RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 IFNL3Q8IZI9 196 aa16.47■□□□□ 0.23
LIG1-202ENST00000427526 SPATA5Q8NB90 893 aa16.47■□□□□ 0.23
LIG1-202ENST00000427526 NARFQ9UHQ1 456 aa16.47■□□□□ 0.23
LIG1-202ENST00000427526 SPDYE4A6NLX3 237 aa16.46■□□□□ 0.23
LIG1-202ENST00000427526 UBE2Q2LH0YL09 131 aa16.46■□□□□ 0.23
LIG1-202ENST00000427526 FANCCQ00597 558 aa16.46■□□□□ 0.23
LIG1-202ENST00000427526 TMEM67Q5HYA8 995 aa16.46■□□□□ 0.23
LIG1-202ENST00000427526 ISM2Q6H9L7 571 aa16.46■□□□□ 0.23
LIG1-202ENST00000427526 PRDM10Q9NQV6 1147 aa16.46■□□□□ 0.23
LIG1-202ENST00000427526 STK36Q9NRP7 1315 aa16.46■□□□□ 0.23
LIG1-202ENST00000427526 RTL9Q8NET4 1388 aa16.46■□□□□ 0.23
LIG1-202ENST00000427526 ARAP2Q8WZ64 1704 aa16.46■□□□□ 0.23
LIG1-202ENST00000427526 GOLGA8AA7E2F4 631 aa16.46■□□□□ 0.23
LIG1-202ENST00000427526 KIF2AO00139 706 aaPredicted RBP16.46■□□□□ 0.23
LIG1-202ENST00000427526 LMOD1P29536 600 aaPredicted RBP16.46■□□□□ 0.23
LIG1-202ENST00000427526 DHX8Q14562 1220 aaKnown RBP16.46■□□□□ 0.23
LIG1-202ENST00000427526 KIF18AQ8NI77 898 aa16.46■□□□□ 0.23
LIG1-202ENST00000427526 IPO4Q8TEX9 1081 aaKnown RBP16.46■□□□□ 0.23
LIG1-202ENST00000427526 CLIC6Q96NY7 704 aa16.46■□□□□ 0.23
LIG1-202ENST00000427526 MYL10Q9BUA6 226 aa16.46■□□□□ 0.23
LIG1-202ENST00000427526 CGNQ9P2M7 1197 aaKnown RBP16.46■□□□□ 0.23
LIG1-202ENST00000427526 ZHX1Q9UKY1 873 aaPredicted RBP16.46■□□□□ 0.23
LIG1-202ENST00000427526 PSDA5PKW4 1024 aaPredicted RBP16.45■□□□□ 0.22
LIG1-202ENST00000427526 ATP1A3P13637 1013 aa16.45■□□□□ 0.22
LIG1-202ENST00000427526 NFXL1Q6ZNB6 911 aa16.45■□□□□ 0.22
LIG1-202ENST00000427526 ZNF215Q9UL58 517 aaPredicted RBP16.45■□□□□ 0.22
LIG1-202ENST00000427526 NID2Q14112 1375 aa16.45■□□□□ 0.22
LIG1-202ENST00000427526 CUTAO60888 179 aa16.45■□□□□ 0.22
LIG1-202ENST00000427526 SFPQP23246 707 aaKnown RBP eCLIP16.45■□□□□ 0.22
LIG1-202ENST00000427526 PNOCQ13519 176 aa16.45■□□□□ 0.22
LIG1-202ENST00000427526 FOXP4Q8IVH2 680 aaPredicted RBP16.45■□□□□ 0.22
LIG1-202ENST00000427526 SEPT12Q8IYM1 358 aa16.45■□□□□ 0.22
LIG1-202ENST00000427526 ARHGEF1Q92888 912 aaKnown RBP16.45■□□□□ 0.22
LIG1-202ENST00000427526 CDC5LQ99459 802 aaKnown RBP16.45■□□□□ 0.22
LIG1-202ENST00000427526 ZPR1O75312 459 aa16.45■□□□□ 0.22
LIG1-202ENST00000427526 FMNL1O95466 1100 aaPredicted RBP16.45■□□□□ 0.22
LIG1-202ENST00000427526 CTDSPL2Q05D32 466 aa16.45■□□□□ 0.22
LIG1-202ENST00000427526 GNL2Q13823 731 aaKnown RBP16.45■□□□□ 0.22
LIG1-202ENST00000427526 SF3B3Q15393 1217 aaKnown RBP16.45■□□□□ 0.22
LIG1-202ENST00000427526 METTL16Q86W50 562 aaKnown RBP16.45■□□□□ 0.22
LIG1-202ENST00000427526 PPP1R13BQ96KQ4 1090 aa16.45■□□□□ 0.22
LIG1-202ENST00000427526 IQSEC3Q9UPP2 1182 aaPredicted RBP16.45■□□□□ 0.22
LIG1-202ENST00000427526 RTCBQ9Y3I0 505 aaKnown RBP16.45■□□□□ 0.22
LIG1-202ENST00000427526 DOCK2Q92608 1830 aa16.44■□□□□ 0.22
LIG1-202ENST00000427526 GSG1L2A8MUP6 293 aa16.44■□□□□ 0.22
LIG1-202ENST00000427526 TRIM29Q14134 588 aa16.44■□□□□ 0.22
LIG1-202ENST00000427526 LONRF3Q496Y0 759 aa16.44■□□□□ 0.22
LIG1-202ENST00000427526 MAGEB6Q8N7X4 407 aa16.44■□□□□ 0.22
LIG1-202ENST00000427526 SETDB2Q96T68 719 aa16.44■□□□□ 0.22
LIG1-202ENST00000427526 SLC12A7Q9Y666 1083 aa16.44■□□□□ 0.22
LIG1-202ENST00000427526 THSD7AQ9UPZ6 1657 aa16.44■□□□□ 0.22
LIG1-202ENST00000427526 MBD4O95243 580 aa16.44■□□□□ 0.22
LIG1-202ENST00000427526 IFNAR1P17181 557 aa16.44■□□□□ 0.22
LIG1-202ENST00000427526 DMTNQ08495 405 aa16.44■□□□□ 0.22
LIG1-202ENST00000427526 SSRP1Q08945 709 aaKnown RBP16.44■□□□□ 0.22
LIG1-202ENST00000427526 ANKRD18AQ8IVF6 992 aa16.44■□□□□ 0.22
LIG1-202ENST00000427526 ELOA2Q8IYF1 753 aaPredicted RBP16.44■□□□□ 0.22
LIG1-202ENST00000427526 CELF1Q92879 486 aaKnown RBP16.44■□□□□ 0.22
LIG1-202ENST00000427526 NAPBQ9H115 298 aa16.44■□□□□ 0.22
LIG1-202ENST00000427526 BTAF1O14981 1849 aa16.43■□□□□ 0.22
LIG1-202ENST00000427526 IFIT3O14879 490 aaKnown RBP16.43■□□□□ 0.22
LIG1-202ENST00000427526 MDM2Q00987 491 aaPredicted RBP16.43■□□□□ 0.22
LIG1-202ENST00000427526 MYL5Q02045 173 aa16.43■□□□□ 0.22
LIG1-202ENST00000427526 MAP3K12Q12852 859 aa16.43■□□□□ 0.22
LIG1-202ENST00000427526 AKNAD1Q5T1N1 836 aa16.43■□□□□ 0.22
LIG1-202ENST00000427526 UTP14CQ5TAP6 766 aaKnown RBP16.43■□□□□ 0.22
LIG1-202ENST00000427526 KRBA2Q6ZNG9 492 aa16.43■□□□□ 0.22
LIG1-202ENST00000427526 SLC26A6Q9BXS9 759 aa16.43■□□□□ 0.22
LIG1-202ENST00000427526 CNNM2Q9H8M5 875 aa16.43■□□□□ 0.22
LIG1-202ENST00000427526 KCNH3Q9ULD8 1083 aa16.43■□□□□ 0.22
LIG1-202ENST00000427526 TIAM2Q8IVF5 1701 aa16.43■□□□□ 0.22
LIG1-202ENST00000427526 NBPF5PQ86XG9 351 aaPredicted RBP16.43■□□□□ 0.22
LIG1-202ENST00000427526 NOSTRINQ8IVI9 506 aa16.43■□□□□ 0.22
LIG1-202ENST00000427526 OGFRQ9NZT2 677 aa16.43■□□□□ 0.22
LIG1-202ENST00000427526 TOB1P50616 345 aaPredicted RBP16.43■□□□□ 0.22
LIG1-202ENST00000427526 SLC10A5Q5PT55 438 aa16.43■□□□□ 0.22
LIG1-202ENST00000427526 DPF2Q92785 391 aa16.43■□□□□ 0.22
LIG1-202ENST00000427526 ERO1AQ96HE7 468 aa16.43■□□□□ 0.22
LIG1-202ENST00000427526 ARMT1Q9H993 441 aa16.43■□□□□ 0.22
LIG1-202ENST00000427526 ZNF831Q5JPB2 1677 aa16.42■□□□□ 0.22
LIG1-202ENST00000427526 BCORQ6W2J9 1755 aa16.42■□□□□ 0.22
LIG1-202ENST00000427526 GUCY1A2P33402 732 aa16.42■□□□□ 0.22
LIG1-202ENST00000427526 STK11IPQ8N1F8 1099 aa16.42■□□□□ 0.22
LIG1-202ENST00000427526 KRT23Q9C075 422 aa16.42■□□□□ 0.22
LIG1-202ENST00000427526 TMX1Q9H3N1 280 aa16.42■□□□□ 0.22
LIG1-202ENST00000427526 L2HGDHQ9H9P8 463 aa16.42■□□□□ 0.22
LIG1-202ENST00000427526 ONECUT3O60422 494 aaPredicted RBP16.42■□□□□ 0.22
LIG1-202ENST00000427526 MMP1P03956 469 aa16.42■□□□□ 0.22
LIG1-202ENST00000427526 BMP6P22004 513 aa16.42■□□□□ 0.22
LIG1-202ENST00000427526 KRI1Q8N9T8 703 aaKnown RBP16.42■□□□□ 0.22
LIG1-202ENST00000427526 STAG1Q8WVM7 1258 aa16.42■□□□□ 0.22
LIG1-202ENST00000427526 PCDHA5Q9Y5H7 936 aa16.42■□□□□ 0.22
LIG1-202ENST00000427526 CHD4Q14839 1912 aa16.42■□□□□ 0.22
LIG1-202ENST00000427526 BTBD18B2RXH4 712 aa16.41■□□□□ 0.22
LIG1-202ENST00000427526 GYG1P46976 350 aa16.41■□□□□ 0.22
LIG1-202ENST00000427526 UBASH3AP57075 661 aa16.41■□□□□ 0.22
LIG1-202ENST00000427526 MFSD6Q6ZSS7 791 aa16.41■□□□□ 0.22
LIG1-202ENST00000427526 WASF1Q92558 559 aa16.41■□□□□ 0.22
LIG1-202ENST00000427526 BSDC1Q9NW68 430 aaPredicted RBP16.41■□□□□ 0.22
LIG1-202ENST00000427526 DDX41Q9UJV9 622 aaKnown RBP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms