RNA–Protein interactions for RNA: ENST00000395859.2

VCPKMT-201, Transcript of valosin containing protein lysine methyltransferase, humanhuman

TSL 1 (best) BASIC

Gene VCPKMT, Length 795 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCPKMT-201ENST00000395859 ENTPD3O75355 529 aa17.29■□□□□ 0.36
VCPKMT-201ENST00000395859 ASCC2Q9H1I8 757 aaPredicted RBP17.29■□□□□ 0.36
VCPKMT-201ENST00000395859 USP40Q9NVE5 1235 aa17.29■□□□□ 0.36
VCPKMT-201ENST00000395859 SYNGAP1Q96PV0 1343 aa17.28■□□□□ 0.36
VCPKMT-201ENST00000395859 DDTLA6NHG4 134 aaPredicted RBP17.28■□□□□ 0.36
VCPKMT-201ENST00000395859 RGS3P49796 1198 aa17.28■□□□□ 0.36
VCPKMT-201ENST00000395859 WDR66Q8TBY9 1149 aa17.28■□□□□ 0.36
VCPKMT-201ENST00000395859 SOCS4Q8WXH5 440 aa17.28■□□□□ 0.36
VCPKMT-201ENST00000395859 CHD7Q9P2D1 2997 aa17.28■□□□□ 0.36
VCPKMT-201ENST00000395859 RLFQ13129 1914 aa17.27■□□□□ 0.36
VCPKMT-201ENST00000395859 MYH13Q9UKX3 1938 aa17.27■□□□□ 0.36
VCPKMT-201ENST00000395859 PRDX5P30044 214 aa17.27■□□□□ 0.36
VCPKMT-201ENST00000395859 MAP3K12Q12852 859 aa17.27■□□□□ 0.36
VCPKMT-201ENST00000395859 RABL6Q3YEC7 729 aaPredicted RBP17.27■□□□□ 0.36
VCPKMT-201ENST00000395859 TRMT44Q8IYL2 757 aaKnown RBP17.27■□□□□ 0.36
VCPKMT-201ENST00000395859 LRRFIP2Q9Y608 721 aaKnown RBP17.27■□□□□ 0.36
VCPKMT-201ENST00000395859 CCL14Q16627 93 aa17.26■□□□□ 0.35
VCPKMT-201ENST00000395859 SH3D19Q5HYK7 790 aa17.26■□□□□ 0.35
VCPKMT-201ENST00000395859 MORN1Q5T089 497 aa17.26■□□□□ 0.35
VCPKMT-201ENST00000395859 SUCLG2Q96I99 432 aa17.26■□□□□ 0.35
VCPKMT-201ENST00000395859 NUDT12Q9BQG2 462 aa17.26■□□□□ 0.35
VCPKMT-201ENST00000395859 SENP6Q9GZR1 1112 aaPredicted RBP17.26■□□□□ 0.35
VCPKMT-201ENST00000395859 TXNRD2Q9NNW7 524 aa17.26■□□□□ 0.35
VCPKMT-201ENST00000395859 GAKO14976 1311 aa17.25■□□□□ 0.35
VCPKMT-201ENST00000395859 TBC1D12O60347 775 aa17.25■□□□□ 0.35
VCPKMT-201ENST00000395859 PEX10O60683 326 aa17.25■□□□□ 0.35
VCPKMT-201ENST00000395859 ZKSCAN1P17029 563 aaPredicted RBP17.25■□□□□ 0.35
VCPKMT-201ENST00000395859 SPP2Q13103 211 aa17.25■□□□□ 0.35
VCPKMT-201ENST00000395859 METTL24Q5JXM2 366 aa17.25■□□□□ 0.35
VCPKMT-201ENST00000395859 DDX4Q9NQI0 724 aaKnown RBP17.25■□□□□ 0.35
VCPKMT-201ENST00000395859 HMGCS2P54868 508 aa17.24■□□□□ 0.35
VCPKMT-201ENST00000395859 RTP1P59025 263 aa17.24■□□□□ 0.35
VCPKMT-201ENST00000395859 GRIN2CQ14957 1233 aa17.24■□□□□ 0.35
VCPKMT-201ENST00000395859 POTEEQ6S8J3 1075 aa17.24■□□□□ 0.35
VCPKMT-201ENST00000395859 ZNF280CQ8ND82 737 aa17.24■□□□□ 0.35
VCPKMT-201ENST00000395859 UTYO14607 1347 aa17.23■□□□□ 0.35
VCPKMT-201ENST00000395859 SALL1Q9NSC2 1324 aa17.23■□□□□ 0.35
VCPKMT-201ENST00000395859 IGHA2P01877 340 aa17.23■□□□□ 0.35
VCPKMT-201ENST00000395859 PABPC4Q13310 644 aaKnown RBP eCLIP17.23■□□□□ 0.35
VCPKMT-201ENST00000395859 SNX17Q15036 470 aa17.23■□□□□ 0.35
VCPKMT-201ENST00000395859 ATXN2LQ8WWM7 1075 aaKnown RBP17.23■□□□□ 0.35
VCPKMT-201ENST00000395859 ARIH1Q9Y4X5 557 aaPredicted RBP17.23■□□□□ 0.35
VCPKMT-201ENST00000395859 MYH2Q9UKX2 1941 aa17.22■□□□□ 0.35
VCPKMT-201ENST00000395859 ZBTB22O15209 634 aa17.22■□□□□ 0.35
VCPKMT-201ENST00000395859 VAMP4O75379 141 aa17.22■□□□□ 0.35
VCPKMT-201ENST00000395859 ALDH1L1O75891 902 aa17.22■□□□□ 0.35
VCPKMT-201ENST00000395859 HOXA7P31268 230 aaPredicted RBP17.22■□□□□ 0.35
VCPKMT-201ENST00000395859 ATN1P54259 1190 aaPredicted RBP17.22■□□□□ 0.35
VCPKMT-201ENST00000395859 RRP1BQ14684 758 aaKnown RBP17.22■□□□□ 0.35
VCPKMT-201ENST00000395859 PUM3Q15397 648 aaKnown RBP17.22■□□□□ 0.35
VCPKMT-201ENST00000395859 ANKRD44Q8N8A2 993 aa17.22■□□□□ 0.35
VCPKMT-201ENST00000395859 BADQ92934 168 aa17.22■□□□□ 0.35
VCPKMT-201ENST00000395859 TBC1D2Q9BYX2 928 aa17.22■□□□□ 0.35
VCPKMT-201ENST00000395859 ATAD5Q96QE3 1844 aa17.21■□□□□ 0.35
VCPKMT-201ENST00000395859 DNM1LO00429 736 aa17.21■□□□□ 0.35
VCPKMT-201ENST00000395859 IFIT1P09914 478 aaKnown RBP17.21■□□□□ 0.35
VCPKMT-201ENST00000395859 NBPF7P0C2Y1 421 aaPredicted RBP17.21■□□□□ 0.35
VCPKMT-201ENST00000395859 Q3C1V9 767 aa17.21■□□□□ 0.35
VCPKMT-201ENST00000395859 LPAR1Q92633 364 aa17.21■□□□□ 0.35
VCPKMT-201ENST00000395859 P2RX7Q99572 595 aaKnown RBP17.21■□□□□ 0.35
VCPKMT-201ENST00000395859 APBA2Q99767 749 aa17.21■□□□□ 0.35
VCPKMT-201ENST00000395859 OSBPL5Q9H0X9 879 aaPredicted RBP17.21■□□□□ 0.35
VCPKMT-201ENST00000395859 PORCNQ9H237 461 aa17.21■□□□□ 0.35
VCPKMT-201ENST00000395859 C9orf78Q9NZ63 289 aaPredicted RBP17.21■□□□□ 0.35
VCPKMT-201ENST00000395859 RBPJLQ9UBG7 517 aa17.21■□□□□ 0.35
VCPKMT-201ENST00000395859 PRKAG2Q9UGJ0 569 aa17.21■□□□□ 0.35
VCPKMT-201ENST00000395859 LDHBP07195 334 aaKnown RBP17.2■□□□□ 0.34
VCPKMT-201ENST00000395859 MAPK4P31152 587 aa17.2■□□□□ 0.34
VCPKMT-201ENST00000395859 RGS2P41220 211 aa17.2■□□□□ 0.34
VCPKMT-201ENST00000395859 CCDC27Q2M243 656 aa17.2■□□□□ 0.34
VCPKMT-201ENST00000395859 GPR142Q7Z601 462 aa17.2■□□□□ 0.34
VCPKMT-201ENST00000395859 GPRC5AQ8NFJ5 357 aa17.2■□□□□ 0.34
VCPKMT-201ENST00000395859 ADAMTS19Q8TE59 1207 aa17.2■□□□□ 0.34
VCPKMT-201ENST00000395859 ASB2Q96Q27 587 aa17.2■□□□□ 0.34
VCPKMT-201ENST00000395859 BICC1Q9H694 974 aaKnown RBP17.2■□□□□ 0.34
VCPKMT-201ENST00000395859 PDLIM7Q9NR12 457 aa17.2■□□□□ 0.34
VCPKMT-201ENST00000395859 FLRT1Q9NZU1 646 aa17.2■□□□□ 0.34
VCPKMT-201ENST00000395859 DDX20Q9UHI6 824 aaKnown RBP17.2■□□□□ 0.34
VCPKMT-201ENST00000395859 TRIM43BA6NCK2 446 aa17.19■□□□□ 0.34
VCPKMT-201ENST00000395859 NPM3O75607 178 aaKnown RBP17.19■□□□□ 0.34
VCPKMT-201ENST00000395859 HERVK_113P62684 666 aa17.19■□□□□ 0.34
VCPKMT-201ENST00000395859 KLHDC4Q8TBB5 520 aa17.19■□□□□ 0.34
VCPKMT-201ENST00000395859 TRIM43Q96BQ3 446 aaPredicted RBP17.19■□□□□ 0.34
VCPKMT-201ENST00000395859 FAM163AQ96GL9 167 aaPredicted RBP17.19■□□□□ 0.34
VCPKMT-201ENST00000395859 EPHB4P54760 987 aa17.18■□□□□ 0.34
VCPKMT-201ENST00000395859 ERVK-9P63128 1117 aa17.18■□□□□ 0.34
VCPKMT-201ENST00000395859 ERVK-24P63145 666 aa17.18■□□□□ 0.34
VCPKMT-201ENST00000395859 SLC39A5Q6ZMH5 540 aa17.18■□□□□ 0.34
VCPKMT-201ENST00000395859 SH3RF1Q7Z6J0 888 aa17.18■□□□□ 0.34
VCPKMT-201ENST00000395859 ZSCAN29Q8IWY8 852 aaPredicted RBP17.18■□□□□ 0.34
VCPKMT-201ENST00000395859 IL16Q14005 1332 aa17.18■□□□□ 0.34
VCPKMT-201ENST00000395859 FAM196BA6NMK8 535 aa17.17■□□□□ 0.34
VCPKMT-201ENST00000395859 MSCO60682 206 aa17.17■□□□□ 0.34
VCPKMT-201ENST00000395859 ITGB8P26012 769 aa17.17■□□□□ 0.34
VCPKMT-201ENST00000395859 CAP2P40123 477 aa17.17■□□□□ 0.34
VCPKMT-201ENST00000395859 RHBDL3P58872 404 aa17.17■□□□□ 0.34
VCPKMT-201ENST00000395859 PDE3AQ14432 1141 aa17.17■□□□□ 0.34
VCPKMT-201ENST00000395859 C1orf53Q5VUE5 145 aa17.17■□□□□ 0.34
VCPKMT-201ENST00000395859 WWC1Q8IX03 1113 aa17.17■□□□□ 0.34
VCPKMT-201ENST00000395859 TRPV1Q8NER1 839 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms