RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 TRMT1LQ7Z2T5 733 aaKnown RBP8.72□□□□□ -1.01
SYNE1-210ENST00000409694 PPME1Q9Y570 386 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 STX2P32856 288 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 EFHD1Q9BUP0 239 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 NUB1Q9Y5A7 615 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 SLC4A4Q9Y6R1 1079 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 HOXA7P31268 230 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-210ENST00000409694 STAG1Q8WVM7 1258 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 FGD5Q6ZNL6 1462 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 SMARCA5O60264 1052 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-210ENST00000409694 PNMA8AQ86V59 439 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-210ENST00000409694 SCINQ9Y6U3 715 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 NAIPQ13075 1403 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 MYL5Q02045 173 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 DCUN1D2Q6PH85 259 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 TRIM42Q8IWZ5 723 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 NMIQ13287 307 aaPredicted RBP8.71□□□□□ -1.01
SYNE1-210ENST00000409694 MMEL1Q495T6 779 aa8.71□□□□□ -1.01
SYNE1-210ENST00000409694 CFAP70Q5T0N1 1121 aa8.71□□□□□ -1.01
SYNE1-210ENST00000409694 TRIM15Q9C019 465 aa8.71□□□□□ -1.01
SYNE1-210ENST00000409694 RGS16O15492 202 aaPredicted RBP8.71□□□□□ -1.01
SYNE1-210ENST00000409694 GSTA1P08263 222 aa8.71□□□□□ -1.01
SYNE1-210ENST00000409694 GSTA2P09210 222 aa8.71□□□□□ -1.01
SYNE1-210ENST00000409694 HOOK2Q96ED9 719 aa8.71□□□□□ -1.01
SYNE1-210ENST00000409694 CCPG1Q9ULG6 757 aa8.71□□□□□ -1.01
SYNE1-210ENST00000409694 M0QZ92 97 aa8.71□□□□□ -1.01
SYNE1-210ENST00000409694 CCDC8Q9H0W5 538 aaPredicted RBP8.71□□□□□ -1.01
SYNE1-210ENST00000409694 RTEL1Q9NZ71 1219 aa8.71□□□□□ -1.01
SYNE1-210ENST00000409694 MAP3K2Q9Y2U5 619 aa8.71□□□□□ -1.01
SYNE1-210ENST00000409694 IL16Q14005 1332 aa8.71□□□□□ -1.01
SYNE1-210ENST00000409694 TTC41PQ6P2S7 1318 aa8.71□□□□□ -1.01
SYNE1-210ENST00000409694 ARHGAP6O43182 974 aa8.71□□□□□ -1.01
SYNE1-210ENST00000409694 CHMP2AO43633 222 aa8.71□□□□□ -1.01
SYNE1-210ENST00000409694 ASPHQ12797 758 aa8.71□□□□□ -1.01
SYNE1-210ENST00000409694 RAB44Q7Z6P3 723 aaPredicted RBP8.71□□□□□ -1.01
SYNE1-210ENST00000409694 PRPF38AQ8NAV1 312 aaKnown RBP8.71□□□□□ -1.01
SYNE1-210ENST00000409694 BBOF1Q8ND07 529 aa8.71□□□□□ -1.01
SYNE1-210ENST00000409694 TEX12Q9BXU0 123 aa8.71□□□□□ -1.01
SYNE1-210ENST00000409694 MAGEB6P1A0A0J9YX57 407 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 F8W8V4 182 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 BACH1O14867 736 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 SNCBQ16143 134 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 SRRM1Q8IYB3 904 aaKnown RBP8.71□□□□□ -1.02
SYNE1-210ENST00000409694 LRRC43Q8N309 656 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 GTF3C6Q969F1 213 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 DNAJC25Q9H1X3 360 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 RIC8AQ9NPQ8 531 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 TPX2Q9ULW0 747 aaKnown RBP8.71□□□□□ -1.02
SYNE1-210ENST00000409694 ESYT2A0FGR8 921 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 TTI1O43156 1089 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 SERPINB6P35237 376 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 LDHAL6AQ6ZMR3 332 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 A0A1B0GW55 424 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 DUX4L2P0CJ85 424 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 DUX4L3P0CJ86 424 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 DUX4L4P0CJ87 422 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 DUX4L5P0CJ88 424 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 DUX4L6P0CJ89 424 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 DUX4L7P0CJ90 424 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 MX2P20592 715 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 RFC4P35249 363 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 DUX4Q9UBX2 424 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 KCNA4P22459 653 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 CCDC105Q8IYK2 499 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 TBC1D32Q96NH3 1257 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 CENPKQ9BS16 269 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 ZRANB1Q9UGI0 708 aa8.71□□□□□ -1.02
SYNE1-210ENST00000409694 PARP1P09874 1014 aaKnown RBP8.7□□□□□ -1.02
SYNE1-210ENST00000409694 PDE6AP16499 860 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 KARSQ15046 597 aaKnown RBP8.7□□□□□ -1.02
SYNE1-210ENST00000409694 SYT10Q6XYQ8 523 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 LMOD1P29536 600 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-210ENST00000409694 MAN1A1P33908 653 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 MICAL1Q8TDZ2 1067 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 CEP19Q96LK0 163 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 A0A1B0GVL5 298 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 OATP04181 439 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 RRS1Q15050 365 aaKnown RBP8.7□□□□□ -1.02
SYNE1-210ENST00000409694 NXNQ6DKJ4 435 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 RSBN1LQ6PCB5 846 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-210ENST00000409694 Q6ZUG5 572 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 TMCO5AQ8N6Q1 288 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 IFNKQ9P0W0 207 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 COPG1Q9Y678 874 aaKnown RBP8.7□□□□□ -1.02
SYNE1-210ENST00000409694 SRGAP2BP0DMP2 458 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 ATP2B3Q16720 1220 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 ZNF449Q6P9G9 518 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 TMTC1Q8IUR5 882 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 IGSF22Q8N9C0 903 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 GFAPP14136 432 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 ATP6V1AP38606 617 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 TAF11Q15544 211 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 TRIM68Q6AZZ1 485 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 NPHP3Q7Z494 1330 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 ARHGEF9O43307 516 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 NBPF5PQ86XG9 351 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-210ENST00000409694 CTAGE3PQ8IX95 158 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 PALM2Q8IXS6 379 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 RARSP54136 660 aaKnown RBP8.7□□□□□ -1.02
SYNE1-210ENST00000409694 SPZ1Q9BXG8 430 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms