RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 USP17L3A6NCW0 530 aa13.79□□□□□ -0.2
PTPRN-204ENST00000423636 USP17L4A6NCW7 530 aa13.79□□□□□ -0.2
PTPRN-204ENST00000423636 TRIM37O94972 964 aa13.79□□□□□ -0.2
PTPRN-204ENST00000423636 SYKP43405 635 aa13.79□□□□□ -0.2
PTPRN-204ENST00000423636 EIF6P56537 245 aaKnown RBP13.79□□□□□ -0.2
PTPRN-204ENST00000423636 ZNF174Q15697 407 aa13.79□□□□□ -0.2
PTPRN-204ENST00000423636 UVSSAQ2YD98 709 aa13.79□□□□□ -0.2
PTPRN-204ENST00000423636 USP17L1Q7RTZ2 530 aa13.79□□□□□ -0.2
PTPRN-204ENST00000423636 NBPF11Q86T75 865 aa13.79□□□□□ -0.2
PTPRN-204ENST00000423636 MAPKAPK5Q8IW41 473 aa13.79□□□□□ -0.2
PTPRN-204ENST00000423636 GPKOWQ92917 476 aaPredicted RBP eCLIP13.79□□□□□ -0.2
PTPRN-204ENST00000423636 RTEL1Q9NZ71 1219 aa13.79□□□□□ -0.2
PTPRN-204ENST00000423636 BAZ2AQ9UIF9 1905 aaKnown RBP13.79□□□□□ -0.2
PTPRN-204ENST00000423636 ZNF500O60304 480 aaPredicted RBP13.79□□□□□ -0.2
PTPRN-204ENST00000423636 IQCB1Q15051 598 aa13.79□□□□□ -0.2
PTPRN-204ENST00000423636 IFIT1BQ5T764 474 aaKnown RBP13.79□□□□□ -0.2
PTPRN-204ENST00000423636 KLHL10Q6JEL2 608 aa13.79□□□□□ -0.2
PTPRN-204ENST00000423636 DZIP1Q86YF9 867 aaKnown RBP13.79□□□□□ -0.2
PTPRN-204ENST00000423636 DHX40Q8IX18 779 aaKnown RBP13.79□□□□□ -0.2
PTPRN-204ENST00000423636 FANCBQ8NB91 859 aa13.79□□□□□ -0.2
PTPRN-204ENST00000423636 EEF2KMTQ96G04 330 aa13.79□□□□□ -0.2
PTPRN-204ENST00000423636 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.79□□□□□ -0.2
PTPRN-204ENST00000423636 VAT1LQ9HCJ6 419 aa13.79□□□□□ -0.2
PTPRN-204ENST00000423636 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.79□□□□□ -0.2
PTPRN-204ENST00000423636 AXDND1Q5T1B0 1012 aaPredicted RBP13.79□□□□□ -0.2
PTPRN-204ENST00000423636 ADALQ6DHV7 355 aa13.79□□□□□ -0.2
PTPRN-204ENST00000423636 CLEC10AQ8IUN9 316 aa13.79□□□□□ -0.2
PTPRN-204ENST00000423636 GNL3LQ9NVN8 582 aaKnown RBP13.79□□□□□ -0.2
PTPRN-204ENST00000423636 TOB1P50616 345 aaPredicted RBP13.78□□□□□ -0.2
PTPRN-204ENST00000423636 MSL1Q68DK7 614 aa13.78□□□□□ -0.2
PTPRN-204ENST00000423636 CTR9Q6PD62 1173 aa13.78□□□□□ -0.2
PTPRN-204ENST00000423636 SMYD4Q8IYR2 804 aaPredicted RBP13.78□□□□□ -0.2
PTPRN-204ENST00000423636 IFNKQ9P0W0 207 aa13.78□□□□□ -0.2
PTPRN-204ENST00000423636 PAPPAQ13219 1627 aa13.78□□□□□ -0.2
PTPRN-204ENST00000423636 POLR2DO15514 142 aaKnown RBP13.78□□□□□ -0.2
PTPRN-204ENST00000423636 PRR29P0C7W0 189 aa13.78□□□□□ -0.2
PTPRN-204ENST00000423636 TPTE2Q6XPS3 522 aa13.78□□□□□ -0.2
PTPRN-204ENST00000423636 TGFBRAP1Q8WUH2 860 aa13.78□□□□□ -0.2
PTPRN-204ENST00000423636 AK7Q96M32 723 aa13.78□□□□□ -0.2
PTPRN-204ENST00000423636 RIOK1Q9BRS2 568 aaKnown RBP13.78□□□□□ -0.2
PTPRN-204ENST00000423636 BSDC1Q9NW68 430 aaPredicted RBP13.78□□□□□ -0.2
PTPRN-204ENST00000423636 STX17P56962 302 aa13.77□□□□□ -0.2
PTPRN-204ENST00000423636 SART3Q15020 963 aaKnown RBP13.77□□□□□ -0.2
PTPRN-204ENST00000423636 STX1AQ16623 288 aa13.77□□□□□ -0.2
PTPRN-204ENST00000423636 FOXP4Q8IVH2 680 aaPredicted RBP13.77□□□□□ -0.2
PTPRN-204ENST00000423636 SMARCC1Q92922 1105 aaPredicted RBP13.77□□□□□ -0.2
PTPRN-204ENST00000423636 EPSTI1Q96J88 318 aa13.77□□□□□ -0.2
PTPRN-204ENST00000423636 STX8Q9UNK0 236 aa13.77□□□□□ -0.2
PTPRN-204ENST00000423636 NHSL1Q5SYE7 1610 aa13.77□□□□□ -0.2
PTPRN-204ENST00000423636 TSPY2A6NKD2 308 aa13.77□□□□□ -0.21
PTPRN-204ENST00000423636 AKAP17AQ02040 695 aaKnown RBP13.77□□□□□ -0.21
PTPRN-204ENST00000423636 HSP90AA2PQ14568 343 aaPredicted RBP13.77□□□□□ -0.21
PTPRN-204ENST00000423636 KIAA1468Q9P260 1216 aa13.77□□□□□ -0.21
PTPRN-204ENST00000423636 ZNF804BA4D1E1 1349 aa13.77□□□□□ -0.21
PTPRN-204ENST00000423636 USP5P45974 858 aa13.77□□□□□ -0.21
PTPRN-204ENST00000423636 TRIM22Q8IYM9 498 aa13.77□□□□□ -0.21
PTPRN-204ENST00000423636 FAM177A1Q8N128 213 aaPredicted RBP13.77□□□□□ -0.21
PTPRN-204ENST00000423636 SH3RF3Q8TEJ3 882 aaPredicted RBP13.77□□□□□ -0.21
PTPRN-204ENST00000423636 NSUN4Q96CB9 384 aaKnown RBP13.77□□□□□ -0.21
PTPRN-204ENST00000423636 MYH2Q9UKX2 1941 aa13.77□□□□□ -0.21
PTPRN-204ENST00000423636 TMC6Q7Z403 805 aa13.76□□□□□ -0.21
PTPRN-204ENST00000423636 DPF2Q92785 391 aa13.76□□□□□ -0.21
PTPRN-204ENST00000423636 TMEM87BQ96K49 555 aa13.76□□□□□ -0.21
PTPRN-204ENST00000423636 EVCP57679 992 aa13.76□□□□□ -0.21
PTPRN-204ENST00000423636 PICALMQ13492 652 aa13.76□□□□□ -0.21
PTPRN-204ENST00000423636 TRAPPC3LQ5T215 181 aa13.76□□□□□ -0.21
PTPRN-204ENST00000423636 CNNM3Q8NE01 707 aa13.76□□□□□ -0.21
PTPRN-204ENST00000423636 KRT23Q9C075 422 aa13.76□□□□□ -0.21
PTPRN-204ENST00000423636 XPO4Q9C0E2 1151 aaKnown RBP13.76□□□□□ -0.21
PTPRN-204ENST00000423636 MAPK8IP1Q9UQF2 711 aa13.76□□□□□ -0.21
PTPRN-204ENST00000423636 MYH3P11055 1940 aa13.76□□□□□ -0.21
PTPRN-204ENST00000423636 C6orf229H3BNL8 230 aa13.75□□□□□ -0.21
PTPRN-204ENST00000423636 HOMER1Q86YM7 354 aa13.75□□□□□ -0.21
PTPRN-204ENST00000423636 STAG2Q8N3U4 1231 aa13.75□□□□□ -0.21
PTPRN-204ENST00000423636 CRACR2BQ8N4Y2 399 aaPredicted RBP13.75□□□□□ -0.21
PTPRN-204ENST00000423636 DHX58Q96C10 678 aa13.75□□□□□ -0.21
PTPRN-204ENST00000423636 THRAP3Q9Y2W1 955 aaKnown RBP13.75□□□□□ -0.21
PTPRN-204ENST00000423636 PDE4BQ07343 736 aa13.75□□□□□ -0.21
PTPRN-204ENST00000423636 SLC39A14Q15043 492 aa13.75□□□□□ -0.21
PTPRN-204ENST00000423636 CEP57L1Q8IYX8 460 aa13.75□□□□□ -0.21
PTPRN-204ENST00000423636 KCNG4Q8TDN1 519 aa13.75□□□□□ -0.21
PTPRN-204ENST00000423636 ESR2Q92731 530 aa13.75□□□□□ -0.21
PTPRN-204ENST00000423636 ZSCAN10Q96SZ4 725 aaPredicted RBP13.75□□□□□ -0.21
PTPRN-204ENST00000423636 CDCA7Q9BWT1 371 aaPredicted RBP13.75□□□□□ -0.21
PTPRN-204ENST00000423636 NARFQ9UHQ1 456 aa13.75□□□□□ -0.21
PTPRN-204ENST00000423636 SERTAD1Q9UHV2 236 aa13.75□□□□□ -0.21
PTPRN-204ENST00000423636 PLCD1P51178 756 aa13.75□□□□□ -0.21
PTPRN-204ENST00000423636 HS1BP3Q53T59 392 aa13.75□□□□□ -0.21
PTPRN-204ENST00000423636 NOSTRINQ8IVI9 506 aa13.75□□□□□ -0.21
PTPRN-204ENST00000423636 SEPT12Q8IYM1 358 aa13.75□□□□□ -0.21
PTPRN-204ENST00000423636 DCP1AQ9NPI6 582 aaPredicted RBP13.75□□□□□ -0.21
PTPRN-204ENST00000423636 SAFBQ15424 915 aaKnown RBP eCLIP13.74□□□□□ -0.21
PTPRN-204ENST00000423636 TPD52L1Q16890 204 aaPredicted RBP13.74□□□□□ -0.21
PTPRN-204ENST00000423636 GPIHBP1Q8IV16 184 aa13.74□□□□□ -0.21
PTPRN-204ENST00000423636 CNBD1Q8NA66 436 aa13.74□□□□□ -0.21
PTPRN-204ENST00000423636 KIAA1524Q8TCG1 905 aa13.74□□□□□ -0.21
PTPRN-204ENST00000423636 ZNF512BQ96KM6 892 aaPredicted RBP13.74□□□□□ -0.21
PTPRN-204ENST00000423636 ANO10Q9NW15 660 aa13.74□□□□□ -0.21
PTPRN-204ENST00000423636 PCDHA5Q9Y5H7 936 aa13.74□□□□□ -0.21
PTPRN-204ENST00000423636 ABCC6O95255 1503 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms