RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.02■□□□□ -0
SKA1-203ENST00000417656 ANKRD13AQ8IZ07 590 aa15.02■□□□□ -0
SKA1-203ENST00000417656 SEC62Q99442 399 aaKnown RBP15.02■□□□□ -0
SKA1-203ENST00000417656 PALD1Q9ULE6 856 aa15.02■□□□□ -0
SKA1-203ENST00000417656 GPAA1O43292 621 aa15.01□□□□□ -0.01
SKA1-203ENST00000417656 INPP5BP32019 993 aa15.01□□□□□ -0.01
SKA1-203ENST00000417656 MKRN3Q13064 507 aaKnown RBP15.01□□□□□ -0.01
SKA1-203ENST00000417656 DHX36Q9H2U1 1008 aaKnown RBP15.01□□□□□ -0.01
SKA1-203ENST00000417656 ELP3Q9H9T3 547 aa15.01□□□□□ -0.01
SKA1-203ENST00000417656 DCP1AQ9NPI6 582 aaPredicted RBP15.01□□□□□ -0.01
SKA1-203ENST00000417656 CSADQ9Y600 493 aa15.01□□□□□ -0.01
SKA1-203ENST00000417656 SLC4A4Q9Y6R1 1079 aa15.01□□□□□ -0.01
SKA1-203ENST00000417656 A0A0D9SFI3 127 aa15□□□□□ -0.01
SKA1-203ENST00000417656 HLA-DOAP06340 250 aa15□□□□□ -0.01
SKA1-203ENST00000417656 MAP3K9P80192 1104 aa15□□□□□ -0.01
SKA1-203ENST00000417656 ERICH6BQ5W0A0 696 aa15□□□□□ -0.01
SKA1-203ENST00000417656 CCDC129Q6ZRS4 1044 aa15□□□□□ -0.01
SKA1-203ENST00000417656 ZKSCAN4Q969J2 545 aaPredicted RBP15□□□□□ -0.01
SKA1-203ENST00000417656 CCDC102AQ96A19 550 aa15□□□□□ -0.01
SKA1-203ENST00000417656 STRBPQ96SI9 672 aaKnown RBP15□□□□□ -0.01
SKA1-203ENST00000417656 ZIC5Q96T25 663 aa15□□□□□ -0.01
SKA1-203ENST00000417656 DNAJC18Q9H819 358 aa15□□□□□ -0.01
SKA1-203ENST00000417656 PPP4R2Q9NY27 417 aa15□□□□□ -0.01
SKA1-203ENST00000417656 SNCAIPQ9Y6H5 919 aa15□□□□□ -0.01
SKA1-203ENST00000417656 ATXN8OSP0DMR3 200 aa14.99□□□□□ -0.01
SKA1-203ENST00000417656 CYP2D6P10635 497 aa14.99□□□□□ -0.01
SKA1-203ENST00000417656 EVX2Q03828 476 aa14.99□□□□□ -0.01
SKA1-203ENST00000417656 NOGQ13253 232 aa14.99□□□□□ -0.01
SKA1-203ENST00000417656 NMIQ13287 307 aaPredicted RBP14.99□□□□□ -0.01
SKA1-203ENST00000417656 CRACR2BQ8N4Y2 399 aaPredicted RBP14.99□□□□□ -0.01
SKA1-203ENST00000417656 JMYQ8N9B5 988 aa14.99□□□□□ -0.01
SKA1-203ENST00000417656 WNK4Q96J92 1243 aa14.99□□□□□ -0.01
SKA1-203ENST00000417656 FAM227BQ96M60 508 aa14.99□□□□□ -0.01
SKA1-203ENST00000417656 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.99□□□□□ -0.01
SKA1-203ENST00000417656 MCM9Q9NXL9 1143 aa14.99□□□□□ -0.01
SKA1-203ENST00000417656 PI4KBQ9UBF8 816 aa14.99□□□□□ -0.01
SKA1-203ENST00000417656 ZNF112Q9UJU3 913 aa14.99□□□□□ -0.01
SKA1-203ENST00000417656 MYH8P13535 1937 aa14.99□□□□□ -0.01
SKA1-203ENST00000417656 UNCXA6NJT0 531 aa14.98□□□□□ -0.01
SKA1-203ENST00000417656 PHF20L1A8MW92 1017 aa14.98□□□□□ -0.01
SKA1-203ENST00000417656 TBC1D12O60347 775 aa14.98□□□□□ -0.01
SKA1-203ENST00000417656 POLR3DP05423 398 aaPredicted RBP14.98□□□□□ -0.01
SKA1-203ENST00000417656 SDSP20132 328 aa14.98□□□□□ -0.01
SKA1-203ENST00000417656 GJA5P36382 358 aa14.98□□□□□ -0.01
SKA1-203ENST00000417656 MAP3K10Q02779 954 aa14.98□□□□□ -0.01
SKA1-203ENST00000417656 SLC10A4Q96EP9 437 aa14.98□□□□□ -0.01
SKA1-203ENST00000417656 TRIM34Q9BYJ4 488 aa14.98□□□□□ -0.01
SKA1-203ENST00000417656 ATP8A2Q9NTI2 1148 aa14.98□□□□□ -0.01
SKA1-203ENST00000417656 HERC5Q9UII4 1024 aaKnown RBP14.98□□□□□ -0.01
SKA1-203ENST00000417656 PHIPQ8WWQ0 1821 aa14.98□□□□□ -0.01
SKA1-203ENST00000417656 CYP2D7A0A087X1C5 515 aa14.97□□□□□ -0.01
SKA1-203ENST00000417656 SPDYE5A6NIY4 337 aa14.97□□□□□ -0.01
SKA1-203ENST00000417656 PLCD1P51178 756 aa14.97□□□□□ -0.01
SKA1-203ENST00000417656 KIF23Q02241 960 aaPredicted RBP14.97□□□□□ -0.01
SKA1-203ENST00000417656 NOL9Q5SY16 702 aaKnown RBP14.97□□□□□ -0.01
SKA1-203ENST00000417656 SPRYD7Q5W111 196 aa14.97□□□□□ -0.01
SKA1-203ENST00000417656 SCYL3Q8IZE3 742 aa14.97□□□□□ -0.01
SKA1-203ENST00000417656 OPTNQ96CV9 577 aa14.97□□□□□ -0.01
SKA1-203ENST00000417656 OTUD5Q96G74 571 aa14.97□□□□□ -0.01
SKA1-203ENST00000417656 DDRGK1Q96HY6 314 aa14.97□□□□□ -0.01
SKA1-203ENST00000417656 EHD4Q9H223 541 aa14.97□□□□□ -0.01
SKA1-203ENST00000417656 EPB41L4AQ9HCS5 686 aaPredicted RBP14.97□□□□□ -0.01
SKA1-203ENST00000417656 DIAPH3Q9NSV4 1193 aa14.97□□□□□ -0.01
SKA1-203ENST00000417656 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.97□□□□□ -0.01
SKA1-203ENST00000417656 GSG1L2A8MUP6 293 aa14.96□□□□□ -0.01
SKA1-203ENST00000417656 GNAT2P19087 354 aa14.96□□□□□ -0.01
SKA1-203ENST00000417656 MAP2K2P36507 400 aa14.96□□□□□ -0.01
SKA1-203ENST00000417656 RRP1BQ14684 758 aaKnown RBP14.96□□□□□ -0.01
SKA1-203ENST00000417656 TTC6Q86TZ1 520 aa14.96□□□□□ -0.01
SKA1-203ENST00000417656 METTL16Q86W50 562 aaKnown RBP14.96□□□□□ -0.01
SKA1-203ENST00000417656 TICAM2Q86XR7 235 aa14.96□□□□□ -0.01
SKA1-203ENST00000417656 HELLSQ9NRZ9 838 aa14.96□□□□□ -0.01
SKA1-203ENST00000417656 SERPINB13Q9UIV8 391 aa14.96□□□□□ -0.01
SKA1-203ENST00000417656 SMIM22K7EJ46 135 aa14.95□□□□□ -0.02
SKA1-203ENST00000417656 FOXP2O15409 715 aa14.95□□□□□ -0.02
SKA1-203ENST00000417656 ZBTB48P10074 688 aaPredicted RBP14.95□□□□□ -0.02
SKA1-203ENST00000417656 TDO2P48775 406 aa14.95□□□□□ -0.02
SKA1-203ENST00000417656 ZNF589Q86UQ0 364 aaPredicted RBP14.95□□□□□ -0.02
SKA1-203ENST00000417656 CCDC84Q86UT8 332 aaPredicted RBP14.95□□□□□ -0.02
SKA1-203ENST00000417656 ERO1BQ86YB8 467 aa14.95□□□□□ -0.02
SKA1-203ENST00000417656 FOXP4Q8IVH2 680 aaPredicted RBP14.95□□□□□ -0.02
SKA1-203ENST00000417656 PIP4P2Q8N4L2 257 aa14.95□□□□□ -0.02
SKA1-203ENST00000417656 ARPP21Q9UBL0 812 aaPredicted RBP14.95□□□□□ -0.02
SKA1-203ENST00000417656 CCDC171Q6TFL3 1326 aa14.94□□□□□ -0.02
SKA1-203ENST00000417656 PTPRFP10586 1907 aa14.94□□□□□ -0.02
SKA1-203ENST00000417656 USP17L12C9JPN9 530 aa14.94□□□□□ -0.02
SKA1-203ENST00000417656 USP17L21D6R901 530 aa14.94□□□□□ -0.02
SKA1-203ENST00000417656 HIP1O00291 1037 aa14.94□□□□□ -0.02
SKA1-203ENST00000417656 GDF11O95390 407 aa14.94□□□□□ -0.02
SKA1-203ENST00000417656 APPP05067 770 aa14.94□□□□□ -0.02
SKA1-203ENST00000417656 SHROOM1Q2M3G4 852 aaPredicted RBP14.94□□□□□ -0.02
SKA1-203ENST00000417656 MCMDC2Q4G0Z9 681 aa14.94□□□□□ -0.02
SKA1-203ENST00000417656 C12orf60Q5U649 245 aa14.94□□□□□ -0.02
SKA1-203ENST00000417656 VPS53Q5VIR6 699 aa14.94□□□□□ -0.02
SKA1-203ENST00000417656 CTR9Q6PD62 1173 aa14.94□□□□□ -0.02
SKA1-203ENST00000417656 CWC27Q6UX04 472 aaKnown RBP14.94□□□□□ -0.02
SKA1-203ENST00000417656 AMOTL1Q8IY63 956 aa14.94□□□□□ -0.02
SKA1-203ENST00000417656 SLC44A5Q8NCS7 719 aa14.94□□□□□ -0.02
SKA1-203ENST00000417656 DYNLL2Q96FJ2 89 aa14.94□□□□□ -0.02
SKA1-203ENST00000417656 PICK1Q9NRD5 415 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms