RNA–Protein interactions for RNA: ENST00000367740.2

VAMP4-202, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VAMP4, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-202ENST00000367740 RGS3P49796 1198 aa18.48■□□□□ 0.55
VAMP4-202ENST00000367740 CACNB2Q08289 660 aaPredicted RBP18.48■□□□□ 0.55
VAMP4-202ENST00000367740 SHHQ15465 462 aa18.47■□□□□ 0.55
VAMP4-202ENST00000367740 C9orf50Q5SZB4 431 aa18.47■□□□□ 0.55
VAMP4-202ENST00000367740 WDR66Q8TBY9 1149 aa18.47■□□□□ 0.55
VAMP4-202ENST00000367740 SUCLG2Q96I99 432 aa18.47■□□□□ 0.55
VAMP4-202ENST00000367740 RLFQ13129 1914 aa18.47■□□□□ 0.55
VAMP4-202ENST00000367740 XRCC5P13010 732 aaKnown RBP18.46■□□□□ 0.55
VAMP4-202ENST00000367740 USP38Q8NB14 1042 aa18.46■□□□□ 0.55
VAMP4-202ENST00000367740 IDI2Q9BXS1 227 aa18.46■□□□□ 0.55
VAMP4-202ENST00000367740 ASCC2Q9H1I8 757 aaPredicted RBP18.46■□□□□ 0.55
VAMP4-202ENST00000367740 C9orf78Q9NZ63 289 aaPredicted RBP18.46■□□□□ 0.55
VAMP4-202ENST00000367740 MORF4L1Q9UBU8 362 aa18.46■□□□□ 0.55
VAMP4-202ENST00000367740 BDP1A6H8Y1 2624 aa18.46■□□□□ 0.55
VAMP4-202ENST00000367740 DDTLA6NHG4 134 aaPredicted RBP18.45■□□□□ 0.54
VAMP4-202ENST00000367740 ENTPD3O75355 529 aa18.45■□□□□ 0.54
VAMP4-202ENST00000367740 ZKSCAN1P17029 563 aaPredicted RBP18.45■□□□□ 0.54
VAMP4-202ENST00000367740 FGFR2P21802 821 aa18.45■□□□□ 0.54
VAMP4-202ENST00000367740 SMAD3P84022 425 aaKnown RBP18.45■□□□□ 0.54
VAMP4-202ENST00000367740 SOCS4Q8WXH5 440 aa18.45■□□□□ 0.54
VAMP4-202ENST00000367740 FAM122AQ96E09 287 aa18.45■□□□□ 0.54
VAMP4-202ENST00000367740 ZSCAN29Q8IWY8 852 aaPredicted RBP18.44■□□□□ 0.54
VAMP4-202ENST00000367740 NUDT12Q9BQG2 462 aa18.44■□□□□ 0.54
VAMP4-202ENST00000367740 SENP6Q9GZR1 1112 aaPredicted RBP18.44■□□□□ 0.54
VAMP4-202ENST00000367740 TMEM265A0A087WTH1 108 aa18.43■□□□□ 0.54
VAMP4-202ENST00000367740 PEX10O60683 326 aa18.43■□□□□ 0.54
VAMP4-202ENST00000367740 ZEB1P37275 1124 aaPredicted RBP18.43■□□□□ 0.54
VAMP4-202ENST00000367740 HMGCS2P54868 508 aa18.43■□□□□ 0.54
VAMP4-202ENST00000367740 SPP2Q13103 211 aa18.43■□□□□ 0.54
VAMP4-202ENST00000367740 PABPC4Q13310 644 aaKnown RBP eCLIP18.43■□□□□ 0.54
VAMP4-202ENST00000367740 PUM3Q15397 648 aaKnown RBP18.43■□□□□ 0.54
VAMP4-202ENST00000367740 CCL14Q16627 93 aa18.43■□□□□ 0.54
VAMP4-202ENST00000367740 TRMT44Q8IYL2 757 aaKnown RBP18.43■□□□□ 0.54
VAMP4-202ENST00000367740 IFIT1P09914 478 aaKnown RBP18.42■□□□□ 0.54
VAMP4-202ENST00000367740 ATN1P54259 1190 aaPredicted RBP18.42■□□□□ 0.54
VAMP4-202ENST00000367740 USP6NLQ92738 828 aa18.42■□□□□ 0.54
VAMP4-202ENST00000367740 BICC1Q9H694 974 aaKnown RBP18.42■□□□□ 0.54
VAMP4-202ENST00000367740 DDX4Q9NQI0 724 aaKnown RBP18.42■□□□□ 0.54
VAMP4-202ENST00000367740 PRKAG2Q9UGJ0 569 aa18.42■□□□□ 0.54
VAMP4-202ENST00000367740 LDHBP07195 334 aaKnown RBP18.41■□□□□ 0.54
VAMP4-202ENST00000367740 RTP1P59025 263 aa18.41■□□□□ 0.54
VAMP4-202ENST00000367740 RABL6Q3YEC7 729 aaPredicted RBP18.41■□□□□ 0.54
VAMP4-202ENST00000367740 ZNF280CQ8ND82 737 aa18.41■□□□□ 0.54
VAMP4-202ENST00000367740 TXNRD2Q9NNW7 524 aa18.41■□□□□ 0.54
VAMP4-202ENST00000367740 NCOR1O75376 2440 aa18.4■□□□□ 0.54
VAMP4-202ENST00000367740 FAM196BA6NMK8 535 aa18.4■□□□□ 0.54
VAMP4-202ENST00000367740 ABCB7O75027 752 aa18.4■□□□□ 0.54
VAMP4-202ENST00000367740 ALDH1L1O75891 902 aa18.4■□□□□ 0.54
VAMP4-202ENST00000367740 NBPF7P0C2Y1 421 aaPredicted RBP18.4■□□□□ 0.54
VAMP4-202ENST00000367740 ANKRD44Q8N8A2 993 aa18.4■□□□□ 0.54
VAMP4-202ENST00000367740 KLHDC4Q8TBB5 520 aa18.4■□□□□ 0.54
VAMP4-202ENST00000367740 GAKO14976 1311 aa18.4■□□□□ 0.54
VAMP4-202ENST00000367740 VAMP4O75379 141 aa18.39■□□□□ 0.53
VAMP4-202ENST00000367740 PDE3AQ14432 1141 aa18.39■□□□□ 0.53
VAMP4-202ENST00000367740 SH3D19Q5HYK7 790 aa18.39■□□□□ 0.53
VAMP4-202ENST00000367740 APBA2Q99767 749 aa18.39■□□□□ 0.53
VAMP4-202ENST00000367740 SALL1Q9NSC2 1324 aa18.39■□□□□ 0.53
VAMP4-202ENST00000367740 FANCIQ9NVI1 1328 aa18.39■□□□□ 0.53
VAMP4-202ENST00000367740 XIRP2A4UGR9 3374 aa18.39■□□□□ 0.53
VAMP4-202ENST00000367740 RGS2P41220 211 aa18.38■□□□□ 0.53
VAMP4-202ENST00000367740 MAP3K12Q12852 859 aa18.38■□□□□ 0.53
VAMP4-202ENST00000367740 PICALMQ13492 652 aa18.38■□□□□ 0.53
VAMP4-202ENST00000367740 MORN1Q5T089 497 aa18.38■□□□□ 0.53
VAMP4-202ENST00000367740 SRCIN1Q9C0H9 1055 aa18.38■□□□□ 0.53
VAMP4-202ENST00000367740 OSBPL5Q9H0X9 879 aaPredicted RBP18.38■□□□□ 0.53
VAMP4-202ENST00000367740 ATP11BQ9Y2G3 1177 aa18.38■□□□□ 0.53
VAMP4-202ENST00000367740 UTYO14607 1347 aa18.38■□□□□ 0.53
VAMP4-202ENST00000367740 SIPA1L1O43166 1804 aa18.37■□□□□ 0.53
VAMP4-202ENST00000367740 TBC1D12O60347 775 aa18.37■□□□□ 0.53
VAMP4-202ENST00000367740 SLC5A1P13866 664 aa18.37■□□□□ 0.53
VAMP4-202ENST00000367740 MAPK4P31152 587 aa18.37■□□□□ 0.53
VAMP4-202ENST00000367740 IRX3P78415 501 aaPredicted RBP18.37■□□□□ 0.53
VAMP4-202ENST00000367740 CCDC27Q2M243 656 aa18.37■□□□□ 0.53
VAMP4-202ENST00000367740 GPR142Q7Z601 462 aa18.37■□□□□ 0.53
VAMP4-202ENST00000367740 WWC1Q8IX03 1113 aa18.37■□□□□ 0.53
VAMP4-202ENST00000367740 GPRC5AQ8NFJ5 357 aa18.37■□□□□ 0.53
VAMP4-202ENST00000367740 BADQ92934 168 aa18.37■□□□□ 0.53
VAMP4-202ENST00000367740 TBC1D2Q9BYX2 928 aa18.37■□□□□ 0.53
VAMP4-202ENST00000367740 PORCNQ9H237 461 aa18.37■□□□□ 0.53
VAMP4-202ENST00000367740 REV3LO60673 3130 aa18.37■□□□□ 0.53
VAMP4-202ENST00000367740 DNM1LO00429 736 aa18.36■□□□□ 0.53
VAMP4-202ENST00000367740 HERVK_113P62684 666 aa18.36■□□□□ 0.53
VAMP4-202ENST00000367740 IL16Q14005 1332 aa18.36■□□□□ 0.53
VAMP4-202ENST00000367740 RRP1BQ14684 758 aaKnown RBP18.36■□□□□ 0.53
VAMP4-202ENST00000367740 GRIN2CQ14957 1233 aa18.36■□□□□ 0.53
VAMP4-202ENST00000367740 CHD9Q3L8U1 2897 aa18.36■□□□□ 0.53
VAMP4-202ENST00000367740 LPIN2Q92539 896 aa18.36■□□□□ 0.53
VAMP4-202ENST00000367740 P2RX7Q99572 595 aaKnown RBP18.36■□□□□ 0.53
VAMP4-202ENST00000367740 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.36■□□□□ 0.53
VAMP4-202ENST00000367740 PRDM5Q9NQX1 630 aaPredicted RBP18.36■□□□□ 0.53
VAMP4-202ENST00000367740 DDX20Q9UHI6 824 aaKnown RBP18.36■□□□□ 0.53
VAMP4-202ENST00000367740 SLC4A10Q6U841 1118 aa18.35■□□□□ 0.53
VAMP4-202ENST00000367740 LPAR1Q92633 364 aa18.35■□□□□ 0.53
VAMP4-202ENST00000367740 FLRT1Q9NZU1 646 aa18.35■□□□□ 0.53
VAMP4-202ENST00000367740 RBPJLQ9UBG7 517 aa18.35■□□□□ 0.53
VAMP4-202ENST00000367740 USP17L5A8MUK1 530 aa18.34■□□□□ 0.53
VAMP4-202ENST00000367740 HOXA7P31268 230 aaPredicted RBP18.34■□□□□ 0.53
VAMP4-202ENST00000367740 CAP2P40123 477 aa18.34■□□□□ 0.53
VAMP4-202ENST00000367740 ERVK-9P63128 1117 aa18.34■□□□□ 0.53
VAMP4-202ENST00000367740 ERVK-24P63145 666 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms