RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 PRDM1O75626 825 aa15.49■□□□□ 0.07
CCDC3-202ENST00000378839 CDC25BP30305 580 aa15.49■□□□□ 0.07
CCDC3-202ENST00000378839 UBE4AQ14139 1066 aa15.49■□□□□ 0.07
CCDC3-202ENST00000378839 SLC10A5Q5PT55 438 aa15.49■□□□□ 0.07
CCDC3-202ENST00000378839 CRACR2BQ8N4Y2 399 aaPredicted RBP15.49■□□□□ 0.07
CCDC3-202ENST00000378839 RGS22Q8NE09 1264 aa15.49■□□□□ 0.07
CCDC3-202ENST00000378839 HSD3B7Q9H2F3 369 aa15.49■□□□□ 0.07
CCDC3-202ENST00000378839 TFCP2L1Q9NZI6 479 aa15.49■□□□□ 0.07
CCDC3-202ENST00000378839 ZNF831Q5JPB2 1677 aa15.49■□□□□ 0.07
CCDC3-202ENST00000378839 GOLGA6L19H0YKK7 550 aa15.48■□□□□ 0.07
CCDC3-202ENST00000378839 NR5A1Q13285 461 aa15.48■□□□□ 0.07
CCDC3-202ENST00000378839 NCAPHQ15003 741 aa15.48■□□□□ 0.07
CCDC3-202ENST00000378839 FOXP4Q8IVH2 680 aaPredicted RBP15.48■□□□□ 0.07
CCDC3-202ENST00000378839 C8orf37Q96NL8 207 aa15.48■□□□□ 0.07
CCDC3-202ENST00000378839 MMP1P03956 469 aa15.48■□□□□ 0.07
CCDC3-202ENST00000378839 TPM3P06753 285 aa15.48■□□□□ 0.07
CCDC3-202ENST00000378839 RTN1Q16799 776 aa15.48■□□□□ 0.07
CCDC3-202ENST00000378839 FBXO33Q7Z6M2 555 aa15.48■□□□□ 0.07
CCDC3-202ENST00000378839 ZNF654Q8IZM8 581 aa15.48■□□□□ 0.07
CCDC3-202ENST00000378839 ANAPC4Q9UJX5 808 aa15.48■□□□□ 0.07
CCDC3-202ENST00000378839 JAG2Q9Y219 1238 aa15.48■□□□□ 0.07
CCDC3-202ENST00000378839 hCG_1642624A0A1W2PR95 340 aa15.48■□□□□ 0.07
CCDC3-202ENST00000378839 FOXN1O15353 648 aa15.48■□□□□ 0.07
CCDC3-202ENST00000378839 PPP6R2O75170 966 aa15.48■□□□□ 0.07
CCDC3-202ENST00000378839 RESP18Q5W5W9 173 aa15.48■□□□□ 0.07
CCDC3-202ENST00000378839 FANCBQ8NB91 859 aa15.48■□□□□ 0.07
CCDC3-202ENST00000378839 MYRIPQ8NFW9 859 aa15.48■□□□□ 0.07
CCDC3-202ENST00000378839 MRFAP1L1Q96HT8 127 aa15.48■□□□□ 0.07
CCDC3-202ENST00000378839 CNTNAP4Q9C0A0 1308 aa15.48■□□□□ 0.07
CCDC3-202ENST00000378839 SLC3A2P08195 630 aaKnown RBP15.47■□□□□ 0.07
CCDC3-202ENST00000378839 TM4SF1P30408 202 aa15.47■□□□□ 0.07
CCDC3-202ENST00000378839 ENAHQ8N8S7 591 aaPredicted RBP15.47■□□□□ 0.07
CCDC3-202ENST00000378839 NUP133Q8WUM0 1156 aa15.47■□□□□ 0.07
CCDC3-202ENST00000378839 TNKSO95271 1327 aa15.47■□□□□ 0.07
CCDC3-202ENST00000378839 FAM205CA6NFA0 338 aa15.47■□□□□ 0.07
CCDC3-202ENST00000378839 PNOCQ13519 176 aa15.47■□□□□ 0.07
CCDC3-202ENST00000378839 LONRF3Q496Y0 759 aa15.47■□□□□ 0.07
CCDC3-202ENST00000378839 CPLX2Q6PUV4 134 aaKnown RBP15.47■□□□□ 0.07
CCDC3-202ENST00000378839 NOSTRINQ8IVI9 506 aa15.47■□□□□ 0.07
CCDC3-202ENST00000378839 CEP57L1Q8IYX8 460 aa15.47■□□□□ 0.07
CCDC3-202ENST00000378839 DUOX1Q9NRD9 1551 aa15.47■□□□□ 0.07
CCDC3-202ENST00000378839 FAM237AA0A1B0GTK4 181 aa15.46■□□□□ 0.07
CCDC3-202ENST00000378839 BECN2A8MW95 431 aa15.46■□□□□ 0.07
CCDC3-202ENST00000378839 EARS2Q5JPH6 523 aaKnown RBP15.46■□□□□ 0.07
CCDC3-202ENST00000378839 CTR9Q6PD62 1173 aa15.46■□□□□ 0.07
CCDC3-202ENST00000378839 LRRC8AQ8IWT6 810 aa15.46■□□□□ 0.07
CCDC3-202ENST00000378839 DIS3L2Q8IYB7 885 aaKnown RBP15.46■□□□□ 0.07
CCDC3-202ENST00000378839 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.46■□□□□ 0.07
CCDC3-202ENST00000378839 SYKP43405 635 aa15.46■□□□□ 0.07
CCDC3-202ENST00000378839 FUT2Q10981 343 aa15.46■□□□□ 0.07
CCDC3-202ENST00000378839 PKN1Q16512 942 aa15.46■□□□□ 0.07
CCDC3-202ENST00000378839 METTL16Q86W50 562 aaKnown RBP15.46■□□□□ 0.07
CCDC3-202ENST00000378839 NSUN4Q96CB9 384 aaKnown RBP15.46■□□□□ 0.07
CCDC3-202ENST00000378839 EP400Q96L91 3159 aa15.46■□□□□ 0.07
CCDC3-202ENST00000378839 MYH2Q9UKX2 1941 aa15.46■□□□□ 0.07
CCDC3-202ENST00000378839 USP27XA6NNY8 438 aa15.46■□□□□ 0.06
CCDC3-202ENST00000378839 NMT2O60551 498 aa15.46■□□□□ 0.06
CCDC3-202ENST00000378839 NLRP12P59046 1061 aa15.46■□□□□ 0.06
CCDC3-202ENST00000378839 MECOMQ03112 1051 aa15.46■□□□□ 0.06
CCDC3-202ENST00000378839 NARFQ9UHQ1 456 aa15.46■□□□□ 0.06
CCDC3-202ENST00000378839 PCDHB6Q9Y5E3 794 aa15.46■□□□□ 0.06
CCDC3-202ENST00000378839 IRS2Q9Y4H2 1338 aa15.45■□□□□ 0.06
CCDC3-202ENST00000378839 WNT7AO00755 349 aa15.45■□□□□ 0.06
CCDC3-202ENST00000378839 RPS8P62241 208 aaKnown RBP15.45■□□□□ 0.06
CCDC3-202ENST00000378839 GNL2Q13823 731 aaKnown RBP15.45■□□□□ 0.06
CCDC3-202ENST00000378839 CYP2D6P10635 497 aa15.45■□□□□ 0.06
CCDC3-202ENST00000378839 BMP6P22004 513 aa15.45■□□□□ 0.06
CCDC3-202ENST00000378839 PRDX5P30044 214 aa15.45■□□□□ 0.06
CCDC3-202ENST00000378839 VPS72Q15906 364 aa15.45■□□□□ 0.06
CCDC3-202ENST00000378839 NOM1Q5C9Z4 860 aaKnown RBP15.45■□□□□ 0.06
CCDC3-202ENST00000378839 FBXO41Q8TF61 875 aa15.45■□□□□ 0.06
CCDC3-202ENST00000378839 TUBE1Q9UJT0 475 aa15.45■□□□□ 0.06
CCDC3-202ENST00000378839 GNPATO15228 680 aa15.44■□□□□ 0.06
CCDC3-202ENST00000378839 PLEKHA8P1O95397 391 aa15.44■□□□□ 0.06
CCDC3-202ENST00000378839 TRIM29Q14134 588 aa15.44■□□□□ 0.06
CCDC3-202ENST00000378839 CAVIN4Q5BKX8 364 aa15.44■□□□□ 0.06
CCDC3-202ENST00000378839 COL24A1Q17RW2 1714 aa15.44■□□□□ 0.06
CCDC3-202ENST00000378839 TNRC6CQ9HCJ0 1690 aaKnown RBP15.44■□□□□ 0.06
CCDC3-202ENST00000378839 BTAF1O14981 1849 aa15.44■□□□□ 0.06
CCDC3-202ENST00000378839 ADAMTS3O15072 1205 aa15.44■□□□□ 0.06
CCDC3-202ENST00000378839 GTF2E1P29083 439 aaPredicted RBP15.44■□□□□ 0.06
CCDC3-202ENST00000378839 RBM6P78332 1123 aaKnown RBP15.44■□□□□ 0.06
CCDC3-202ENST00000378839 FILIP1Q7Z7B0 1213 aa15.44■□□□□ 0.06
CCDC3-202ENST00000378839 ZNF710Q8N1W2 664 aa15.44■□□□□ 0.06
CCDC3-202ENST00000378839 NGLY1Q96IV0 654 aa15.44■□□□□ 0.06
CCDC3-202ENST00000378839 ZSCAN10Q96SZ4 725 aaPredicted RBP15.44■□□□□ 0.06
CCDC3-202ENST00000378839 BPIFA3Q9BQP9 254 aa15.44■□□□□ 0.06
CCDC3-202ENST00000378839 FBXO2Q9UK22 296 aaPredicted RBP15.44■□□□□ 0.06
CCDC3-202ENST00000378839 USP17L12C9JPN9 530 aa15.44■□□□□ 0.06
CCDC3-202ENST00000378839 USP17L21D6R901 530 aa15.44■□□□□ 0.06
CCDC3-202ENST00000378839 RPS6KA4O75676 772 aa15.44■□□□□ 0.06
CCDC3-202ENST00000378839 FGRP09769 529 aa15.44■□□□□ 0.06
CCDC3-202ENST00000378839 ATP1A3P13637 1013 aa15.44■□□□□ 0.06
CCDC3-202ENST00000378839 CCZ1BP86790 482 aa15.44■□□□□ 0.06
CCDC3-202ENST00000378839 CCZ1P86791 482 aaPredicted RBP15.44■□□□□ 0.06
CCDC3-202ENST00000378839 MDM2Q00987 491 aaPredicted RBP15.44■□□□□ 0.06
CCDC3-202ENST00000378839 USP49Q70CQ1 688 aa15.44■□□□□ 0.06
CCDC3-202ENST00000378839 UBAC1Q9BSL1 405 aa15.44■□□□□ 0.06
CCDC3-202ENST00000378839 GNL3LQ9NVN8 582 aaKnown RBP15.44■□□□□ 0.06
CCDC3-202ENST00000378839 DYNC1I1O14576 645 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms