RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 TCP10Q12799 353 aa16.78■□□□□ 0.28
HMGA1-203ENST00000374116 NFIAQ12857 509 aa16.78■□□□□ 0.28
HMGA1-203ENST00000374116 ZMYM1Q5SVZ6 1142 aa16.78■□□□□ 0.28
HMGA1-203ENST00000374116 SLF2Q8IX21 1173 aa16.78■□□□□ 0.28
HMGA1-203ENST00000374116 GPT2Q8TD30 523 aa16.78■□□□□ 0.28
HMGA1-203ENST00000374116 OSBP2Q969R2 916 aa16.78■□□□□ 0.28
HMGA1-203ENST00000374116 MRIQ9BWK5 157 aa16.78■□□□□ 0.28
HMGA1-203ENST00000374116 GLIS2Q9BZE0 524 aaPredicted RBP16.78■□□□□ 0.28
HMGA1-203ENST00000374116 ALDH8A1Q9H2A2 487 aaPredicted RBP16.78■□□□□ 0.28
HMGA1-203ENST00000374116 HELLSQ9NRZ9 838 aa16.78■□□□□ 0.28
HMGA1-203ENST00000374116 LDHCP07864 332 aa16.77■□□□□ 0.28
HMGA1-203ENST00000374116 RHBDL3P58872 404 aa16.77■□□□□ 0.28
HMGA1-203ENST00000374116 PICALMQ13492 652 aa16.77■□□□□ 0.28
HMGA1-203ENST00000374116 ZSCAN23Q3MJ62 389 aa16.77■□□□□ 0.28
HMGA1-203ENST00000374116 CCDC129Q6ZRS4 1044 aa16.77■□□□□ 0.28
HMGA1-203ENST00000374116 LCORLQ8N3X6 602 aa16.77■□□□□ 0.28
HMGA1-203ENST00000374116 FAM163AQ96GL9 167 aaPredicted RBP16.77■□□□□ 0.28
HMGA1-203ENST00000374116 ARMT1Q9H993 441 aa16.77■□□□□ 0.28
HMGA1-203ENST00000374116 SMC3Q9UQE7 1217 aa16.77■□□□□ 0.28
HMGA1-203ENST00000374116 M0R2C6 588 aa16.77■□□□□ 0.27
HMGA1-203ENST00000374116 TRAF5O00463 557 aa16.77■□□□□ 0.27
HMGA1-203ENST00000374116 MYO1BO43795 1136 aa16.77■□□□□ 0.27
HMGA1-203ENST00000374116 SLC4A8Q2Y0W8 1093 aa16.77■□□□□ 0.27
HMGA1-203ENST00000374116 SPDYE2Q495Y8 402 aa16.77■□□□□ 0.27
HMGA1-203ENST00000374116 USP48Q86UV5 1035 aa16.77■□□□□ 0.27
HMGA1-203ENST00000374116 LDHDQ86WU2 507 aa16.77■□□□□ 0.27
HMGA1-203ENST00000374116 CDAN1Q8IWY9 1227 aa16.77■□□□□ 0.27
HMGA1-203ENST00000374116 TAF6LQ9Y6J9 622 aa16.77■□□□□ 0.27
HMGA1-203ENST00000374116 ECM29Q5VYK3 1845 aa16.77■□□□□ 0.27
HMGA1-203ENST00000374116 MBD4O95243 580 aa16.76■□□□□ 0.27
HMGA1-203ENST00000374116 COL9A3Q14050 684 aaPredicted RBP16.76■□□□□ 0.27
HMGA1-203ENST00000374116 ANKRD1Q15327 319 aa16.76■□□□□ 0.27
HMGA1-203ENST00000374116 ZFPM1Q8IX07 1006 aa16.76■□□□□ 0.27
HMGA1-203ENST00000374116 DCPSQ96C86 337 aaKnown RBP16.76■□□□□ 0.27
HMGA1-203ENST00000374116 RIOK1Q9BRS2 568 aaKnown RBP16.76■□□□□ 0.27
HMGA1-203ENST00000374116 DDX4Q9NQI0 724 aaKnown RBP16.76■□□□□ 0.27
HMGA1-203ENST00000374116 UQCRHLA0A096LP55 91 aa16.75■□□□□ 0.27
HMGA1-203ENST00000374116 MAGEB6P1A0A0J9YX57 407 aa16.75■□□□□ 0.27
HMGA1-203ENST00000374116 PRKAB2O43741 272 aa16.75■□□□□ 0.27
HMGA1-203ENST00000374116 UQCRHP07919 91 aa16.75■□□□□ 0.27
HMGA1-203ENST00000374116 KRT32Q14532 448 aa16.75■□□□□ 0.27
HMGA1-203ENST00000374116 UBE3CQ15386 1083 aa16.75■□□□□ 0.27
HMGA1-203ENST00000374116 BLOC1S2Q6QNY1 142 aa16.75■□□□□ 0.27
HMGA1-203ENST00000374116 KRT26Q7Z3Y9 468 aa16.75■□□□□ 0.27
HMGA1-203ENST00000374116 NOL10Q9BSC4 688 aaKnown RBP16.75■□□□□ 0.27
HMGA1-203ENST00000374116 U3KPZ7 1027 aaPredicted RBP16.75■□□□□ 0.27
HMGA1-203ENST00000374116 STX6O43752 255 aa16.75■□□□□ 0.27
HMGA1-203ENST00000374116 WDHD1O75717 1129 aaPredicted RBP16.75■□□□□ 0.27
HMGA1-203ENST00000374116 BAG3O95817 575 aa16.75■□□□□ 0.27
HMGA1-203ENST00000374116 ZSCAN22P10073 491 aaPredicted RBP16.75■□□□□ 0.27
HMGA1-203ENST00000374116 PDIA4P13667 645 aaKnown RBP16.75■□□□□ 0.27
HMGA1-203ENST00000374116 ZSCAN25Q6NSZ9 544 aa16.75■□□□□ 0.27
HMGA1-203ENST00000374116 TEX11Q8IYF3 940 aa16.75■□□□□ 0.27
HMGA1-203ENST00000374116 TGFBRAP1Q8WUH2 860 aa16.75■□□□□ 0.27
HMGA1-203ENST00000374116 SDR42E1Q8WUS8 393 aa16.75■□□□□ 0.27
HMGA1-203ENST00000374116 LARP6Q9BRS8 491 aaKnown RBP16.75■□□□□ 0.27
HMGA1-203ENST00000374116 TMEM39BQ9GZU3 492 aa16.75■□□□□ 0.27
HMGA1-203ENST00000374116 CDK5RAP2Q96SN8 1893 aa16.74■□□□□ 0.27
HMGA1-203ENST00000374116 LARGE1O95461 756 aa16.74■□□□□ 0.27
HMGA1-203ENST00000374116 SLURP2P0DP57 97 aa16.74■□□□□ 0.27
HMGA1-203ENST00000374116 SYT1P21579 422 aa16.74■□□□□ 0.27
HMGA1-203ENST00000374116 MMP14P50281 582 aa16.74■□□□□ 0.27
HMGA1-203ENST00000374116 DMTNQ08495 405 aa16.74■□□□□ 0.27
HMGA1-203ENST00000374116 CHADLQ6NUI6 762 aa16.74■□□□□ 0.27
HMGA1-203ENST00000374116 SASS6Q6UVJ0 657 aa16.74■□□□□ 0.27
HMGA1-203ENST00000374116 MAPKAPK5Q8IW41 473 aa16.74■□□□□ 0.27
HMGA1-203ENST00000374116 APPBP2Q92624 585 aa16.74■□□□□ 0.27
HMGA1-203ENST00000374116 AIDAQ96BJ3 306 aa16.74■□□□□ 0.27
HMGA1-203ENST00000374116 CHAMP1Q96JM3 812 aa16.74■□□□□ 0.27
HMGA1-203ENST00000374116 DSCC1Q9BVC3 393 aa16.74■□□□□ 0.27
HMGA1-203ENST00000374116 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.74■□□□□ 0.27
HMGA1-203ENST00000374116 FAM198AQ9UFP1 575 aa16.74■□□□□ 0.27
HMGA1-203ENST00000374116 PGAP2Q9UHJ9 254 aa16.74■□□□□ 0.27
HMGA1-203ENST00000374116 FZD1Q9UP38 647 aa16.74■□□□□ 0.27
HMGA1-203ENST00000374116 ZKSCAN5Q9Y2L8 839 aa16.74■□□□□ 0.27
HMGA1-203ENST00000374116 R3HCC1Q9Y3T6 440 aaKnown RBP16.74■□□□□ 0.27
HMGA1-203ENST00000374116 ATP6V1DQ9Y5K8 247 aa16.74■□□□□ 0.27
HMGA1-203ENST00000374116 TOMM70O94826 608 aa16.73■□□□□ 0.27
HMGA1-203ENST00000374116 RPS6KB1P23443 525 aa16.73■□□□□ 0.27
HMGA1-203ENST00000374116 RASA3Q14644 834 aa16.73■□□□□ 0.27
HMGA1-203ENST00000374116 CCDC83Q8IWF9 413 aa16.73■□□□□ 0.27
HMGA1-203ENST00000374116 SULF1Q8IWU6 871 aa16.73■□□□□ 0.27
HMGA1-203ENST00000374116 ZC3H15Q8WU90 426 aaKnown RBP16.73■□□□□ 0.27
HMGA1-203ENST00000374116 DEFB129Q9H1M3 183 aa16.73■□□□□ 0.27
HMGA1-203ENST00000374116 FAM13BQ9NYF5 915 aa16.73■□□□□ 0.27
HMGA1-203ENST00000374116 CNTNAP1P78357 1384 aa16.73■□□□□ 0.27
HMGA1-203ENST00000374116 ZFYP08048 801 aaPredicted RBP16.73■□□□□ 0.27
HMGA1-203ENST00000374116 ME3Q16798 604 aa16.73■□□□□ 0.27
HMGA1-203ENST00000374116 TMEM87AQ8NBN3 555 aa16.73■□□□□ 0.27
HMGA1-203ENST00000374116 CCDC94Q9BW85 323 aaPredicted RBP16.73■□□□□ 0.27
HMGA1-203ENST00000374116 ZNF408Q9H9D4 720 aa16.73■□□□□ 0.27
HMGA1-203ENST00000374116 TMOD2Q9NZR1 351 aa16.73■□□□□ 0.27
HMGA1-203ENST00000374116 GPAA1O43292 621 aa16.72■□□□□ 0.27
HMGA1-203ENST00000374116 CYP21A2P08686 494 aa16.72■□□□□ 0.27
HMGA1-203ENST00000374116 GJB2P29033 226 aa16.72■□□□□ 0.27
HMGA1-203ENST00000374116 PPP4CP60510 307 aa16.72■□□□□ 0.27
HMGA1-203ENST00000374116 EVX2Q03828 476 aa16.72■□□□□ 0.27
HMGA1-203ENST00000374116 ST3GAL1Q11201 340 aa16.72■□□□□ 0.27
HMGA1-203ENST00000374116 SAP30BPQ9UHR5 308 aaKnown RBP16.72■□□□□ 0.27
HMGA1-203ENST00000374116 TCHHQ07283 1943 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms