RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 CCNL1Q9UK58 526 aaPredicted RBP10.91□□□□□ -0.66
SNHG3-201ENST00000413987 N4BP2Q86UW6 1770 aaPredicted RBP10.91□□□□□ -0.66
SNHG3-201ENST00000413987 UTRNP46939 3433 aa10.91□□□□□ -0.66
SNHG3-201ENST00000413987 UBTFL1P0CB47 393 aaPredicted RBP10.9□□□□□ -0.66
SNHG3-201ENST00000413987 ATICP31939 592 aa10.9□□□□□ -0.66
SNHG3-201ENST00000413987 SSR1P43307 286 aaKnown RBP10.9□□□□□ -0.66
SNHG3-201ENST00000413987 PSMC1P62191 440 aaKnown RBP10.9□□□□□ -0.66
SNHG3-201ENST00000413987 PTGDRQ13258 359 aa10.9□□□□□ -0.66
SNHG3-201ENST00000413987 SUGP1Q8IWZ8 645 aaKnown RBP10.9□□□□□ -0.66
SNHG3-201ENST00000413987 PLBD2Q8NHP8 589 aa10.9□□□□□ -0.66
SNHG3-201ENST00000413987 SMARCC1Q92922 1105 aaPredicted RBP10.9□□□□□ -0.66
SNHG3-201ENST00000413987 ZNF830Q96NB3 372 aaPredicted RBP10.9□□□□□ -0.66
SNHG3-201ENST00000413987 TEX13AQ9BXU3 409 aaPredicted RBP10.9□□□□□ -0.66
SNHG3-201ENST00000413987 TSPY26PQ9H489 355 aa10.9□□□□□ -0.66
SNHG3-201ENST00000413987 CCDC87Q9NVE4 849 aa10.9□□□□□ -0.66
SNHG3-201ENST00000413987 C9orf78Q9NZ63 289 aaPredicted RBP10.9□□□□□ -0.66
SNHG3-201ENST00000413987 NUP188Q5SRE5 1749 aa10.9□□□□□ -0.66
SNHG3-201ENST00000413987 SYCE3A1L190 88 aa10.9□□□□□ -0.66
SNHG3-201ENST00000413987 HMMRO75330 724 aa10.9□□□□□ -0.66
SNHG3-201ENST00000413987 RBP3P10745 1247 aa10.9□□□□□ -0.66
SNHG3-201ENST00000413987 FAM196AQ6ZSG2 479 aa10.9□□□□□ -0.66
SNHG3-201ENST00000413987 LINS1Q8NG48 757 aa10.9□□□□□ -0.66
SNHG3-201ENST00000413987 SLC45A1Q9Y2W3 748 aa10.9□□□□□ -0.66
SNHG3-201ENST00000413987 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.9□□□□□ -0.66
SNHG3-201ENST00000413987 GNAI2P04899 355 aa10.89□□□□□ -0.67
SNHG3-201ENST00000413987 P4HBP07237 508 aaKnown RBP10.89□□□□□ -0.67
SNHG3-201ENST00000413987 CBX1P83916 185 aa10.89□□□□□ -0.67
SNHG3-201ENST00000413987 ZNF211Q13398 564 aaPredicted RBP10.89□□□□□ -0.67
SNHG3-201ENST00000413987 NOLC1Q14978 699 aaKnown RBP eCLIP10.89□□□□□ -0.673e-26■■□□□ 13.5
SNHG3-201ENST00000413987 LARP1BQ659C4 914 aaKnown RBP10.89□□□□□ -0.67
SNHG3-201ENST00000413987 ILDR1Q86SU0 546 aaPredicted RBP10.89□□□□□ -0.67
SNHG3-201ENST00000413987 SYNE4Q8N205 404 aa10.89□□□□□ -0.67
SNHG3-201ENST00000413987 LSM14AQ8ND56 463 aaKnown RBP10.89□□□□□ -0.67
SNHG3-201ENST00000413987 TMX1Q9H3N1 280 aa10.89□□□□□ -0.67
SNHG3-201ENST00000413987 TMEM63CQ9P1W3 806 aa10.89□□□□□ -0.67
SNHG3-201ENST00000413987 AFDNP55196 1824 aaKnown RBP10.89□□□□□ -0.67
SNHG3-201ENST00000413987 COL5A3P25940 1745 aaPredicted RBP10.89□□□□□ -0.67
SNHG3-201ENST00000413987 TSPAN6O43657 245 aa10.89□□□□□ -0.67
SNHG3-201ENST00000413987 GCKRQ14397 625 aa10.89□□□□□ -0.67
SNHG3-201ENST00000413987 EPHA10Q5JZY3 1008 aa10.89□□□□□ -0.67
SNHG3-201ENST00000413987 TAS1R3Q7RTX0 852 aa10.89□□□□□ -0.67
SNHG3-201ENST00000413987 UBE3BQ7Z3V4 1068 aa10.89□□□□□ -0.67
SNHG3-201ENST00000413987 DZIP3Q86Y13 1208 aaKnown RBP10.89□□□□□ -0.67
SNHG3-201ENST00000413987 EFCAB3Q8N7B9 438 aa10.89□□□□□ -0.67
SNHG3-201ENST00000413987 KAZALD1Q96I82 304 aa10.89□□□□□ -0.67
SNHG3-201ENST00000413987 SUCLG2Q96I99 432 aa10.89□□□□□ -0.67
SNHG3-201ENST00000413987 ANO2Q9NQ90 1003 aa10.89□□□□□ -0.67
SNHG3-201ENST00000413987 DIAPH3Q9NSV4 1193 aa10.89□□□□□ -0.67
SNHG3-201ENST00000413987 MRPS23Q9Y3D9 190 aaKnown RBP10.89□□□□□ -0.67
SNHG3-201ENST00000413987 FAM177BA6PVY3 158 aa10.88□□□□□ -0.67
SNHG3-201ENST00000413987 GRM8O00222 908 aa10.88□□□□□ -0.67
SNHG3-201ENST00000413987 SLC26A4O43511 780 aa10.88□□□□□ -0.67
SNHG3-201ENST00000413987 CASP2P42575 452 aa10.88□□□□□ -0.67
SNHG3-201ENST00000413987 KIF6Q6ZMV9 814 aa10.88□□□□□ -0.67
SNHG3-201ENST00000413987 CHCHD4Q8N4Q1 142 aa10.88□□□□□ -0.67
SNHG3-201ENST00000413987 ANKRD44Q8N8A2 993 aa10.88□□□□□ -0.67
SNHG3-201ENST00000413987 C12orf49Q9H741 205 aa10.88□□□□□ -0.67
SNHG3-201ENST00000413987 CLIC5Q9NZA1 410 aa10.88□□□□□ -0.67
SNHG3-201ENST00000413987 HDAC9Q9UKV0 1011 aa10.88□□□□□ -0.67
SNHG3-201ENST00000413987 A0A087WZG4 1122 aa10.88□□□□□ -0.67
SNHG3-201ENST00000413987 MTA2O94776 668 aa10.88□□□□□ -0.67
SNHG3-201ENST00000413987 GNAI3P08754 354 aa10.88□□□□□ -0.67
SNHG3-201ENST00000413987 CTHP32929 405 aa10.88□□□□□ -0.67
SNHG3-201ENST00000413987 EIF5P55010 431 aaKnown RBP10.88□□□□□ -0.67
SNHG3-201ENST00000413987 EXOSC10Q01780 885 aaKnown RBP10.88□□□□□ -0.67
SNHG3-201ENST00000413987 NFE2Q16621 373 aaPredicted RBP10.88□□□□□ -0.67
SNHG3-201ENST00000413987 PGBD3Q8N328 593 aa10.88□□□□□ -0.67
SNHG3-201ENST00000413987 FEZ1Q99689 392 aa10.88□□□□□ -0.67
SNHG3-201ENST00000413987 PARP2Q9UGN5 583 aa10.88□□□□□ -0.67
SNHG3-201ENST00000413987 EXOC6BQ9Y2D4 811 aa10.88□□□□□ -0.67
SNHG3-201ENST00000413987 MAP3K15Q6ZN16 1313 aa10.87□□□□□ -0.67
SNHG3-201ENST00000413987 FGRP09769 529 aa10.87□□□□□ -0.67
SNHG3-201ENST00000413987 IL6STP40189 918 aaPredicted RBP10.87□□□□□ -0.67
SNHG3-201ENST00000413987 CHAF1AQ13111 956 aaPredicted RBP10.87□□□□□ -0.67
SNHG3-201ENST00000413987 GLYCTKQ8IVS8 523 aa10.87□□□□□ -0.67
SNHG3-201ENST00000413987 PDCL2Q8N4E4 241 aa10.87□□□□□ -0.67
SNHG3-201ENST00000413987 BICC1Q9H694 974 aaKnown RBP10.87□□□□□ -0.67
SNHG3-201ENST00000413987 SPTLC3Q9NUV7 552 aa10.87□□□□□ -0.67
SNHG3-201ENST00000413987 COL15A1P39059 1388 aa10.87□□□□□ -0.67
SNHG3-201ENST00000413987 ALDH1L1O75891 902 aa10.86□□□□□ -0.67
SNHG3-201ENST00000413987 TPM3P06753 285 aa10.86□□□□□ -0.67
SNHG3-201ENST00000413987 MSL1Q68DK7 614 aa10.86□□□□□ -0.67
SNHG3-201ENST00000413987 PPP1R42Q7Z4L9 355 aa10.86□□□□□ -0.67
SNHG3-201ENST00000413987 KLHDC4Q8TBB5 520 aa10.86□□□□□ -0.67
SNHG3-201ENST00000413987 CCDC47Q96A33 483 aaKnown RBP10.86□□□□□ -0.67
SNHG3-201ENST00000413987 TTC14Q96N46 770 aa10.86□□□□□ -0.67
SNHG3-201ENST00000413987 SRP68Q9UHB9 627 aaKnown RBP10.86□□□□□ -0.67
SNHG3-201ENST00000413987 EGFL7Q9UHF1 273 aa10.86□□□□□ -0.67
SNHG3-201ENST00000413987 LY75O60449 1722 aa10.86□□□□□ -0.67
SNHG3-201ENST00000413987 SRGAP3O43295 1099 aa10.86□□□□□ -0.67
SNHG3-201ENST00000413987 APBA3O96018 575 aa10.86□□□□□ -0.67
SNHG3-201ENST00000413987 MYL3P08590 195 aa10.86□□□□□ -0.67
SNHG3-201ENST00000413987 SERINC3Q13530 473 aa10.86□□□□□ -0.67
SNHG3-201ENST00000413987 PDXDC1Q6P996 788 aa10.86□□□□□ -0.67
SNHG3-201ENST00000413987 RGL4Q8IZJ4 473 aa10.86□□□□□ -0.67
SNHG3-201ENST00000413987 FAM89AQ96GI7 184 aa10.86□□□□□ -0.67
SNHG3-201ENST00000413987 USP26Q9BXU7 913 aa10.86□□□□□ -0.67
SNHG3-201ENST00000413987 PTPRHQ9HD43 1115 aa10.86□□□□□ -0.67
SNHG3-201ENST00000413987 ZNF69Q9UC07 566 aa10.86□□□□□ -0.67
SNHG3-201ENST00000413987 UBN2Q6ZU65 1347 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms