RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 MYH9P35579 1960 aaKnown RBP8.12□□□□□ -1.11
SYNE1-208ENST00000367256 RNF113AO15541 343 aaKnown RBP8.11□□□□□ -1.11
SYNE1-208ENST00000367256 TRIM68Q6AZZ1 485 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 CCDC125Q86Z20 511 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 GOLGA5Q8TBA6 731 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 TRIM31Q9BZY9 425 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 MGEA5O60502 916 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 HARSP12081 509 aaKnown RBP8.11□□□□□ -1.11
SYNE1-208ENST00000367256 PTPDC1A2A3K4 754 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 CASC4Q6P4E1 433 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 WHAMMQ8TF30 809 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 ATP2A3Q93084 1043 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 IBTKQ9P2D0 1353 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-208ENST00000367256 WASLO00401 505 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-208ENST00000367256 SP4Q02446 784 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 APOBRQ0VD83 1088 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 FNBP1Q96RU3 617 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 PARP2Q9UGN5 583 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 TBC1D8O95759 1140 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 VEZTQ9HBM0 779 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 IQSEC3Q9UPP2 1182 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-208ENST00000367256 WDR46O15213 610 aaKnown RBP8.11□□□□□ -1.11
SYNE1-208ENST00000367256 PPP2R5BQ15173 497 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 ZKSCAN3Q9BRR0 538 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 KIF24Q5T7B8 1368 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 CUTAO60888 179 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 U2AF2P26368 475 aaKnown RBP eCLIP8.11□□□□□ -1.11
SYNE1-208ENST00000367256 PPP2R5DQ14738 602 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 ZSCAN26Q16670 478 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 VSIG1Q86XK7 387 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 ADAMTS2O95450 1211 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 CREB3L3Q68CJ9 461 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 TPX2Q9ULW0 747 aaKnown RBP8.11□□□□□ -1.11
SYNE1-208ENST00000367256 AK2P54819 239 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 COG7P83436 770 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 CFAP221Q4G0U5 840 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 ANKRD13DQ6ZTN6 518 aa8.11□□□□□ -1.11
SYNE1-208ENST00000367256 CCDC84Q86UT8 332 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-208ENST00000367256 JARID2Q92833 1246 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-208ENST00000367256 PHLDB3Q6NSJ2 640 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 LARSQ9P2J5 1176 aaKnown RBP8.1□□□□□ -1.11
SYNE1-208ENST00000367256 STK38LQ9Y2H1 464 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 NOS1P29475 1434 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 PLEKHM2Q8IWE5 1019 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 MRPL50Q8N5N7 158 aaKnown RBP8.1□□□□□ -1.11
SYNE1-208ENST00000367256 DDX21Q9NR30 783 aaKnown RBP eCLIP8.1□□□□□ -1.11
SYNE1-208ENST00000367256 ZBTB40Q9NUA8 1239 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 EXOC7Q9UPT5 735 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 AFG3L2Q9Y4W6 797 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 TRIM4Q9C037 500 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 Q9H521 79 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 FAM83GA6ND36 823 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 GRM8O00222 908 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 SESN3P58005 492 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 LONRF3Q496Y0 759 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 WAPLQ7Z5K2 1190 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-208ENST00000367256 SHANK2Q9UPX8 1470 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 IGSF3O75054 1194 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 DIXDC1Q155Q3 683 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 RBSNQ9H1K0 784 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 MCM9Q9NXL9 1143 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 PLXNC1O60486 1568 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 SBNO2Q9Y2G9 1366 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 TNFAIP3P21580 790 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 STRN3Q13033 797 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 LGSNQ5TDP6 509 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 MGARPQ8TDB4 240 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 GCC2Q8IWJ2 1684 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 OAS2P29728 719 aaKnown RBP8.1□□□□□ -1.11
SYNE1-208ENST00000367256 CCDC105Q8IYK2 499 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 FAM71BQ8TC56 605 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 RAB17Q9H0T7 212 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 XAB2Q9HCS7 855 aaKnown RBP8.1□□□□□ -1.11
SYNE1-208ENST00000367256 FLOT1O75955 427 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 KRT3P12035 628 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 CHMLP26374 656 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 CABS1Q96KC9 395 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 HAUS8Q9BT25 410 aa8.1□□□□□ -1.11
SYNE1-208ENST00000367256 GOLGA8KD6RF30 607 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 PPP2R5CQ13362 524 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 HAUS3Q68CZ6 603 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 CHST3Q7LGC8 479 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 CERS3Q8IU89 383 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 CDAN1Q8IWY9 1227 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 VPS37BQ9H9H4 285 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 ABCC1P33527 1531 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 SETDB2Q96T68 719 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 RABEP2Q9H5N1 569 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 FAN1Q9Y2M0 1017 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 EFCAB8A8MWE9 144 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 EVI5O60447 810 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 KRT15P19012 456 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 PAK1Q13153 545 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 IFNL2Q8IZJ0 200 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 THEGQ9P2T0 379 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 ARHGAP42A6NI28 874 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 EXOC5O00471 708 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 OPHN1O60890 802 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 RAD51AP2Q09MP3 1159 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms