RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 CNNM4Q6P4Q7 775 aa14.75□□□□□ -0.05
CCDC88A-204ENST00000413716 S100BP04271 92 aaPredicted RBP14.75□□□□□ -0.05
CCDC88A-204ENST00000413716 HAUS1Q96CS2 278 aa14.75□□□□□ -0.05
CCDC88A-204ENST00000413716 ZBTB12Q9Y330 459 aaPredicted RBP14.75□□□□□ -0.05
CCDC88A-204ENST00000413716 ELP1O95163 1332 aa14.75□□□□□ -0.05
CCDC88A-204ENST00000413716 SPTLC2O15270 562 aa14.75□□□□□ -0.05
CCDC88A-204ENST00000413716 HAND2P61296 217 aa14.75□□□□□ -0.05
CCDC88A-204ENST00000413716 DCUN1D2Q6PH85 259 aa14.75□□□□□ -0.05
CCDC88A-204ENST00000413716 TBC1D9Q6ZT07 1266 aa14.75□□□□□ -0.05
CCDC88A-204ENST00000413716 CDC5LQ99459 802 aaKnown RBP14.75□□□□□ -0.05
CCDC88A-204ENST00000413716 CARD10Q9BWT7 1032 aa14.75□□□□□ -0.05
CCDC88A-204ENST00000413716 TXLNGQ9NUQ3 528 aa14.75□□□□□ -0.05
CCDC88A-204ENST00000413716 FLOT2Q14254 428 aa14.74□□□□□ -0.05
CCDC88A-204ENST00000413716 VEZTQ9HBM0 779 aa14.74□□□□□ -0.05
CCDC88A-204ENST00000413716 U2AF2P26368 475 aaKnown RBP eCLIP14.74□□□□□ -0.055e-7■■■■□ 23.2
CCDC88A-204ENST00000413716 ALDH1L2Q3SY69 923 aa14.74□□□□□ -0.05
CCDC88A-204ENST00000413716 CHMP6Q96FZ7 201 aa14.74□□□□□ -0.05
CCDC88A-204ENST00000413716 SMARCA4P51532 1647 aa14.74□□□□□ -0.05
CCDC88A-204ENST00000413716 SECISBP2LQ93073 1101 aaKnown RBP14.74□□□□□ -0.05
CCDC88A-204ENST00000413716 PIP4K2CQ8TBX8 421 aa14.74□□□□□ -0.05
CCDC88A-204ENST00000413716 NOC4LQ9BVI4 516 aaKnown RBP14.74□□□□□ -0.05
CCDC88A-204ENST00000413716 MED4Q9NPJ6 270 aa14.74□□□□□ -0.05
CCDC88A-204ENST00000413716 GNL1P36915 607 aaPredicted RBP14.74□□□□□ -0.05
CCDC88A-204ENST00000413716 MAIP1Q8WWC4 291 aa14.74□□□□□ -0.05
CCDC88A-204ENST00000413716 NOP14P78316 857 aaKnown RBP14.74□□□□□ -0.05
CCDC88A-204ENST00000413716 DTHD1Q6ZMT9 781 aa14.74□□□□□ -0.05
CCDC88A-204ENST00000413716 NUCB1Q02818 461 aa14.74□□□□□ -0.05
CCDC88A-204ENST00000413716 SYNRGQ9UMZ2 1314 aa14.74□□□□□ -0.05
CCDC88A-204ENST00000413716 EFCAB14O75071 495 aa14.74□□□□□ -0.05
CCDC88A-204ENST00000413716 SLMAPQ14BN4 828 aa14.74□□□□□ -0.05
CCDC88A-204ENST00000413716 PALM2Q8IXS6 379 aa14.74□□□□□ -0.05
CCDC88A-204ENST00000413716 ZNF277Q9NRM2 450 aaPredicted RBP14.74□□□□□ -0.05
CCDC88A-204ENST00000413716 GJC2Q5T442 439 aaPredicted RBP14.73□□□□□ -0.05
CCDC88A-204ENST00000413716 CTNNA1P35221 906 aaKnown RBP14.73□□□□□ -0.05
CCDC88A-204ENST00000413716 ARHGAP44Q17R89 818 aa14.73□□□□□ -0.05
CCDC88A-204ENST00000413716 IGSF22Q8N9C0 903 aa14.73□□□□□ -0.05
CCDC88A-204ENST00000413716 HDAC11Q96DB2 347 aa14.73□□□□□ -0.05
CCDC88A-204ENST00000413716 MYD88Q99836 296 aa14.73□□□□□ -0.05
CCDC88A-204ENST00000413716 RIOK1Q9BRS2 568 aaKnown RBP14.73□□□□□ -0.05
CCDC88A-204ENST00000413716 GSTA4O15217 222 aa14.73□□□□□ -0.05
CCDC88A-204ENST00000413716 GNA11P29992 359 aa14.73□□□□□ -0.05
CCDC88A-204ENST00000413716 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.73□□□□□ -0.05
CCDC88A-204ENST00000413716 SKA2Q8WVK7 121 aaPredicted RBP14.73□□□□□ -0.05
CCDC88A-204ENST00000413716 ZNF692Q9BU19 519 aaPredicted RBP14.73□□□□□ -0.05
CCDC88A-204ENST00000413716 KLF18A0A0U1RQI7 1052 aa14.73□□□□□ -0.05
CCDC88A-204ENST00000413716 FLOT1O75955 427 aa14.73□□□□□ -0.05
CCDC88A-204ENST00000413716 ZC3H15Q8WU90 426 aaKnown RBP14.73□□□□□ -0.05
CCDC88A-204ENST00000413716 KRT82Q9NSB4 513 aa14.73□□□□□ -0.05
CCDC88A-204ENST00000413716 HP1BP3Q5SSJ5 553 aaPredicted RBP14.73□□□□□ -0.05
CCDC88A-204ENST00000413716 PTPRCP08575 1304 aa14.73□□□□□ -0.05
CCDC88A-204ENST00000413716 GOLGA8KD6RF30 607 aa14.73□□□□□ -0.05
CCDC88A-204ENST00000413716 ENAHQ8N8S7 591 aaPredicted RBP14.73□□□□□ -0.05
CCDC88A-204ENST00000413716 MKL2Q9ULH7 1088 aa14.73□□□□□ -0.05
CCDC88A-204ENST00000413716 DACT1Q9NYF0 836 aa14.72□□□□□ -0.05
CCDC88A-204ENST00000413716 KRT8P05787 483 aa14.72□□□□□ -0.05
CCDC88A-204ENST00000413716 DIABLOQ9NR28 239 aa14.72□□□□□ -0.05
CCDC88A-204ENST00000413716 TMOD4Q9NZQ9 345 aa14.72□□□□□ -0.05
CCDC88A-204ENST00000413716 NUP58Q9BVL2 599 aa14.72□□□□□ -0.05
CCDC88A-204ENST00000413716 CDV3Q9UKY7 258 aaKnown RBP14.72□□□□□ -0.05
CCDC88A-204ENST00000413716 CADPSQ9ULU8 1353 aa14.72□□□□□ -0.05
CCDC88A-204ENST00000413716 DDX41Q9UJV9 622 aaKnown RBP14.72□□□□□ -0.05
CCDC88A-204ENST00000413716 ELF2Q15723 593 aa14.72□□□□□ -0.05
CCDC88A-204ENST00000413716 GRK7Q8WTQ7 553 aa14.72□□□□□ -0.05
CCDC88A-204ENST00000413716 TRIM8Q9BZR9 551 aa14.72□□□□□ -0.05
CCDC88A-204ENST00000413716 BCRP11274 1271 aa14.71□□□□□ -0.05
CCDC88A-204ENST00000413716 PPP2R5EQ16537 467 aa14.71□□□□□ -0.05
CCDC88A-204ENST00000413716 SFMBT1Q9UHJ3 866 aa14.71□□□□□ -0.05
CCDC88A-204ENST00000413716 TRMT112Q9UI30 125 aaKnown RBP14.71□□□□□ -0.05
CCDC88A-204ENST00000413716 TMTC3Q6ZXV5 915 aa14.71□□□□□ -0.05
CCDC88A-204ENST00000413716 IQUBQ8NA54 791 aa14.71□□□□□ -0.05
CCDC88A-204ENST00000413716 BRAPQ7Z569 592 aa14.71□□□□□ -0.05
CCDC88A-204ENST00000413716 CCDC8Q9H0W5 538 aaPredicted RBP14.71□□□□□ -0.05
CCDC88A-204ENST00000413716 BSPRYQ5W0U4 402 aa14.71□□□□□ -0.05
CCDC88A-204ENST00000413716 KRT80Q6KB66 452 aa14.71□□□□□ -0.05
CCDC88A-204ENST00000413716 TYW1Q9NV66 732 aaKnown RBP14.71□□□□□ -0.05
CCDC88A-204ENST00000413716 SPDYE16A6NNV3 312 aaPredicted RBP14.71□□□□□ -0.05
CCDC88A-204ENST00000413716 C6orf229H3BNL8 230 aa14.71□□□□□ -0.05
CCDC88A-204ENST00000413716 SPDYE2Q495Y8 402 aa14.71□□□□□ -0.05
CCDC88A-204ENST00000413716 ZBTB21Q9ULJ3 1066 aa14.71□□□□□ -0.05
CCDC88A-204ENST00000413716 EXOC7Q9UPT5 735 aa14.71□□□□□ -0.05
CCDC88A-204ENST00000413716 STRN3Q13033 797 aa14.71□□□□□ -0.06
CCDC88A-204ENST00000413716 SLC9C1Q4G0N8 1177 aa14.71□□□□□ -0.06
CCDC88A-204ENST00000413716 SV2BQ7L1I2 683 aa14.71□□□□□ -0.06
CCDC88A-204ENST00000413716 PEX26Q7Z412 305 aa14.71□□□□□ -0.06
CCDC88A-204ENST00000413716 ZSCAN32Q9NX65 697 aa14.71□□□□□ -0.06
CCDC88A-204ENST00000413716 ZRANB1Q9UGI0 708 aa14.71□□□□□ -0.06
CCDC88A-204ENST00000413716 TRAF5O00463 557 aa14.71□□□□□ -0.06
CCDC88A-204ENST00000413716 MAP3K7O43318 606 aa14.71□□□□□ -0.06
CCDC88A-204ENST00000413716 DDX42Q86XP3 938 aaKnown RBP eCLIP14.71□□□□□ -0.06
CCDC88A-204ENST00000413716 RIC8AQ9NPQ8 531 aa14.71□□□□□ -0.06
CCDC88A-204ENST00000413716 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.71□□□□□ -0.06
CCDC88A-204ENST00000413716 NEUROG2Q9H2A3 272 aa14.7□□□□□ -0.06
CCDC88A-204ENST00000413716 NMIQ13287 307 aaPredicted RBP14.7□□□□□ -0.06
CCDC88A-204ENST00000413716 ANKRD42Q8N9B4 389 aa14.7□□□□□ -0.06
CCDC88A-204ENST00000413716 MRPL28Q13084 256 aaKnown RBP14.7□□□□□ -0.06
CCDC88A-204ENST00000413716 TEX12Q9BXU0 123 aa14.7□□□□□ -0.06
CCDC88A-204ENST00000413716 KRT81Q14533 505 aa14.7□□□□□ -0.06
CCDC88A-204ENST00000413716 CAPS2Q9BXY5 557 aa14.7□□□□□ -0.06
CCDC88A-204ENST00000413716 ECHDC1Q9NTX5 307 aa14.7□□□□□ -0.06
CCDC88A-204ENST00000413716 ERBINQ96RT1 1412 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms