RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 RALYLQ86SE5 291 aaKnown RBP11.46□□□□□ -0.58
RIF1-202ENST00000414861 VEZTQ9HBM0 779 aa11.46□□□□□ -0.58
RIF1-202ENST00000414861 TOMM22Q9NS69 142 aa11.46□□□□□ -0.58
RIF1-202ENST00000414861 KDM4AO75164 1064 aa11.45□□□□□ -0.58
RIF1-202ENST00000414861 FGRP09769 529 aa11.45□□□□□ -0.58
RIF1-202ENST00000414861 TOB2Q14106 344 aaPredicted RBP11.45□□□□□ -0.58
RIF1-202ENST00000414861 HSCBQ8IWL3 235 aa11.45□□□□□ -0.58
RIF1-202ENST00000414861 CDAN1Q8IWY9 1227 aa11.45□□□□□ -0.58
RIF1-202ENST00000414861 IPO9Q96P70 1041 aaKnown RBP11.45□□□□□ -0.58
RIF1-202ENST00000414861 GPHNQ9NQX3 736 aaPredicted RBP11.45□□□□□ -0.58
RIF1-202ENST00000414861 NPM3O75607 178 aaKnown RBP11.45□□□□□ -0.58
RIF1-202ENST00000414861 HMGB1P09429 215 aaKnown RBP11.45□□□□□ -0.58
RIF1-202ENST00000414861 MMP14P50281 582 aa11.45□□□□□ -0.58
RIF1-202ENST00000414861 TRDNQ13061 729 aa11.45□□□□□ -0.58
RIF1-202ENST00000414861 RNF41Q9H4P4 317 aaPredicted RBP11.45□□□□□ -0.58
RIF1-202ENST00000414861 TMOD2Q9NZR1 351 aa11.45□□□□□ -0.58
RIF1-202ENST00000414861 ATRNL1Q5VV63 1379 aa11.44□□□□□ -0.58
RIF1-202ENST00000414861 H7C1D1 291 aa11.44□□□□□ -0.58
RIF1-202ENST00000414861 PRC1O43663 620 aa11.44□□□□□ -0.58
RIF1-202ENST00000414861 HIRAP54198 1017 aaPredicted RBP11.44□□□□□ -0.58
RIF1-202ENST00000414861 AMOTL1Q8IY63 956 aa11.44□□□□□ -0.58
RIF1-202ENST00000414861 CNNM2Q9H8M5 875 aa11.44□□□□□ -0.58
RIF1-202ENST00000414861 COL2A1P02458 1487 aaPredicted RBP11.44□□□□□ -0.58
RIF1-202ENST00000414861 ZC3H4Q9UPT8 1303 aaKnown RBP11.44□□□□□ -0.58
RIF1-202ENST00000414861 K7ELQ4 463 aaPredicted RBP11.44□□□□□ -0.58
RIF1-202ENST00000414861 MYO1BO43795 1136 aa11.44□□□□□ -0.58
RIF1-202ENST00000414861 ORC4O43929 436 aa11.44□□□□□ -0.58
RIF1-202ENST00000414861 ENTPD3O75355 529 aa11.44□□□□□ -0.58
RIF1-202ENST00000414861 MCM5P33992 734 aa11.44□□□□□ -0.58
RIF1-202ENST00000414861 GABPAQ06546 454 aa11.44□□□□□ -0.58
RIF1-202ENST00000414861 Q6ZUG5 572 aa11.44□□□□□ -0.58
RIF1-202ENST00000414861 C16orf86Q6ZW13 317 aa11.44□□□□□ -0.58
RIF1-202ENST00000414861 KRT23Q9C075 422 aa11.44□□□□□ -0.58
RIF1-202ENST00000414861 DNAJC18Q9H819 358 aa11.44□□□□□ -0.58
RIF1-202ENST00000414861 ZSWIM5Q9P217 1185 aa11.44□□□□□ -0.58
RIF1-202ENST00000414861 FAM196BA6NMK8 535 aa11.43□□□□□ -0.58
RIF1-202ENST00000414861 LARGE1O95461 756 aa11.43□□□□□ -0.58
RIF1-202ENST00000414861 ZSCAN29Q8IWY8 852 aaPredicted RBP11.43□□□□□ -0.58
RIF1-202ENST00000414861 L3MBTL3Q96JM7 780 aaPredicted RBP11.43□□□□□ -0.58
RIF1-202ENST00000414861 TMEM39BQ9GZU3 492 aa11.43□□□□□ -0.58
RIF1-202ENST00000414861 HACL1Q9UJ83 578 aa11.43□□□□□ -0.58
RIF1-202ENST00000414861 RANBP6O60518 1105 aaKnown RBP11.43□□□□□ -0.58
RIF1-202ENST00000414861 SLC3A2P08195 630 aaKnown RBP11.43□□□□□ -0.58
RIF1-202ENST00000414861 PCP11498 1178 aaKnown RBP11.43□□□□□ -0.58
RIF1-202ENST00000414861 CDK8P49336 464 aa11.43□□□□□ -0.58
RIF1-202ENST00000414861 PDE4BQ07343 736 aa11.43□□□□□ -0.58
RIF1-202ENST00000414861 BECN1Q14457 450 aa11.43□□□□□ -0.58
RIF1-202ENST00000414861 FKBP1CQ5VVH2 108 aa11.43□□□□□ -0.58
RIF1-202ENST00000414861 TTC6Q86TZ1 520 aa11.43□□□□□ -0.58
RIF1-202ENST00000414861 BRF1Q92994 677 aa11.43□□□□□ -0.58
RIF1-202ENST00000414861 ZKSCAN3Q9BRR0 538 aa11.43□□□□□ -0.58
RIF1-202ENST00000414861 AGXT2Q9BYV1 514 aa11.43□□□□□ -0.58
RIF1-202ENST00000414861 SENP2Q9HC62 589 aa11.43□□□□□ -0.58
RIF1-202ENST00000414861 SERPINB13Q9UIV8 391 aa11.43□□□□□ -0.58
RIF1-202ENST00000414861 SCN4AP35499 1836 aa11.42□□□□□ -0.58
RIF1-202ENST00000414861 GLTPD2A6NH11 291 aa11.42□□□□□ -0.58
RIF1-202ENST00000414861 RASA1P20936 1047 aa11.42□□□□□ -0.58
RIF1-202ENST00000414861 LMOD1P29536 600 aaPredicted RBP11.42□□□□□ -0.58
RIF1-202ENST00000414861 FAM47AQ5JRC9 791 aa11.42□□□□□ -0.58
RIF1-202ENST00000414861 DPY19L2Q6NUT2 758 aa11.42□□□□□ -0.58
RIF1-202ENST00000414861 ESR2Q92731 530 aa11.42□□□□□ -0.58
RIF1-202ENST00000414861 TMX3Q96JJ7 454 aa11.42□□□□□ -0.58
RIF1-202ENST00000414861 DHX36Q9H2U1 1008 aaKnown RBP11.42□□□□□ -0.58
RIF1-202ENST00000414861 TPCN1Q9ULQ1 816 aa11.42□□□□□ -0.58
RIF1-202ENST00000414861 WDR19Q8NEZ3 1342 aa11.42□□□□□ -0.58
RIF1-202ENST00000414861 GREB1LQ9C091 1923 aaPredicted RBP11.42□□□□□ -0.58
RIF1-202ENST00000414861 NMT2O60551 498 aa11.42□□□□□ -0.58
RIF1-202ENST00000414861 HLA-DOAP06340 250 aa11.42□□□□□ -0.58
RIF1-202ENST00000414861 FAM151AQ8WW52 585 aa11.42□□□□□ -0.58
RIF1-202ENST00000414861 WDR90Q96KV7 1748 aa11.42□□□□□ -0.58
RIF1-202ENST00000414861 CSRNP1Q96S65 589 aa11.42□□□□□ -0.58
RIF1-202ENST00000414861 EHD4Q9H223 541 aa11.42□□□□□ -0.58
RIF1-202ENST00000414861 ALDH8A1Q9H2A2 487 aaPredicted RBP11.42□□□□□ -0.58
RIF1-202ENST00000414861 GGA3Q9NZ52 723 aa11.42□□□□□ -0.58
RIF1-202ENST00000414861 PGAP2Q9UHJ9 254 aa11.42□□□□□ -0.58
RIF1-202ENST00000414861 SH2B2O14492 632 aaPredicted RBP11.41□□□□□ -0.58
RIF1-202ENST00000414861 SHMT1P34896 483 aa11.41□□□□□ -0.58
RIF1-202ENST00000414861 APOBRQ0VD83 1088 aa11.41□□□□□ -0.58
RIF1-202ENST00000414861 ANGEL2Q5VTE6 544 aaKnown RBP11.41□□□□□ -0.58
RIF1-202ENST00000414861 FAM83AQ86UY5 434 aa11.41□□□□□ -0.58
RIF1-202ENST00000414861 IGDCC4Q8TDY8 1250 aa11.41□□□□□ -0.58
RIF1-202ENST00000414861 MKNK2Q9HBH9 465 aa11.41□□□□□ -0.58
RIF1-202ENST00000414861 ADARB2Q9NS39 739 aaKnown RBP11.41□□□□□ -0.58
RIF1-202ENST00000414861 PI4KBQ9UBF8 816 aa11.41□□□□□ -0.58
RIF1-202ENST00000414861 MCM2P49736 904 aa11.41□□□□□ -0.58
RIF1-202ENST00000414861 FGD1P98174 961 aa11.41□□□□□ -0.58
RIF1-202ENST00000414861 ST3GAL1Q11201 340 aa11.41□□□□□ -0.58
RIF1-202ENST00000414861 RASA3Q14644 834 aa11.41□□□□□ -0.58
RIF1-202ENST00000414861 ME3Q16798 604 aa11.41□□□□□ -0.58
RIF1-202ENST00000414861 FBXL16Q8N461 479 aa11.41□□□□□ -0.58
RIF1-202ENST00000414861 SPRYD3Q8NCJ5 442 aa11.41□□□□□ -0.58
RIF1-202ENST00000414861 LY9Q9HBG7 655 aa11.41□□□□□ -0.58
RIF1-202ENST00000414861 LIMCH1Q9UPQ0 1083 aa11.41□□□□□ -0.58
RIF1-202ENST00000414861 TSPY2A6NKD2 308 aa11.4□□□□□ -0.58
RIF1-202ENST00000414861 SHROOM1Q2M3G4 852 aaPredicted RBP11.4□□□□□ -0.58
RIF1-202ENST00000414861 TEPSINQ96N21 525 aa11.4□□□□□ -0.58
RIF1-202ENST00000414861 ANGEL1Q9UNK9 670 aaKnown RBP11.4□□□□□ -0.58
RIF1-202ENST00000414861 TNKSO95271 1327 aa11.4□□□□□ -0.58
RIF1-202ENST00000414861 POTECB2RU33 542 aa11.4□□□□□ -0.59
RIF1-202ENST00000414861 IFIT3O14879 490 aaKnown RBP11.4□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms