENST00000427947 MAP4P27816 1152 aaKnown RBP6.66□□□□□ -1.34
USP40-204ENST00000427947 NTF4P34130 210 aa6.66□□□□□ -1.34
USP40-204ENST00000427947 NAALADL2Q58DX5 795 aa6.66□□□□□ -1.34
USP40-204ENST00000427947 GPAT2Q6NUI2 795 aa6.66□□□□□ -1.34
USP40-204ENST00000427947 FAM20CQ8IXL6 584 aa6.66□□□□□ -1.34
USP40-204ENST00000427947 SMYD4Q8IYR2 804 aaPredicted RBP6.66□□□□□ -1.34
USP40-204ENST00000427947 SSU72Q9NP77 194 aaKnown RBP6.66□□□□□ -1.34
USP40-204ENST00000427947 POLR3KQ9Y2Y1 108 aaPredicted RBP6.66□□□□□ -1.34
USP40-204ENST00000427947 DAGLAQ9Y4D2 1042 aa6.66□□□□□ -1.34
USP40-204ENST00000427947 CORINQ9Y5Q5 1042 aa6.66□□□□□ -1.34
USP40-204ENST00000427947 PROCP04070 461 aa6.65□□□□□ -1.34
USP40-204ENST00000427947 PGRP06401 933 aa6.65□□□□□ -1.34
USP40-204ENST00000427947 GRK4P32298 578 aa6.65□□□□□ -1.34
USP40-204ENST00000427947 PDE4BQ07343 736 aa6.65□□□□□ -1.34
USP40-204ENST00000427947 DOC2BQ14184 412 aa6.65□□□□□ -1.34
USP40-204ENST00000427947 GK5Q6ZS86 529 aa6.65□□□□□ -1.34
USP40-204ENST00000427947 SLITRK4Q8IW52 837 aa6.65□□□□□ -1.34
USP40-204ENST00000427947 RASGRP4Q8TDF6 673 aa6.65□□□□□ -1.34
USP40-204ENST00000427947 ISL2Q96A47 359 aa6.65□□□□□ -1.34
USP40-204ENST00000427947 SPATA32Q96LK8 384 aa6.65□□□□□ -1.34
USP40-204ENST00000427947 SPOCK3Q9BQ16 436 aa6.65□□□□□ -1.34
USP40-204ENST00000427947 WNT10AQ9GZT5 417 aa6.65□□□□□ -1.34
USP40-204ENST00000427947 SEMA6CQ9H3T2 930 aa6.65□□□□□ -1.34
USP40-204ENST00000427947 ACSS3Q9H6R3 686 aa6.65□□□□□ -1.34
USP40-204ENST00000427947 LGR6Q9HBX8 967 aa6.65□□□□□ -1.34
USP40-204ENST00000427947 MSTNO14793 375 aa6.64□□□□□ -1.35
USP40-204ENST00000427947 NFICP08651 508 aa6.64□□□□□ -1.35
USP40-204ENST00000427947 PLCG1P19174 1290 aa6.64□□□□□ -1.35
USP40-204ENST00000427947 ZNF165P49910 485 aa6.64□□□□□ -1.35
USP40-204ENST00000427947 BEND4Q6ZU67 534 aa6.64□□□□□ -1.35
USP40-204ENST00000427947 CDC37L1Q7L3B6 337 aa6.64□□□□□ -1.35
USP40-204ENST00000427947 UBE3DQ7Z6J8 389 aa6.64□□□□□ -1.35
USP40-204ENST00000427947 C8orf37Q96NL8 207 aa6.64□□□□□ -1.35
USP40-204ENST00000427947 EFR3BQ9Y2G0 817 aa6.64□□□□□ -1.35
USP40-204ENST00000427947 PCDHB14Q9Y5E9 798 aa6.64□□□□□ -1.35
USP40-204ENST00000427947 TACC3Q9Y6A5 838 aa6.64□□□□□ -1.35
USP40-204ENST00000427947 FAM95CA0A1B0GW59 222 aa6.63□□□□□ -1.35
USP40-204ENST00000427947 HTR3BO95264 441 aa6.63□□□□□ -1.35
USP40-204ENST00000427947 DNAJA1P31689 397 aaKnown RBP6.63□□□□□ -1.35
USP40-204ENST00000427947 MAP7Q14244 749 aa6.63□□□□□ -1.35
USP40-204ENST00000427947 NFKBIBQ15653 356 aa6.63□□□□□ -1.35
USP40-204ENST00000427947 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.63□□□□□ -1.35
USP40-204ENST00000427947 ZNF507Q8TCN5 953 aa6.63□□□□□ -1.35
USP40-204ENST00000427947 EZH1Q92800 747 aaPredicted RBP6.63□□□□□ -1.35
USP40-204ENST00000427947 FBRSQ9HAH7 460 aa6.63□□□□□ -1.35
USP40-204ENST00000427947 GINM1Q9NU53 330 aa6.63□□□□□ -1.35
USP40-204ENST00000427947 RAXQ9Y2V3 346 aa6.63□□□□□ -1.35
USP40-204ENST00000427947 PRR36Q9H6K5 1346 aa6.62□□□□□ -1.35
USP40-204ENST00000427947 HMX2A2RU54 273 aa6.62□□□□□ -1.35
USP40-204ENST00000427947 DYNC1LI2O43237 492 aaPredicted RBP6.62□□□□□ -1.35
USP40-204ENST00000427947 NASPP49321 788 aaPredicted RBP6.62□□□□□ -1.35
USP40-204ENST00000427947 CLCQ05315 142 aa6.62□□□□□ -1.35
USP40-204ENST00000427947 COL9A2Q14055 689 aaPredicted RBP6.62□□□□□ -1.35
USP40-204ENST00000427947 PAOXQ6QHF9 649 aa6.62□□□□□ -1.35
USP40-204ENST00000427947 PRR23CQ6ZRP0 262 aa6.62□□□□□ -1.35
USP40-204ENST00000427947 VPS37DQ86XT2 251 aa6.62□□□□□ -1.35
USP40-204ENST00000427947 CLEC10AQ8IUN9 316 aa6.62□□□□□ -1.35
USP40-204ENST00000427947 REXO1Q8N1G1 1221 aaKnown RBP6.62□□□□□ -1.35
USP40-204ENST00000427947 KCT2Q8NC54 265 aa6.62□□□□□ -1.35
USP40-204ENST00000427947 STOML1Q9UBI4 398 aa6.62□□□□□ -1.35
USP40-204ENST00000427947 REV1Q9UBZ9 1251 aa6.62□□□□□ -1.35
USP40-204ENST00000427947 PCOLCE2Q9UKZ9 415 aa6.62□□□□□ -1.35
USP40-204ENST00000427947 PPT2Q9UMR5 302 aa6.62□□□□□ -1.35
USP40-204ENST00000427947 ATF4P18848 351 aaPredicted RBP6.61□□□□□ -1.35
USP40-204ENST00000427947 SOX9P48436 509 aa6.61□□□□□ -1.35
USP40-204ENST00000427947 NKG7Q16617 165 aa6.61□□□□□ -1.35
USP40-204ENST00000427947 FBXW10Q5XX13 1052 aa6.61□□□□□ -1.35
USP40-204ENST00000427947 CCDC81Q6ZN84 652 aa6.61□□□□□ -1.35
USP40-204ENST00000427947 HID1Q8IV36 788 aa6.61□□□□□ -1.35
USP40-204ENST00000427947 ACSF2Q96CM8 615 aaPredicted RBP6.61□□□□□ -1.35
USP40-204ENST00000427947 FERD3LQ96RJ6 166 aa6.61□□□□□ -1.35
USP40-204ENST00000427947 C7orf69Q9H7B7 122 aa6.61□□□□□ -1.35
USP40-204ENST00000427947 KLHL3Q9UH77 587 aa6.61□□□□□ -1.35
USP40-204ENST00000427947 ADAM30Q9UKF2 790 aa6.61□□□□□ -1.35
USP40-204ENST00000427947 ATE1O95260 518 aa6.6□□□□□ -1.35
USP40-204ENST00000427947 ARID5AQ03989 594 aa6.6□□□□□ -1.35
USP40-204ENST00000427947 MLECQ14165 292 aa6.6□□□□□ -1.35
USP40-204ENST00000427947 SLC43A3Q8NBI5 491 aa6.6□□□□□ -1.35
USP40-204ENST00000427947 SEC16BQ96JE7 1060 aa6.6□□□□□ -1.35
USP40-204ENST00000427947 TMEM87BQ96K49 555 aa6.6□□□□□ -1.35
USP40-204ENST00000427947 DPH2Q9BQC3 489 aaPredicted RBP6.6□□□□□ -1.35
USP40-204ENST00000427947 FAM83CQ9BQN1 747 aa6.6□□□□□ -1.35
USP40-204ENST00000427947 EHMT1Q9H9B1 1298 aa6.6□□□□□ -1.35
USP40-204ENST00000427947 TJP2Q9UDY2 1190 aa6.6□□□□□ -1.35
USP40-204ENST00000427947 IGHA1P01876 353 aa6.59□□□□□ -1.35
USP40-204ENST00000427947 CDK5R2Q13319 367 aa6.59□□□□□ -1.35
USP40-204ENST00000427947 SLBPQ14493 270 aaKnown RBP eCLIP6.59□□□□□ -1.35
USP40-204ENST00000427947 TMEM201Q5SNT2 666 aa6.59□□□□□ -1.35
USP40-204ENST00000427947 MCATQ8IVS2 390 aaKnown RBP6.59□□□□□ -1.35
USP40-204ENST00000427947 MRPL41Q8IXM3 137 aaKnown RBP6.59□□□□□ -1.35
USP40-204ENST00000427947 FAM13CQ8NE31 585 aa6.59□□□□□ -1.35
USP40-204ENST00000427947 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.59□□□□□ -1.35
USP40-204ENST00000427947 ZNRF3Q9ULT6 936 aa6.59□□□□□ -1.35
USP40-204ENST00000427947 UPK3BL1B0FP48 263 aa6.58□□□□□ -1.36
USP40-204ENST00000427947 UPK3BL2E5RIL1 263 aa6.58□□□□□ -1.36
USP40-204ENST00000427947 DNAJA2O60884 412 aa6.58□□□□□ -1.36
USP40-204ENST00000427947 H2AFB1P0C5Y9 115 aa6.58□□□□□ -1.36
USP40-204ENST00000427947 H2AFB2P0C5Z0 115 aa6.58□□□□□ -1.36
USP40-204ENST00000427947 YARSP54577 528 aaKnown RBP6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms