RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 C1orf141Q5JVX7 400 aa4.56□□□□□ -1.68
MCF2-202ENST00000370573 LDLRAD1Q5T700 205 aa4.56□□□□□ -1.68
MCF2-202ENST00000370573 MEX3CQ5U5Q3 659 aaKnown RBP4.56□□□□□ -1.68
MCF2-202ENST00000370573 IFNL2Q8IZJ0 200 aa4.56□□□□□ -1.68
MCF2-202ENST00000370573 STAG2Q8N3U4 1231 aa4.56□□□□□ -1.68
MCF2-202ENST00000370573 FBXO41Q8TF61 875 aa4.56□□□□□ -1.68
MCF2-202ENST00000370573 SPATA32Q96LK8 384 aa4.56□□□□□ -1.68
MCF2-202ENST00000370573 MKNK1Q9BUB5 465 aa4.56□□□□□ -1.68
MCF2-202ENST00000370573 BACH2Q9BYV9 841 aa4.56□□□□□ -1.68
MCF2-202ENST00000370573 QTRT2Q9H974 415 aaKnown RBP4.56□□□□□ -1.68
MCF2-202ENST00000370573 SEPT3Q9UH03 358 aa4.56□□□□□ -1.68
MCF2-202ENST00000370573 USP21Q9UK80 565 aa4.56□□□□□ -1.68
MCF2-202ENST00000370573 RCAN3Q9UKA8 241 aa4.56□□□□□ -1.68
MCF2-202ENST00000370573 AFF2P51816 1311 aa4.56□□□□□ -1.68
MCF2-202ENST00000370573 PLEKHG2Q9H7P9 1386 aa4.56□□□□□ -1.68
MCF2-202ENST00000370573 ICMTO60725 284 aa4.56□□□□□ -1.68
MCF2-202ENST00000370573 ARHGAP4P98171 946 aa4.56□□□□□ -1.68
MCF2-202ENST00000370573 TBC1D8BQ0IIM8 1120 aa4.56□□□□□ -1.68
MCF2-202ENST00000370573 TAF7Q15545 349 aaPredicted RBP4.56□□□□□ -1.68
MCF2-202ENST00000370573 CHSY3Q70JA7 882 aa4.56□□□□□ -1.68
MCF2-202ENST00000370573 TSPYL6Q8N831 410 aa4.56□□□□□ -1.68
MCF2-202ENST00000370573 C8orf58Q8NAV2 365 aa4.56□□□□□ -1.68
MCF2-202ENST00000370573 DDX54Q8TDD1 881 aaKnown RBP4.56□□□□□ -1.68
MCF2-202ENST00000370573 BHMTQ93088 406 aa4.56□□□□□ -1.68
MCF2-202ENST00000370573 USP20Q9Y2K6 914 aa4.56□□□□□ -1.68
MCF2-202ENST00000370573 RNF123Q5XPI4 1314 aa4.55□□□□□ -1.68
MCF2-202ENST00000370573 KDM6AO15550 1401 aaPredicted RBP4.55□□□□□ -1.68
MCF2-202ENST00000370573 SHANK3Q9BYB0 1731 aa4.55□□□□□ -1.68
MCF2-202ENST00000370573 KCNQ3O43525 872 aa4.55□□□□□ -1.68
MCF2-202ENST00000370573 HOXB4P17483 251 aaPredicted RBP4.55□□□□□ -1.68
MCF2-202ENST00000370573 MAPK1P28482 360 aa4.55□□□□□ -1.68
MCF2-202ENST00000370573 RTN1Q16799 776 aa4.55□□□□□ -1.68
MCF2-202ENST00000370573 KRT24Q2M2I5 525 aa4.55□□□□□ -1.68
MCF2-202ENST00000370573 SUV39H2Q9H5I1 410 aa4.55□□□□□ -1.68
MCF2-202ENST00000370573 CXXC1Q9P0U4 656 aaPredicted RBP4.55□□□□□ -1.68
MCF2-202ENST00000370573 LRFN2Q9ULH4 789 aa4.55□□□□□ -1.68
MCF2-202ENST00000370573 KCNH4Q9UQ05 1017 aa4.55□□□□□ -1.68
MCF2-202ENST00000370573 THRAP3Q9Y2W1 955 aaKnown RBP4.55□□□□□ -1.68
MCF2-202ENST00000370573 GPC6Q9Y625 555 aaPredicted RBP4.55□□□□□ -1.68
MCF2-202ENST00000370573 LRRC37A3O60309 1634 aa4.55□□□□□ -1.68
MCF2-202ENST00000370573 ADAMTS7Q9UKP4 1686 aa4.55□□□□□ -1.68
MCF2-202ENST00000370573 PARP4Q9UKK3 1724 aaKnown RBP4.55□□□□□ -1.68
MCF2-202ENST00000370573 EXOC5O00471 708 aa4.55□□□□□ -1.68
MCF2-202ENST00000370573 ELL2O00472 640 aaPredicted RBP4.55□□□□□ -1.68
MCF2-202ENST00000370573 VAMP4O75379 141 aa4.55□□□□□ -1.68
MCF2-202ENST00000370573 BCAR3O75815 825 aa4.55□□□□□ -1.68
MCF2-202ENST00000370573 RARSP54136 660 aaKnown RBP4.55□□□□□ -1.68
MCF2-202ENST00000370573 LAMC2Q13753 1193 aa4.55□□□□□ -1.68
MCF2-202ENST00000370573 GPAT2Q6NUI2 795 aa4.55□□□□□ -1.68
MCF2-202ENST00000370573 DCAF5Q96JK2 942 aa4.55□□□□□ -1.68
MCF2-202ENST00000370573 PCDH11XQ9BZA7 1347 aa4.55□□□□□ -1.68
MCF2-202ENST00000370573 PCDH11YQ9BZA8 1340 aa4.55□□□□□ -1.68
MCF2-202ENST00000370573 SLC52A2Q9HAB3 445 aa4.55□□□□□ -1.68
MCF2-202ENST00000370573 VIRMAQ69YN4 1812 aaKnown RBP4.54□□□□□ -1.68
MCF2-202ENST00000370573 ATRNO75882 1429 aa4.54□□□□□ -1.68
MCF2-202ENST00000370573 PHF20L1A8MW92 1017 aa4.54□□□□□ -1.68
MCF2-202ENST00000370573 NAA30Q147X3 362 aaPredicted RBP4.54□□□□□ -1.68
MCF2-202ENST00000370573 GIMAP6Q6P9H5 292 aa4.54□□□□□ -1.68
MCF2-202ENST00000370573 MARCH10Q8NA82 808 aaPredicted RBP4.54□□□□□ -1.68
MCF2-202ENST00000370573 ASB16Q96NS5 453 aa4.54□□□□□ -1.68
MCF2-202ENST00000370573 BABAM1Q9NWV8 329 aa4.54□□□□□ -1.68
MCF2-202ENST00000370573 TSPYL4Q9UJ04 414 aa4.54□□□□□ -1.68
MCF2-202ENST00000370573 MKL2Q9ULH7 1088 aa4.54□□□□□ -1.68
MCF2-202ENST00000370573 WNK3Q9BYP7 1800 aa4.54□□□□□ -1.68
MCF2-202ENST00000370573 SCN11AQ9UI33 1791 aa4.54□□□□□ -1.68
MCF2-202ENST00000370573 PLIN1O60240 522 aa4.54□□□□□ -1.68
MCF2-202ENST00000370573 HSP90AB1P08238 724 aaKnown RBP4.54□□□□□ -1.68
MCF2-202ENST00000370573 IRX6P78412 446 aaPredicted RBP4.54□□□□□ -1.68
MCF2-202ENST00000370573 HDLBPQ00341 1268 aaKnown RBP4.54□□□□□ -1.68
MCF2-202ENST00000370573 TEFQ10587 303 aa4.54□□□□□ -1.68
MCF2-202ENST00000370573 SLC39A6Q13433 755 aa4.54□□□□□ -1.68
MCF2-202ENST00000370573 KANK3Q6NY19 840 aa4.54□□□□□ -1.68
MCF2-202ENST00000370573 KRT25Q7Z3Z0 450 aa4.54□□□□□ -1.68
MCF2-202ENST00000370573 GTF3C2Q8WUA4 911 aaPredicted RBP4.54□□□□□ -1.68
MCF2-202ENST00000370573 SSH1Q8WYL5 1049 aa4.54□□□□□ -1.68
MCF2-202ENST00000370573 SAP130Q9H0E3 1048 aa4.54□□□□□ -1.68
MCF2-202ENST00000370573 EGFL7Q9UHF1 273 aa4.54□□□□□ -1.68
MCF2-202ENST00000370573 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.53□□□□□ -1.68
MCF2-202ENST00000370573 GLI3P10071 1580 aa4.53□□□□□ -1.68
MCF2-202ENST00000370573 SIPA1L3O60292 1781 aaPredicted RBP4.53□□□□□ -1.68
MCF2-202ENST00000370573 BTBD11A6QL63 1104 aa4.53□□□□□ -1.68
MCF2-202ENST00000370573 ERVV-2B6SEH9 535 aa4.53□□□□□ -1.68
MCF2-202ENST00000370573 TCERG1O14776 1098 aaKnown RBP4.53□□□□□ -1.68
MCF2-202ENST00000370573 CT47B1P0C2W7 299 aaPredicted RBP4.53□□□□□ -1.68
MCF2-202ENST00000370573 IDH3AP50213 366 aa4.53□□□□□ -1.68
MCF2-202ENST00000370573 RRP1P56182 461 aaKnown RBP4.53□□□□□ -1.68
MCF2-202ENST00000370573 EIF4A1P60842 406 aaKnown RBP4.53□□□□□ -1.68
MCF2-202ENST00000370573 DDB1Q16531 1140 aa4.53□□□□□ -1.68
MCF2-202ENST00000370573 TWISTNBQ3B726 338 aaPredicted RBP4.53□□□□□ -1.68
MCF2-202ENST00000370573 LINC00114Q6XXX2 140 aa4.53□□□□□ -1.68
MCF2-202ENST00000370573 C8orf86Q6ZUL3 223 aa4.53□□□□□ -1.68
MCF2-202ENST00000370573 GLYCTKQ8IVS8 523 aa4.53□□□□□ -1.68
MCF2-202ENST00000370573 UBXN4Q92575 508 aa4.53□□□□□ -1.68
MCF2-202ENST00000370573 DMGDHQ9UI17 866 aaKnown RBP4.53□□□□□ -1.68
MCF2-202ENST00000370573 TRPC5Q9UL62 973 aaPredicted RBP4.53□□□□□ -1.68
MCF2-202ENST00000370573 ELOA3CA0A087WX78 387 aaPredicted RBP4.53□□□□□ -1.68
MCF2-202ENST00000370573 ELOA3DA6NLF2 546 aaPredicted RBP4.53□□□□□ -1.68
MCF2-202ENST00000370573 TGFBR3LH3BV60 316 aa4.53□□□□□ -1.68
MCF2-202ENST00000370573 ALAS2P22557 587 aa4.53□□□□□ -1.68
MCF2-202ENST00000370573 COL8A1P27658 744 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms