RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 TRMT44Q8IYL2 757 aaKnown RBP13.17□□□□□ -0.3
SYNPO-202ENST00000394243 RAB17Q9H0T7 212 aa13.17□□□□□ -0.3
SYNPO-202ENST00000394243 ETF1P62495 437 aaKnown RBP13.17□□□□□ -0.3
SYNPO-202ENST00000394243 PEX26Q7Z412 305 aa13.17□□□□□ -0.3
SYNPO-202ENST00000394243 Q9H521 79 aa13.17□□□□□ -0.3
SYNPO-202ENST00000394243 A0A087WUV0 522 aaPredicted RBP13.17□□□□□ -0.3
SYNPO-202ENST00000394243 KCTD16Q68DU8 428 aa13.17□□□□□ -0.3
SYNPO-202ENST00000394243 HINFPQ9BQA5 517 aa13.17□□□□□ -0.3
SYNPO-202ENST00000394243 IFIH1Q9BYX4 1025 aaKnown RBP13.17□□□□□ -0.3
SYNPO-202ENST00000394243 POLE2P56282 527 aa13.16□□□□□ -0.3
SYNPO-202ENST00000394243 BCAP29Q9UHQ4 241 aa13.16□□□□□ -0.3
SYNPO-202ENST00000394243 ANKRD36BQ8N2N9 1353 aa13.16□□□□□ -0.3
SYNPO-202ENST00000394243 TNNI2P48788 182 aa13.16□□□□□ -0.3
SYNPO-202ENST00000394243 MAP3K21Q5TCX8 1036 aa13.16□□□□□ -0.3
SYNPO-202ENST00000394243 CNNM4Q6P4Q7 775 aa13.16□□□□□ -0.3
SYNPO-202ENST00000394243 CFAP61Q8NHU2 1237 aa13.16□□□□□ -0.3
SYNPO-202ENST00000394243 TCP11Q8WWU5 503 aa13.16□□□□□ -0.3
SYNPO-202ENST00000394243 HOMER3Q9NSC5 361 aa13.16□□□□□ -0.3
SYNPO-202ENST00000394243 MX2P20592 715 aa13.16□□□□□ -0.3
SYNPO-202ENST00000394243 TYW1BQ6NUM6 668 aa13.16□□□□□ -0.3
SYNPO-202ENST00000394243 KIFAP3Q92845 792 aa13.16□□□□□ -0.3
SYNPO-202ENST00000394243 GRM8O00222 908 aa13.16□□□□□ -0.3
SYNPO-202ENST00000394243 CUTAO60888 179 aa13.16□□□□□ -0.3
SYNPO-202ENST00000394243 MSANTD4Q8NCY6 345 aa13.16□□□□□ -0.3
SYNPO-202ENST00000394243 ZKSCAN3Q9BRR0 538 aa13.16□□□□□ -0.3
SYNPO-202ENST00000394243 SNX14Q9Y5W7 946 aa13.16□□□□□ -0.3
SYNPO-202ENST00000394243 RNF113AO15541 343 aaKnown RBP13.16□□□□□ -0.3
SYNPO-202ENST00000394243 POSTNQ15063 836 aa13.16□□□□□ -0.3
SYNPO-202ENST00000394243 RILPL1Q5EBL4 403 aa13.16□□□□□ -0.3
SYNPO-202ENST00000394243 KSR1Q8IVT5 923 aa13.15□□□□□ -0.3
SYNPO-202ENST00000394243 ZPR1O75312 459 aa13.15□□□□□ -0.3
SYNPO-202ENST00000394243 PPFIA2O75334 1257 aa13.15□□□□□ -0.3
SYNPO-202ENST00000394243 HLA-DOAP06340 250 aa13.15□□□□□ -0.3
SYNPO-202ENST00000394243 NCOA5Q9HCD5 579 aaKnown RBP13.15□□□□□ -0.3
SYNPO-202ENST00000394243 TMED1Q13445 227 aa13.15□□□□□ -0.3
SYNPO-202ENST00000394243 ATP2B3Q16720 1220 aa13.15□□□□□ -0.3
SYNPO-202ENST00000394243 ANKRD13DQ6ZTN6 518 aa13.15□□□□□ -0.3
SYNPO-202ENST00000394243 SYCE1Q8N0S2 351 aa13.15□□□□□ -0.3
SYNPO-202ENST00000394243 ATAD2BQ9ULI0 1458 aa13.15□□□□□ -0.3
SYNPO-202ENST00000394243 HNRNPH2P55795 449 aaKnown RBP13.15□□□□□ -0.3
SYNPO-202ENST00000394243 KIFC2Q96AC6 838 aa13.15□□□□□ -0.3
SYNPO-202ENST00000394243 RRP36Q96EU6 259 aaKnown RBP13.15□□□□□ -0.3
SYNPO-202ENST00000394243 PARP2Q9UGN5 583 aa13.15□□□□□ -0.3
SYNPO-202ENST00000394243 SLC27A2O14975 620 aa13.15□□□□□ -0.3
SYNPO-202ENST00000394243 PLCD1P51178 756 aa13.15□□□□□ -0.3
SYNPO-202ENST00000394243 CCDC13Q8IYE1 715 aa13.15□□□□□ -0.3
SYNPO-202ENST00000394243 AFAP1L2Q8N4X5 818 aa13.15□□□□□ -0.3
SYNPO-202ENST00000394243 LLPHQ9BRT6 129 aaKnown RBP13.15□□□□□ -0.3
SYNPO-202ENST00000394243 IQSEC3Q9UPP2 1182 aaPredicted RBP13.15□□□□□ -0.3
SYNPO-202ENST00000394243 VPS37BQ9H9H4 285 aa13.14□□□□□ -0.31
SYNPO-202ENST00000394243 CTTNBP2NLQ9P2B4 639 aa13.14□□□□□ -0.31
SYNPO-202ENST00000394243 LONRF2Q1L5Z9 754 aa13.14□□□□□ -0.31
SYNPO-202ENST00000394243 NELFBQ8WX92 580 aa13.14□□□□□ -0.31
SYNPO-202ENST00000394243 CDC5LQ99459 802 aaKnown RBP13.14□□□□□ -0.31
SYNPO-202ENST00000394243 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.14□□□□□ -0.31
SYNPO-202ENST00000394243 GPT2Q8TD30 523 aa13.14□□□□□ -0.31
SYNPO-202ENST00000394243 BICC1Q9H694 974 aaKnown RBP13.14□□□□□ -0.31
SYNPO-202ENST00000394243 MRFAP1Q9Y605 127 aa13.14□□□□□ -0.31
SYNPO-202ENST00000394243 NSD2O96028 1365 aa13.14□□□□□ -0.31
SYNPO-202ENST00000394243 LGSNQ5TDP6 509 aa13.14□□□□□ -0.31
SYNPO-202ENST00000394243 ZMAT2Q96NC0 199 aaKnown RBP13.14□□□□□ -0.31
SYNPO-202ENST00000394243 RALGAPBQ86X10 1494 aa13.14□□□□□ -0.31
SYNPO-202ENST00000394243 KLHL30Q0D2K2 578 aa13.14□□□□□ -0.31
SYNPO-202ENST00000394243 HSP90AA5PQ58FG0 334 aa13.14□□□□□ -0.31
SYNPO-202ENST00000394243 KDM2BQ8NHM5 1336 aa13.14□□□□□ -0.31
SYNPO-202ENST00000394243 PNOCQ13519 176 aa13.14□□□□□ -0.31
SYNPO-202ENST00000394243 OTUD7BQ6GQQ9 843 aa13.14□□□□□ -0.31
SYNPO-202ENST00000394243 TRIM58Q8NG06 486 aa13.14□□□□□ -0.31
SYNPO-202ENST00000394243 RABGGTAQ92696 567 aa13.14□□□□□ -0.31
SYNPO-202ENST00000394243 POLKQ9UBT6 870 aa13.14□□□□□ -0.31
SYNPO-202ENST00000394243 NR1I2O75469 434 aa13.13□□□□□ -0.31
SYNPO-202ENST00000394243 SERPINB6P35237 376 aa13.13□□□□□ -0.31
SYNPO-202ENST00000394243 OTUD7AQ8TE49 926 aaPredicted RBP13.13□□□□□ -0.31
SYNPO-202ENST00000394243 RPGRQ92834 1020 aaKnown RBP13.13□□□□□ -0.31
SYNPO-202ENST00000394243 ATP8B1O43520 1251 aa13.13□□□□□ -0.31
SYNPO-202ENST00000394243 LETM2Q2VYF4 491 aa13.13□□□□□ -0.31
SYNPO-202ENST00000394243 CCDC197Q8NCU1 140 aa13.13□□□□□ -0.31
SYNPO-202ENST00000394243 DACT3Q96B18 629 aaPredicted RBP13.13□□□□□ -0.31
SYNPO-202ENST00000394243 GNA11P29992 359 aa13.13□□□□□ -0.31
SYNPO-202ENST00000394243 SPDYE3A6NKU9 549 aa13.13□□□□□ -0.31
SYNPO-202ENST00000394243 SFMBT2Q5VUG0 894 aa13.13□□□□□ -0.31
SYNPO-202ENST00000394243 MCTP2Q6DN12 878 aa13.13□□□□□ -0.31
SYNPO-202ENST00000394243 C2CD5Q86YS7 1000 aa13.13□□□□□ -0.31
SYNPO-202ENST00000394243 TEX11Q8IYF3 940 aa13.13□□□□□ -0.31
SYNPO-202ENST00000394243 PPP1R13BQ96KQ4 1090 aa13.13□□□□□ -0.31
SYNPO-202ENST00000394243 SLC24A3Q9HC58 644 aa13.13□□□□□ -0.31
SYNPO-202ENST00000394243 PRG4Q92954 1404 aaPredicted RBP13.13□□□□□ -0.31
SYNPO-202ENST00000394243 PPP2R5DQ14738 602 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 CYB5RLQ6IPT4 315 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 RRAGAQ7L523 313 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 BRD1O95696 1058 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 LMBR1LQ6UX01 489 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 USTQ9Y2C2 406 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 KCNK3O14649 394 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 NBPF6Q5VWK0 638 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 CCDC51Q96ER9 411 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 NBPF4Q96M43 638 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 THEGQ9P2T0 379 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 HYOU1Q9Y4L1 999 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 MAGEB6P1A0A0J9YX57 407 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms