RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 ZMYM6O95789 1325 aa35.05■■■■□ 3.2
USP42-202ENST00000404008 LAMA4Q16363 1823 aa35.05■■■■□ 3.2
USP42-202ENST00000404008 CYP2D7A0A087X1C5 515 aa35.04■■■■□ 3.2
USP42-202ENST00000404008 SLURP2P0DP57 97 aa35.04■■■■□ 3.2
USP42-202ENST00000404008 C2orf69Q8N8R5 385 aa35.04■■■■□ 3.2
USP42-202ENST00000404008 DSCC1Q9BVC3 393 aa35.04■■■■□ 3.2
USP42-202ENST00000404008 HERC5Q9UII4 1024 aaKnown RBP35.04■■■■□ 3.2
USP42-202ENST00000404008 USP2O75604 605 aaPredicted RBP35.03■■■■□ 3.2
USP42-202ENST00000404008 TTLL12Q14166 644 aaPredicted RBP35.03■■■■□ 3.2
USP42-202ENST00000404008 MOB2Q70IA6 237 aa35.03■■■■□ 3.2
USP42-202ENST00000404008 FOXP4Q8IVH2 680 aaPredicted RBP35.03■■■■□ 3.2
USP42-202ENST00000404008 MYH8P13535 1937 aa35.03■■■■□ 3.2
USP42-202ENST00000404008 FGAP02671 866 aa35.02■■■■□ 3.2
USP42-202ENST00000404008 MAP3K11Q16584 847 aa35.02■■■■□ 3.2
USP42-202ENST00000404008 ZNF341Q9BYN7 854 aa35.02■■■■□ 3.2
USP42-202ENST00000404008 SERPINB13Q9UIV8 391 aa35.02■■■■□ 3.2
USP42-202ENST00000404008 ANGEL1Q9UNK9 670 aaKnown RBP35.02■■■■□ 3.2
USP42-202ENST00000404008 FAM196BA6NMK8 535 aa35.01■■■■□ 3.2
USP42-202ENST00000404008 ARMC9Q7Z3E5 817 aa35.01■■■■□ 3.2
USP42-202ENST00000404008 CRACR2BQ8N4Y2 399 aaPredicted RBP35.01■■■■□ 3.2
USP42-202ENST00000404008 DNAJC18Q9H819 358 aa35.01■■■■□ 3.2
USP42-202ENST00000404008 SMIM22K7EJ46 135 aa35■■■■□ 3.19
USP42-202ENST00000404008 XPO5Q9HAV4 1204 aaKnown RBP eCLIP35■■■■□ 3.19
USP42-202ENST00000404008 MINDY4BA8MYZ0 360 aa35■■■■□ 3.19
USP42-202ENST00000404008 IREB2P48200 963 aaKnown RBP35■■■■□ 3.19
USP42-202ENST00000404008 PTH1RQ03431 593 aa35■■■■□ 3.19
USP42-202ENST00000404008 GABPAQ06546 454 aa35■■■■□ 3.19
USP42-202ENST00000404008 KLRG1Q96E93 195 aa35■■■■□ 3.19
USP42-202ENST00000404008 ROBO3Q96MS0 1386 aa35■■■■□ 3.19
USP42-202ENST00000404008 CREBZFQ9NS37 354 aa35■■■■□ 3.19
USP42-202ENST00000404008 ZNF112Q9UJU3 913 aa35■■■■□ 3.19
USP42-202ENST00000404008 ATAD5Q96QE3 1844 aa34.99■■■■□ 3.19
USP42-202ENST00000404008 TRIM34Q9BYJ4 488 aa34.99■■■■□ 3.19
USP42-202ENST00000404008 PHF20L1A8MW92 1017 aa34.98■■■■□ 3.19
USP42-202ENST00000404008 UBE2Q2LH0YL09 131 aa34.98■■■■□ 3.19
USP42-202ENST00000404008 SAPCD2Q86UD0 394 aa34.98■■■■□ 3.19
USP42-202ENST00000404008 DDX55Q8NHQ9 600 aaKnown RBP eCLIP34.98■■■■□ 3.19
USP42-202ENST00000404008 WRNIP1Q96S55 665 aa34.98■■■■□ 3.19
USP42-202ENST00000404008 TAOK2Q9UL54 1235 aa34.98■■■■□ 3.19
USP42-202ENST00000404008 TLL2Q9Y6L7 1015 aa34.98■■■■□ 3.19
USP42-202ENST00000404008 DOCK1Q14185 1865 aa34.97■■■■□ 3.19
USP42-202ENST00000404008 KIAA1211Q6ZU35 1233 aa34.97■■■■□ 3.19
USP42-202ENST00000404008 DYNLL2Q96FJ2 89 aa34.97■■■■□ 3.19
USP42-202ENST00000404008 LSG1Q9H089 658 aaKnown RBP34.97■■■■□ 3.19
USP42-202ENST00000404008 PPARAQ07869 468 aa34.96■■■■□ 3.19
USP42-202ENST00000404008 LDLRAD1Q5T700 205 aa34.96■■■■□ 3.19
USP42-202ENST00000404008 HUNKP57058 714 aa34.95■■■■□ 3.19
USP42-202ENST00000404008 C16orf86Q6ZW13 317 aa34.95■■■■□ 3.19
USP42-202ENST00000404008 ANO2Q9NQ90 1003 aa34.95■■■■□ 3.19
USP42-202ENST00000404008 ABT1Q9ULW3 272 aaKnown RBP34.95■■■■□ 3.19
USP42-202ENST00000404008 HSPA6P17066 643 aa34.94■■■■□ 3.18
USP42-202ENST00000404008 TATDN1Q6P1N9 297 aa34.94■■■■□ 3.18
USP42-202ENST00000404008 MAP4K1Q92918 833 aa34.94■■■■□ 3.18
USP42-202ENST00000404008 SWAP70Q9UH65 585 aa34.94■■■■□ 3.18
USP42-202ENST00000404008 ANAPC4Q9UJX5 808 aa34.94■■■■□ 3.18
USP42-202ENST00000404008 UNCXA6NJT0 531 aa34.93■■■■□ 3.18
USP42-202ENST00000404008 SHMT1P34896 483 aa34.93■■■■□ 3.18
USP42-202ENST00000404008 MAP3K9P80192 1104 aa34.93■■■■□ 3.18
USP42-202ENST00000404008 PPP1R3FQ6ZSY5 799 aaPredicted RBP34.93■■■■□ 3.18
USP42-202ENST00000404008 ANKRD13AQ8IZ07 590 aa34.93■■■■□ 3.18
USP42-202ENST00000404008 SLC44A5Q8NCS7 719 aa34.93■■■■□ 3.18
USP42-202ENST00000404008 CTNNA3Q9UI47 895 aa34.93■■■■□ 3.18
USP42-202ENST00000404008 INPP5BP32019 993 aa34.92■■■■□ 3.18
USP42-202ENST00000404008 ZKSCAN4Q969J2 545 aaPredicted RBP34.92■■■■□ 3.18
USP42-202ENST00000404008 U3KPZ7 1027 aaPredicted RBP34.92■■■■□ 3.18
USP42-202ENST00000404008 CDK8P49336 464 aa34.91■■■■□ 3.18
USP42-202ENST00000404008 VGLL4Q14135 290 aa34.91■■■■□ 3.18
USP42-202ENST00000404008 RRP1BQ14684 758 aaKnown RBP34.91■■■■□ 3.18
USP42-202ENST00000404008 CTNND1O60716 968 aaKnown RBP34.89■■■■□ 3.18
USP42-202ENST00000404008 SLC3A2P08195 630 aaKnown RBP34.89■■■■□ 3.18
USP42-202ENST00000404008 HAND2P61296 217 aa34.89■■■■□ 3.18
USP42-202ENST00000404008 CTDSPL2Q05D32 466 aa34.89■■■■□ 3.18
USP42-202ENST00000404008 STK11IPQ8N1F8 1099 aa34.89■■■■□ 3.18
USP42-202ENST00000404008 CLMNQ96JQ2 1002 aa34.89■■■■□ 3.18
USP42-202ENST00000404008 RBM8AQ9Y5S9 174 aaKnown RBP34.89■■■■□ 3.18
USP42-202ENST00000404008 CSADQ9Y600 493 aa34.89■■■■□ 3.18
USP42-202ENST00000404008 ZNF213O14771 459 aa34.88■■■■□ 3.17
USP42-202ENST00000404008 NOL9Q5SY16 702 aaKnown RBP34.88■■■■□ 3.17
USP42-202ENST00000404008 HHIPL1Q96JK4 782 aa34.88■■■■□ 3.17
USP42-202ENST00000404008 NBPF3Q9H094 633 aa34.88■■■■□ 3.17
USP42-202ENST00000404008 CAP2P40123 477 aa34.87■■■■□ 3.17
USP42-202ENST00000404008 IMMTQ16891 758 aaKnown RBP34.87■■■■□ 3.17
USP42-202ENST00000404008 SNCAIPQ9Y6H5 919 aa34.87■■■■□ 3.17
USP42-202ENST00000404008 REC8O95072 547 aa34.87■■■■□ 3.17
USP42-202ENST00000404008 HTRA3P83110 453 aa34.87■■■■□ 3.17
USP42-202ENST00000404008 CERKLQ49MI3 558 aaPredicted RBP34.87■■■■□ 3.17
USP42-202ENST00000404008 SCYL3Q8IZE3 742 aa34.87■■■■□ 3.17
USP42-202ENST00000404008 PHIPQ8WWQ0 1821 aa34.86■■■■□ 3.17
USP42-202ENST00000404008 RASSF10A6NK89 507 aa34.86■■■■□ 3.17
USP42-202ENST00000404008 PDE4BQ07343 736 aa34.86■■■■□ 3.17
USP42-202ENST00000404008 ZNF287Q9HBT7 754 aa34.86■■■■□ 3.17
USP42-202ENST00000404008 RGMBQ6NW40 437 aa34.85■■■■□ 3.17
USP42-202ENST00000404008 TBC1D10CQ8IV04 446 aa34.85■■■■□ 3.17
USP42-202ENST00000404008 ELP3Q9H9T3 547 aa34.85■■■■□ 3.17
USP42-202ENST00000404008 MKNK2Q9HBH9 465 aa34.85■■■■□ 3.17
USP42-202ENST00000404008 DDX52Q9Y2R4 599 aaKnown RBP eCLIP34.85■■■■□ 3.17
USP42-202ENST00000404008 TACC3Q9Y6A5 838 aa34.85■■■■□ 3.17
USP42-202ENST00000404008 GDF11O95390 407 aa34.84■■■■□ 3.17
USP42-202ENST00000404008 JAG1P78504 1218 aa34.84■■■■□ 3.17
USP42-202ENST00000404008 SHROOM1Q2M3G4 852 aaPredicted RBP34.84■■■■□ 3.17
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms