RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 NOL10Q9BSC4 688 aaKnown RBP13.39□□□□□ -0.27
LINC00539-201ENST00000411525 UPF3BQ9BZI7 483 aaKnown RBP13.39□□□□□ -0.27
LINC00539-201ENST00000411525 AATFQ9NY61 560 aaKnown RBP eCLIP13.39□□□□□ -0.27
LINC00539-201ENST00000411525 TAF6LQ9Y6J9 622 aa13.39□□□□□ -0.27
LINC00539-201ENST00000411525 GSG1L2A8MUP6 293 aa13.38□□□□□ -0.27
LINC00539-201ENST00000411525 SLC34A2O95436 690 aa13.38□□□□□ -0.27
LINC00539-201ENST00000411525 CASTP20810 708 aaKnown RBP13.38□□□□□ -0.27
LINC00539-201ENST00000411525 NOM1Q5C9Z4 860 aaKnown RBP13.38□□□□□ -0.27
LINC00539-201ENST00000411525 PRAMEF18Q5VWM3 479 aa13.38□□□□□ -0.27
LINC00539-201ENST00000411525 CERS3Q8IU89 383 aa13.38□□□□□ -0.27
LINC00539-201ENST00000411525 IFNL3Q8IZI9 196 aa13.38□□□□□ -0.27
LINC00539-201ENST00000411525 CERS5Q8N5B7 392 aa13.38□□□□□ -0.27
LINC00539-201ENST00000411525 MXD3Q9BW11 206 aa13.38□□□□□ -0.27
LINC00539-201ENST00000411525 CRNKL1Q9BZJ0 848 aaKnown RBP13.38□□□□□ -0.27
LINC00539-201ENST00000411525 NACAP1Q9BZK3 213 aa13.38□□□□□ -0.27
LINC00539-201ENST00000411525 NAPBQ9H115 298 aa13.38□□□□□ -0.27
LINC00539-201ENST00000411525 ZSWIM6Q9HCJ5 1215 aa13.38□□□□□ -0.27
LINC00539-201ENST00000411525 GAKO14976 1311 aa13.38□□□□□ -0.27
LINC00539-201ENST00000411525 DDX60LQ5H9U9 1706 aaKnown RBP13.37□□□□□ -0.27
LINC00539-201ENST00000411525 K7ELQ4 463 aaPredicted RBP13.37□□□□□ -0.27
LINC00539-201ENST00000411525 PRKAB2O43741 272 aa13.37□□□□□ -0.27
LINC00539-201ENST00000411525 BAG3O95817 575 aa13.37□□□□□ -0.27
LINC00539-201ENST00000411525 TDO2P48775 406 aa13.37□□□□□ -0.27
LINC00539-201ENST00000411525 MCM2P49736 904 aa13.37□□□□□ -0.27
LINC00539-201ENST00000411525 BLOC1S2Q6QNY1 142 aa13.37□□□□□ -0.27
LINC00539-201ENST00000411525 MOB2Q70IA6 237 aa13.37□□□□□ -0.27
LINC00539-201ENST00000411525 KIAA0825Q8IV33 1275 aa13.37□□□□□ -0.27
LINC00539-201ENST00000411525 SDR42E1Q8WUS8 393 aa13.37□□□□□ -0.27
LINC00539-201ENST00000411525 SCAF8Q9UPN6 1271 aaKnown RBP13.37□□□□□ -0.27
LINC00539-201ENST00000411525 CYP46A1Q9Y6A2 500 aa13.37□□□□□ -0.27
LINC00539-201ENST00000411525 CDK5RAP2Q96SN8 1893 aa13.37□□□□□ -0.27
LINC00539-201ENST00000411525 FOCADQ5VW36 1801 aa13.36□□□□□ -0.27
LINC00539-201ENST00000411525 ZNF213O14771 459 aa13.36□□□□□ -0.27
LINC00539-201ENST00000411525 MYO1BO43795 1136 aa13.36□□□□□ -0.27
LINC00539-201ENST00000411525 ALDH1A1P00352 501 aa13.36□□□□□ -0.27
LINC00539-201ENST00000411525 SLC4A3P48751 1232 aa13.36□□□□□ -0.27
LINC00539-201ENST00000411525 PPP4CP60510 307 aa13.36□□□□□ -0.27
LINC00539-201ENST00000411525 HAND2P61296 217 aa13.36□□□□□ -0.27
LINC00539-201ENST00000411525 DLGAP5Q15398 846 aa13.36□□□□□ -0.27
LINC00539-201ENST00000411525 GIMAP6Q6P9H5 292 aa13.36□□□□□ -0.27
LINC00539-201ENST00000411525 STOX1Q6ZVD7 989 aa13.36□□□□□ -0.27
LINC00539-201ENST00000411525 RUFY3Q7L099 469 aa13.36□□□□□ -0.27
LINC00539-201ENST00000411525 FAM163AQ96GL9 167 aaPredicted RBP13.36□□□□□ -0.27
LINC00539-201ENST00000411525 ZBED3Q96IU2 234 aaPredicted RBP13.36□□□□□ -0.27
LINC00539-201ENST00000411525 TTC14Q96N46 770 aa13.36□□□□□ -0.27
LINC00539-201ENST00000411525 NEK1Q96PY6 1258 aa13.36□□□□□ -0.27
LINC00539-201ENST00000411525 TTF2Q9UNY4 1162 aaKnown RBP13.36□□□□□ -0.27
LINC00539-201ENST00000411525 PPP2R3BQ9Y5P8 575 aa13.36□□□□□ -0.27
LINC00539-201ENST00000411525 BAZ2AQ9UIF9 1905 aaKnown RBP13.35□□□□□ -0.27
LINC00539-201ENST00000411525 GPR75-ASB3A0A0A6YYF3 556 aa13.35□□□□□ -0.27
LINC00539-201ENST00000411525 UNCXA6NJT0 531 aa13.35□□□□□ -0.27
LINC00539-201ENST00000411525 E7EWF7 191 aa13.35□□□□□ -0.27
LINC00539-201ENST00000411525 F8W031 263 aaPredicted RBP13.35□□□□□ -0.27
LINC00539-201ENST00000411525 TBC1D8O95759 1140 aa13.35□□□□□ -0.27
LINC00539-201ENST00000411525 RPS6KB1P23443 525 aa13.35□□□□□ -0.27
LINC00539-201ENST00000411525 BTDP43251 543 aa13.35□□□□□ -0.27
LINC00539-201ENST00000411525 INHBEP58166 350 aa13.35□□□□□ -0.27
LINC00539-201ENST00000411525 MTMR14Q8NCE2 650 aa13.35□□□□□ -0.27
LINC00539-201ENST00000411525 CFHR5Q9BXR6 569 aa13.35□□□□□ -0.27
LINC00539-201ENST00000411525 GPR25O00155 361 aa13.34□□□□□ -0.27
LINC00539-201ENST00000411525 PPP1R12BO60237 982 aaPredicted RBP13.34□□□□□ -0.27
LINC00539-201ENST00000411525 HMGB1P09429 215 aaKnown RBP13.34□□□□□ -0.27
LINC00539-201ENST00000411525 CPA1P15085 419 aa13.34□□□□□ -0.27
LINC00539-201ENST00000411525 PLCG2P16885 1265 aa13.34□□□□□ -0.27
LINC00539-201ENST00000411525 LDLRAD1Q5T700 205 aa13.34□□□□□ -0.27
LINC00539-201ENST00000411525 TBC1D10CQ8IV04 446 aa13.34□□□□□ -0.27
LINC00539-201ENST00000411525 SH3RF3Q8TEJ3 882 aaPredicted RBP13.34□□□□□ -0.27
LINC00539-201ENST00000411525 ZNF296Q8WUU4 475 aaPredicted RBP13.34□□□□□ -0.27
LINC00539-201ENST00000411525 TEKT1Q969V4 418 aa13.34□□□□□ -0.27
LINC00539-201ENST00000411525 NBPF3Q9H094 633 aa13.34□□□□□ -0.27
LINC00539-201ENST00000411525 DEFB129Q9H1M3 183 aa13.34□□□□□ -0.27
LINC00539-201ENST00000411525 ATP8A2Q9NTI2 1148 aa13.34□□□□□ -0.27
LINC00539-201ENST00000411525 PDRG1Q9NUG6 133 aa13.34□□□□□ -0.27
LINC00539-201ENST00000411525 ANGEL1Q9UNK9 670 aaKnown RBP13.34□□□□□ -0.27
LINC00539-201ENST00000411525 DAGLAQ9Y4D2 1042 aa13.34□□□□□ -0.27
LINC00539-201ENST00000411525 USP5P45974 858 aa13.33□□□□□ -0.28
LINC00539-201ENST00000411525 AK2P54819 239 aa13.33□□□□□ -0.28
LINC00539-201ENST00000411525 SOX10P56693 466 aa13.33□□□□□ -0.28
LINC00539-201ENST00000411525 PRKG1Q13976 671 aa13.33□□□□□ -0.28
LINC00539-201ENST00000411525 MAP3K11Q16584 847 aa13.33□□□□□ -0.28
LINC00539-201ENST00000411525 SUPT20HL1Q3ZLR7 823 aa13.33□□□□□ -0.28
LINC00539-201ENST00000411525 SPRYD7Q5W111 196 aa13.33□□□□□ -0.28
LINC00539-201ENST00000411525 HHIPL2Q6UWX4 724 aa13.33□□□□□ -0.28
LINC00539-201ENST00000411525 RALYLQ86SE5 291 aaKnown RBP13.33□□□□□ -0.28
LINC00539-201ENST00000411525 DCP1AQ9NPI6 582 aaPredicted RBP13.33□□□□□ -0.28
LINC00539-201ENST00000411525 ARPP21Q9UBL0 812 aaPredicted RBP13.33□□□□□ -0.28
LINC00539-201ENST00000411525 HPS5Q9UPZ3 1129 aa13.33□□□□□ -0.28
LINC00539-201ENST00000411525 MANSC4A6NHS7 340 aaPredicted RBP13.32□□□□□ -0.28
LINC00539-201ENST00000411525 FKTNO75072 461 aa13.32□□□□□ -0.28
LINC00539-201ENST00000411525 ZBTB48P10074 688 aaPredicted RBP13.32□□□□□ -0.28
LINC00539-201ENST00000411525 CRKP46108 304 aa13.32□□□□□ -0.28
LINC00539-201ENST00000411525 HDLBPQ00341 1268 aaKnown RBP13.32□□□□□ -0.28
LINC00539-201ENST00000411525 PPARAQ07869 468 aa13.32□□□□□ -0.28
LINC00539-201ENST00000411525 MKRN3Q13064 507 aaKnown RBP13.32□□□□□ -0.28
LINC00539-201ENST00000411525 COL9A3Q14050 684 aaPredicted RBP13.32□□□□□ -0.28
LINC00539-201ENST00000411525 FBXO46Q6PJ61 603 aaPredicted RBP13.32□□□□□ -0.28
LINC00539-201ENST00000411525 TEX11Q8IYF3 940 aa13.32□□□□□ -0.28
LINC00539-201ENST00000411525 NCOA7Q8NI08 942 aa13.32□□□□□ -0.28
LINC00539-201ENST00000411525 SLC10A4Q96EP9 437 aa13.32□□□□□ -0.28
LINC00539-201ENST00000411525 ALDH8A1Q9H2A2 487 aaPredicted RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms