RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 WDR19Q8NEZ3 1342 aa17.35■□□□□ 0.37
USP4-203ENST00000415188 E7EWF7 191 aa17.35■□□□□ 0.37
USP4-203ENST00000415188 TTF1Q15361 905 aaPredicted RBP17.35■□□□□ 0.37
USP4-203ENST00000415188 METTL24Q5JXM2 366 aa17.35■□□□□ 0.37
USP4-203ENST00000415188 STRIP1Q5VSL9 837 aa17.35■□□□□ 0.37
USP4-203ENST00000415188 ATL3Q6DD88 541 aa17.35■□□□□ 0.37
USP4-203ENST00000415188 BRF1Q92994 677 aa17.35■□□□□ 0.37
USP4-203ENST00000415188 CDCA5Q96FF9 252 aa17.35■□□□□ 0.37
USP4-203ENST00000415188 ZIC5Q96T25 663 aa17.35■□□□□ 0.37
USP4-203ENST00000415188 TSKSQ9UJT2 592 aa17.35■□□□□ 0.37
USP4-203ENST00000415188 IRS2Q9Y4H2 1338 aa17.34■□□□□ 0.37
USP4-203ENST00000415188 M0R2C6 588 aa17.34■□□□□ 0.37
USP4-203ENST00000415188 ADORA1P30542 326 aa17.34■□□□□ 0.37
USP4-203ENST00000415188 EVCP57679 992 aa17.34■□□□□ 0.37
USP4-203ENST00000415188 RESTQ13127 1097 aa17.34■□□□□ 0.37
USP4-203ENST00000415188 STK3Q13188 491 aa17.34■□□□□ 0.37
USP4-203ENST00000415188 NBPF9Q3BBW0 867 aa17.34■□□□□ 0.37
USP4-203ENST00000415188 TTLL5Q6EMB2 1281 aa17.34■□□□□ 0.37
USP4-203ENST00000415188 TTC6Q86TZ1 520 aa17.34■□□□□ 0.37
USP4-203ENST00000415188 FUCA2Q9BTY2 467 aa17.34■□□□□ 0.37
USP4-203ENST00000415188 BEGAINQ9BUH8 593 aa17.34■□□□□ 0.37
USP4-203ENST00000415188 CHGBP05060 677 aa17.33■□□□□ 0.37
USP4-203ENST00000415188 GTF2IP78347 998 aa17.33■□□□□ 0.37
USP4-203ENST00000415188 SCRN1Q12765 414 aa17.33■□□□□ 0.37
USP4-203ENST00000415188 IMMTQ16891 758 aaKnown RBP17.33■□□□□ 0.37
USP4-203ENST00000415188 LDHAL6AQ6ZMR3 332 aa17.33■□□□□ 0.37
USP4-203ENST00000415188 C2orf69Q8N8R5 385 aa17.33■□□□□ 0.37
USP4-203ENST00000415188 RGS22Q8NE09 1264 aa17.33■□□□□ 0.37
USP4-203ENST00000415188 OSBP2Q969R2 916 aa17.33■□□□□ 0.37
USP4-203ENST00000415188 CD209Q9NNX6 404 aa17.33■□□□□ 0.37
USP4-203ENST00000415188 H3BQV1 296 aa17.32■□□□□ 0.36
USP4-203ENST00000415188 UQCRFS1P1P0C7P4 283 aa17.32■□□□□ 0.36
USP4-203ENST00000415188 RGMBQ6NW40 437 aa17.32■□□□□ 0.36
USP4-203ENST00000415188 RNF214Q8ND24 703 aa17.32■□□□□ 0.36
USP4-203ENST00000415188 NSUN7Q8NE18 718 aaKnown RBP17.32■□□□□ 0.36
USP4-203ENST00000415188 SPATA32Q96LK8 384 aa17.32■□□□□ 0.36
USP4-203ENST00000415188 DDX19AQ9NUU7 478 aaKnown RBP17.32■□□□□ 0.36
USP4-203ENST00000415188 CFAP45Q9UL16 551 aa17.32■□□□□ 0.36
USP4-203ENST00000415188 MYO3BQ8WXR4 1341 aa17.32■□□□□ 0.36
USP4-203ENST00000415188 A0A1B0GUL6 1792 aa17.32■□□□□ 0.36
USP4-203ENST00000415188 KIAA0825Q8IV33 1275 aa17.31■□□□□ 0.36
USP4-203ENST00000415188 OGFOD1Q8N543 542 aa17.31■□□□□ 0.36
USP4-203ENST00000415188 VGLL2Q8N8G2 317 aa17.31■□□□□ 0.36
USP4-203ENST00000415188 LEO1Q8WVC0 666 aaPredicted RBP17.31■□□□□ 0.36
USP4-203ENST00000415188 CNNM1Q9NRU3 951 aa17.31■□□□□ 0.36
USP4-203ENST00000415188 MROH5Q6ZUA9 1318 aa17.31■□□□□ 0.36
USP4-203ENST00000415188 PITPNM2Q9BZ72 1349 aa17.31■□□□□ 0.36
USP4-203ENST00000415188 GOLGA6L4A6NEF3 574 aa17.31■□□□□ 0.36
USP4-203ENST00000415188 FAM155AB1AL88 458 aaPredicted RBP17.31■□□□□ 0.36
USP4-203ENST00000415188 WNT10BO00744 389 aa17.31■□□□□ 0.36
USP4-203ENST00000415188 ZNF500O60304 480 aaPredicted RBP17.31■□□□□ 0.36
USP4-203ENST00000415188 JAK2O60674 1132 aa17.31■□□□□ 0.36
USP4-203ENST00000415188 CCDC192P0DO97 292 aa17.31■□□□□ 0.36
USP4-203ENST00000415188 ZAP70P43403 619 aa17.31■□□□□ 0.36
USP4-203ENST00000415188 NOGQ13253 232 aa17.31■□□□□ 0.36
USP4-203ENST00000415188 PRAMEF18Q5VWM3 479 aa17.31■□□□□ 0.36
USP4-203ENST00000415188 C15orf52Q6ZUT6 534 aaKnown RBP17.31■□□□□ 0.36
USP4-203ENST00000415188 FERMT3Q86UX7 667 aa17.31■□□□□ 0.36
USP4-203ENST00000415188 ZKSCAN5Q9Y2L8 839 aa17.31■□□□□ 0.36
USP4-203ENST00000415188 SALL1Q9NSC2 1324 aa17.3■□□□□ 0.36
USP4-203ENST00000415188 MAP3K11Q16584 847 aa17.3■□□□□ 0.36
USP4-203ENST00000415188 CERS5Q8N5B7 392 aa17.3■□□□□ 0.36
USP4-203ENST00000415188 NUP62CLQ9H1M0 184 aa17.3■□□□□ 0.36
USP4-203ENST00000415188 DOCK2Q92608 1830 aa17.3■□□□□ 0.36
USP4-203ENST00000415188 PTPDC1A2A3K4 754 aa17.29■□□□□ 0.36
USP4-203ENST00000415188 PDE8BO95263 885 aa17.29■□□□□ 0.36
USP4-203ENST00000415188 ARID4AP29374 1257 aaPredicted RBP17.29■□□□□ 0.36
USP4-203ENST00000415188 ZNF157P51786 506 aaPredicted RBP17.29■□□□□ 0.36
USP4-203ENST00000415188 APOBRQ0VD83 1088 aa17.29■□□□□ 0.36
USP4-203ENST00000415188 UBE3CQ15386 1083 aa17.29■□□□□ 0.36
USP4-203ENST00000415188 MOB2Q70IA6 237 aa17.29■□□□□ 0.36
USP4-203ENST00000415188 JAG2Q9Y219 1238 aa17.29■□□□□ 0.36
USP4-203ENST00000415188 DHX16O60231 1041 aaKnown RBP17.28■□□□□ 0.36
USP4-203ENST00000415188 PDIA3P30101 505 aaKnown RBP17.28■□□□□ 0.36
USP4-203ENST00000415188 ADD2P35612 726 aa17.28■□□□□ 0.36
USP4-203ENST00000415188 PUM3Q15397 648 aaKnown RBP17.28■□□□□ 0.36
USP4-203ENST00000415188 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.28■□□□□ 0.36
USP4-203ENST00000415188 RBM43Q6ZSC3 357 aaKnown RBP17.28■□□□□ 0.36
USP4-203ENST00000415188 ZNF804AQ7Z570 1209 aa17.28■□□□□ 0.36
USP4-203ENST00000415188 LPIN2Q92539 896 aa17.28■□□□□ 0.36
USP4-203ENST00000415188 ZNF396Q96N95 335 aaPredicted RBP17.28■□□□□ 0.36
USP4-203ENST00000415188 ZMYM6O95789 1325 aa17.28■□□□□ 0.36
USP4-203ENST00000415188 GPAA1O43292 621 aa17.27■□□□□ 0.36
USP4-203ENST00000415188 CTDNEP1O95476 244 aa17.27■□□□□ 0.36
USP4-203ENST00000415188 IL1R1P14778 569 aa17.27■□□□□ 0.36
USP4-203ENST00000415188 MCAMP43121 646 aa17.27■□□□□ 0.36
USP4-203ENST00000415188 SLFNL1Q499Z3 407 aa17.27■□□□□ 0.36
USP4-203ENST00000415188 MB21D2Q8IYB1 491 aaPredicted RBP17.27■□□□□ 0.36
USP4-203ENST00000415188 NCOA7Q8NI08 942 aa17.27■□□□□ 0.36
USP4-203ENST00000415188 LRRC2Q9BYS8 371 aa17.27■□□□□ 0.36
USP4-203ENST00000415188 CLSTN2Q9H4D0 955 aa17.27■□□□□ 0.36
USP4-203ENST00000415188 HDAC9Q9UKV0 1011 aa17.27■□□□□ 0.36
USP4-203ENST00000415188 FOXP2O15409 715 aa17.26■□□□□ 0.35
USP4-203ENST00000415188 FGAP02671 866 aa17.26■□□□□ 0.35
USP4-203ENST00000415188 SLC10A3P09131 477 aa17.26■□□□□ 0.35
USP4-203ENST00000415188 FGFR2P21802 821 aa17.26■□□□□ 0.35
USP4-203ENST00000415188 KIF23Q02241 960 aaPredicted RBP17.26■□□□□ 0.35
USP4-203ENST00000415188 GIMAP6Q6P9H5 292 aa17.26■□□□□ 0.35
USP4-203ENST00000415188 CCDC102AQ96A19 550 aa17.26■□□□□ 0.35
USP4-203ENST00000415188 ZBED3Q96IU2 234 aaPredicted RBP17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 148.9 ms