RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 FOCADQ5VW36 1801 aa18.02■□□□□ 0.48
CBX3-203ENST00000409747 ATAD5Q96QE3 1844 aa18.02■□□□□ 0.48
CBX3-203ENST00000409747 FMNL1O95466 1100 aaPredicted RBP18.02■□□□□ 0.48
CBX3-203ENST00000409747 BCRP11274 1271 aa18.02■□□□□ 0.48
CBX3-203ENST00000409747 ZAP70P43403 619 aa18.02■□□□□ 0.48
CBX3-203ENST00000409747 TMED8Q6PL24 325 aaPredicted RBP18.02■□□□□ 0.48
CBX3-203ENST00000409747 TRIM47Q96LD4 638 aa18.02■□□□□ 0.48
CBX3-203ENST00000409747 CCDC8Q9H0W5 538 aaPredicted RBP18.02■□□□□ 0.48
CBX3-203ENST00000409747 SRRDQ9UH36 339 aa18.02■□□□□ 0.48
CBX3-203ENST00000409747 SLURP2P0DP57 97 aa18.01■□□□□ 0.47
CBX3-203ENST00000409747 CYP2C8P10632 490 aa18.01■□□□□ 0.47
CBX3-203ENST00000409747 FCGRTP55899 365 aa18.01■□□□□ 0.47
CBX3-203ENST00000409747 SLC4A8Q2Y0W8 1093 aa18.01■□□□□ 0.47
CBX3-203ENST00000409747 SMCR8Q8TEV9 937 aaPredicted RBP18.01■□□□□ 0.47
CBX3-203ENST00000409747 EAF2Q96CJ1 260 aaPredicted RBP18.01■□□□□ 0.47
CBX3-203ENST00000409747 TLR7Q9NYK1 1049 aaKnown RBP18.01■□□□□ 0.47
CBX3-203ENST00000409747 PNMA3Q9UL41 463 aa18.01■□□□□ 0.47
CBX3-203ENST00000409747 MKI67P46013 3256 aaKnown RBP18.01■□□□□ 0.47
CBX3-203ENST00000409747 FAM196BA6NMK8 535 aa18.01■□□□□ 0.47
CBX3-203ENST00000409747 CAP2P40123 477 aa18.01■□□□□ 0.47
CBX3-203ENST00000409747 RAET1EQ8TD07 263 aa18.01■□□□□ 0.47
CBX3-203ENST00000409747 AGTPBP1Q9UPW5 1226 aa18.01■□□□□ 0.47
CBX3-203ENST00000409747 FLT1P17948 1338 aa18■□□□□ 0.47
CBX3-203ENST00000409747 MYPNQ86TC9 1320 aa18■□□□□ 0.47
CBX3-203ENST00000409747 CDK5RAP2Q96SN8 1893 aa18■□□□□ 0.47
CBX3-203ENST00000409747 OSBPP22059 807 aa18■□□□□ 0.47
CBX3-203ENST00000409747 PROCA1Q8NCQ7 364 aaPredicted RBP18■□□□□ 0.47
CBX3-203ENST00000409747 ZNF280CQ8ND82 737 aa18■□□□□ 0.47
CBX3-203ENST00000409747 SH3TC2Q8TF17 1288 aa18■□□□□ 0.47
CBX3-203ENST00000409747 TGFBRAP1Q8WUH2 860 aa18■□□□□ 0.47
CBX3-203ENST00000409747 TRIM34Q9BYJ4 488 aa18■□□□□ 0.47
CBX3-203ENST00000409747 AS3MTQ9HBK9 375 aa18■□□□□ 0.47
CBX3-203ENST00000409747 PIH1D3Q9NQM4 214 aaKnown RBP18■□□□□ 0.47
CBX3-203ENST00000409747 EXOC6BQ9Y2D4 811 aa18■□□□□ 0.47
CBX3-203ENST00000409747 MYO5AQ9Y4I1 1855 aaKnown RBP17.99■□□□□ 0.47
CBX3-203ENST00000409747 LOC285556D6RIA3 1793 aa17.99■□□□□ 0.47
CBX3-203ENST00000409747 ECM2O94769 699 aaPredicted RBP17.99■□□□□ 0.47
CBX3-203ENST00000409747 ADGRA1Q86SQ6 560 aa17.99■□□□□ 0.47
CBX3-203ENST00000409747 AACSQ86V21 672 aa17.99■□□□□ 0.47
CBX3-203ENST00000409747 CHMP4BQ9H444 224 aaKnown RBP17.99■□□□□ 0.47
CBX3-203ENST00000409747 DDX19BQ9UMR2 479 aa17.99■□□□□ 0.47
CBX3-203ENST00000409747 MGAMO43451 1857 aa17.99■□□□□ 0.47
CBX3-203ENST00000409747 KIAA0100Q14667 2235 aaKnown RBP17.98■□□□□ 0.47
CBX3-203ENST00000409747 USP17L5A8MUK1 530 aa17.98■□□□□ 0.47
CBX3-203ENST00000409747 HMMRO75330 724 aa17.98■□□□□ 0.47
CBX3-203ENST00000409747 IDH1O75874 414 aaKnown RBP17.98■□□□□ 0.47
CBX3-203ENST00000409747 SLC34A2O95436 690 aa17.98■□□□□ 0.47
CBX3-203ENST00000409747 HLA-DOAP06340 250 aa17.98■□□□□ 0.47
CBX3-203ENST00000409747 EN2P19622 333 aaPredicted RBP17.98■□□□□ 0.47
CBX3-203ENST00000409747 CTGFP29279 349 aa17.98■□□□□ 0.47
CBX3-203ENST00000409747 PABPC4Q13310 644 aaKnown RBP eCLIP17.98■□□□□ 0.475e-6■□□□□ 10.7
CBX3-203ENST00000409747 MAPKAPK5Q8IW41 473 aa17.98■□□□□ 0.47
CBX3-203ENST00000409747 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.98■□□□□ 0.47
CBX3-203ENST00000409747 SIPA1L1O43166 1804 aa17.98■□□□□ 0.47
CBX3-203ENST00000409747 CYP7A1P22680 504 aa17.98■□□□□ 0.47
CBX3-203ENST00000409747 MAP3K12Q12852 859 aa17.98■□□□□ 0.47
CBX3-203ENST00000409747 SPP2Q13103 211 aa17.98■□□□□ 0.47
CBX3-203ENST00000409747 CCDC84Q86UT8 332 aaPredicted RBP17.98■□□□□ 0.47
CBX3-203ENST00000409747 FOXP4Q8IVH2 680 aaPredicted RBP17.98■□□□□ 0.47
CBX3-203ENST00000409747 RPAP2Q8IXW5 612 aaPredicted RBP17.98■□□□□ 0.47
CBX3-203ENST00000409747 CRACR2BQ8N4Y2 399 aaPredicted RBP17.98■□□□□ 0.47
CBX3-203ENST00000409747 ASNSP08243 561 aa17.97■□□□□ 0.47
CBX3-203ENST00000409747 GRK4P32298 578 aa17.97■□□□□ 0.47
CBX3-203ENST00000409747 GINM1Q9NU53 330 aa17.97■□□□□ 0.47
CBX3-203ENST00000409747 METTL16Q86W50 562 aaKnown RBP17.96■□□□□ 0.47
CBX3-203ENST00000409747 CLASRPQ8N2M8 674 aaKnown RBP17.96■□□□□ 0.47
CBX3-203ENST00000409747 KIF1BPQ96EK5 621 aa17.96■□□□□ 0.47
CBX3-203ENST00000409747 MYCP01106 439 aaPredicted RBP17.95■□□□□ 0.46
CBX3-203ENST00000409747 PRKCZQ05513 592 aa17.95■□□□□ 0.46
CBX3-203ENST00000409747 TTF1Q15361 905 aaPredicted RBP17.95■□□□□ 0.46
CBX3-203ENST00000409747 TREML2Q5T2D2 321 aa17.95■□□□□ 0.46
CBX3-203ENST00000409747 MAGEB6Q8N7X4 407 aa17.95■□□□□ 0.46
CBX3-203ENST00000409747 SLAIN1Q8ND83 568 aa17.95■□□□□ 0.46
CBX3-203ENST00000409747 RHPN1Q8TCX5 695 aa17.95■□□□□ 0.46
CBX3-203ENST00000409747 TNPO2O14787 897 aaKnown RBP17.95■□□□□ 0.46
CBX3-203ENST00000409747 GCLCP48506 637 aaPredicted RBP17.95■□□□□ 0.46
CBX3-203ENST00000409747 HMGCS2P54868 508 aa17.95■□□□□ 0.46
CBX3-203ENST00000409747 UBXN2AP68543 259 aa17.95■□□□□ 0.46
CBX3-203ENST00000409747 FAM110CQ1W6H9 321 aa17.95■□□□□ 0.46
CBX3-203ENST00000409747 SH3D19Q5HYK7 790 aa17.95■□□□□ 0.46
CBX3-203ENST00000409747 GCC1Q96CN9 775 aa17.95■□□□□ 0.46
CBX3-203ENST00000409747 WDR18Q9BV38 432 aa17.95■□□□□ 0.46
CBX3-203ENST00000409747 IL1RAPL2Q9NP60 686 aa17.95■□□□□ 0.46
CBX3-203ENST00000409747 PALD1Q9ULE6 856 aa17.95■□□□□ 0.46
CBX3-203ENST00000409747 USP5P45974 858 aa17.94■□□□□ 0.46
CBX3-203ENST00000409747 DYNLL1P63167 89 aaKnown RBP17.94■□□□□ 0.46
CBX3-203ENST00000409747 RRP1BQ14684 758 aaKnown RBP17.94■□□□□ 0.46
CBX3-203ENST00000409747 NKX2-3Q8TAU0 364 aa17.94■□□□□ 0.46
CBX3-203ENST00000409747 ZBTB40Q9NUA8 1239 aa17.94■□□□□ 0.46
CBX3-203ENST00000409747 BIN2Q9UBW5 565 aaPredicted RBP17.94■□□□□ 0.46
CBX3-203ENST00000409747 RCAN3Q9UKA8 241 aa17.94■□□□□ 0.46
CBX3-203ENST00000409747 COG6Q9Y2V7 657 aa17.94■□□□□ 0.46
CBX3-203ENST00000409747 MIGA1Q8NAN2 632 aa17.93■□□□□ 0.46
CBX3-203ENST00000409747 DNAJC18Q9H819 358 aa17.93■□□□□ 0.46
CBX3-203ENST00000409747 TMOD4Q9NZQ9 345 aa17.93■□□□□ 0.46
CBX3-203ENST00000409747 SAP30BPQ9UHR5 308 aaKnown RBP17.93■□□□□ 0.46
CBX3-203ENST00000409747 MYH1P12882 1939 aa17.93■□□□□ 0.46
CBX3-203ENST00000409747 RAB11FIP3O75154 756 aa17.92■□□□□ 0.46
CBX3-203ENST00000409747 IFIT2P09913 472 aaKnown RBP17.92■□□□□ 0.46
CBX3-203ENST00000409747 BACE1P56817 501 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms