RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 SPC25Q9HBM1 224 aa13.08□□□□□ -0.32
SYNE1-204ENST00000367248 R3HDM1Q15032 1099 aaKnown RBP13.08□□□□□ -0.32
SYNE1-204ENST00000367248 ALAS1P13196 640 aa13.07□□□□□ -0.32
SYNE1-204ENST00000367248 FAM160A1Q05DH4 1040 aa13.07□□□□□ -0.32
SYNE1-204ENST00000367248 LMAN1P49257 510 aa13.07□□□□□ -0.32
SYNE1-204ENST00000367248 ADCY7P51828 1080 aa13.07□□□□□ -0.32
SYNE1-204ENST00000367248 ANO1Q5XXA6 986 aa13.07□□□□□ -0.32
SYNE1-204ENST00000367248 KRT25Q7Z3Z0 450 aa13.07□□□□□ -0.32
SYNE1-204ENST00000367248 IFNL3Q8IZI9 196 aa13.07□□□□□ -0.32
SYNE1-204ENST00000367248 CDK12Q9NYV4 1490 aaPredicted RBP13.07□□□□□ -0.32
SYNE1-204ENST00000367248 UBE3CQ15386 1083 aa13.07□□□□□ -0.32
SYNE1-204ENST00000367248 DBNLQ9UJU6 430 aaKnown RBP13.07□□□□□ -0.32
SYNE1-204ENST00000367248 TYRO3Q06418 890 aa13.07□□□□□ -0.32
SYNE1-204ENST00000367248 AXIN2Q9Y2T1 843 aa13.07□□□□□ -0.32
SYNE1-204ENST00000367248 PALLDQ8WX93 1383 aa13.07□□□□□ -0.32
SYNE1-204ENST00000367248 GSPT1P15170 499 aaKnown RBP13.06□□□□□ -0.32
SYNE1-204ENST00000367248 SEC62Q99442 399 aaKnown RBP13.06□□□□□ -0.32
SYNE1-204ENST00000367248 AZI2Q9H6S1 392 aa13.06□□□□□ -0.32
SYNE1-204ENST00000367248 LEMD3Q9Y2U8 911 aa13.06□□□□□ -0.32
SYNE1-204ENST00000367248 UQCRHLA0A096LP55 91 aa13.06□□□□□ -0.32
SYNE1-204ENST00000367248 BICDL2A1A5D9 508 aa13.06□□□□□ -0.32
SYNE1-204ENST00000367248 UQCRHP07919 91 aa13.06□□□□□ -0.32
SYNE1-204ENST00000367248 STX17P56962 302 aa13.06□□□□□ -0.32
SYNE1-204ENST00000367248 NLRP10Q86W26 655 aa13.06□□□□□ -0.32
SYNE1-204ENST00000367248 SEMA3EO15041 775 aa13.06□□□□□ -0.32
SYNE1-204ENST00000367248 BBOX1O75936 387 aa13.06□□□□□ -0.32
SYNE1-204ENST00000367248 CASQ1P31415 396 aa13.06□□□□□ -0.32
SYNE1-204ENST00000367248 GLG1Q92896 1179 aa13.06□□□□□ -0.32
SYNE1-204ENST00000367248 C16orf45Q96MC5 204 aaPredicted RBP13.06□□□□□ -0.32
SYNE1-204ENST00000367248 CHD1O14646 1710 aa13.06□□□□□ -0.32
SYNE1-204ENST00000367248 FAM173BQ6P4H8 233 aa13.06□□□□□ -0.32
SYNE1-204ENST00000367248 SEC31BQ9NQW1 1179 aa13.06□□□□□ -0.32
SYNE1-204ENST00000367248 SV2BQ7L1I2 683 aa13.06□□□□□ -0.32
SYNE1-204ENST00000367248 METTL13Q8N6R0 699 aa13.06□□□□□ -0.32
SYNE1-204ENST00000367248 TESPA1A2RU30 521 aaPredicted RBP13.05□□□□□ -0.32
SYNE1-204ENST00000367248 BTDP43251 543 aa13.05□□□□□ -0.32
SYNE1-204ENST00000367248 Q3C1V9 767 aa13.05□□□□□ -0.32
SYNE1-204ENST00000367248 SPICE1Q8N0Z3 855 aa13.05□□□□□ -0.32
SYNE1-204ENST00000367248 FRMPD2Q68DX3 1309 aaPredicted RBP13.05□□□□□ -0.32
SYNE1-204ENST00000367248 A0A1B0GVL5 298 aa13.05□□□□□ -0.32
SYNE1-204ENST00000367248 HSPD1P10809 573 aaKnown RBP13.05□□□□□ -0.32
SYNE1-204ENST00000367248 TTC38Q5R3I4 469 aa13.05□□□□□ -0.32
SYNE1-204ENST00000367248 TBC1D5Q92609 795 aa13.05□□□□□ -0.32
SYNE1-204ENST00000367248 FAM170AA1A519 330 aa13.05□□□□□ -0.32
SYNE1-204ENST00000367248 M0QZ92 97 aa13.05□□□□□ -0.32
SYNE1-204ENST00000367248 CYLC1P35663 651 aaPredicted RBP13.05□□□□□ -0.32
SYNE1-204ENST00000367248 CCT6AP40227 531 aaKnown RBP13.05□□□□□ -0.32
SYNE1-204ENST00000367248 RBM10P98175 930 aaKnown RBP13.05□□□□□ -0.32
SYNE1-204ENST00000367248 RAD51AP2Q09MP3 1159 aa13.05□□□□□ -0.32
SYNE1-204ENST00000367248 HAUS3Q68CZ6 603 aa13.05□□□□□ -0.32
SYNE1-204ENST00000367248 ELP1O95163 1332 aa13.05□□□□□ -0.32
SYNE1-204ENST00000367248 LPXNO60711 386 aa13.05□□□□□ -0.32
SYNE1-204ENST00000367248 ARID4AP29374 1257 aaPredicted RBP13.05□□□□□ -0.32
SYNE1-204ENST00000367248 MRPS9P82933 396 aaKnown RBP13.05□□□□□ -0.32
SYNE1-204ENST00000367248 NCAPH2Q6IBW4 605 aa13.05□□□□□ -0.32
SYNE1-204ENST00000367248 SDR42E1Q8WUS8 393 aa13.05□□□□□ -0.32
SYNE1-204ENST00000367248 CRACR2AQ9BSW2 395 aa13.05□□□□□ -0.32
SYNE1-204ENST00000367248 BIRC3Q13489 604 aa13.05□□□□□ -0.32
SYNE1-204ENST00000367248 PHKBQ93100 1093 aa13.05□□□□□ -0.32
SYNE1-204ENST00000367248 CCNT1O60563 726 aaKnown RBP13.05□□□□□ -0.32
SYNE1-204ENST00000367248 MIGA2Q7L4E1 593 aa13.05□□□□□ -0.32
SYNE1-204ENST00000367248 ZNF654Q8IZM8 581 aa13.05□□□□□ -0.32
SYNE1-204ENST00000367248 EHBP1Q8NDI1 1231 aa13.05□□□□□ -0.32
SYNE1-204ENST00000367248 ZMYND15Q9H091 742 aa13.05□□□□□ -0.32
SYNE1-204ENST00000367248 CCDC186Q7Z3E2 898 aa13.04□□□□□ -0.32
SYNE1-204ENST00000367248 DPP9Q86TI2 863 aa13.04□□□□□ -0.32
SYNE1-204ENST00000367248 ANKRD35Q8N283 1001 aa13.04□□□□□ -0.32
SYNE1-204ENST00000367248 CCDC102AQ96A19 550 aa13.04□□□□□ -0.32
SYNE1-204ENST00000367248 AS3MTQ9HBK9 375 aa13.04□□□□□ -0.32
SYNE1-204ENST00000367248 STAP2Q9UGK3 403 aa13.04□□□□□ -0.32
SYNE1-204ENST00000367248 TMEM110-MUSTN1A8MSY1 372 aa13.04□□□□□ -0.32
SYNE1-204ENST00000367248 DCAF15Q66K64 600 aa13.04□□□□□ -0.32
SYNE1-204ENST00000367248 TMCO3Q6UWJ1 677 aa13.04□□□□□ -0.32
SYNE1-204ENST00000367248 HOOK3Q86VS8 718 aa13.04□□□□□ -0.32
SYNE1-204ENST00000367248 LRRC47Q8N1G4 583 aaKnown RBP13.04□□□□□ -0.32
SYNE1-204ENST00000367248 ANO3Q9BYT9 981 aa13.04□□□□□ -0.32
SYNE1-204ENST00000367248 ATG3Q9NT62 314 aa13.04□□□□□ -0.32
SYNE1-204ENST00000367248 LRWD1Q9UFC0 647 aa13.04□□□□□ -0.32
SYNE1-204ENST00000367248 TXKP42681 527 aa13.04□□□□□ -0.32
SYNE1-204ENST00000367248 OTUD6BQ8N6M0 293 aa13.04□□□□□ -0.32
SYNE1-204ENST00000367248 KDM5AP29375 1690 aaKnown RBP13.04□□□□□ -0.32
SYNE1-204ENST00000367248 FLOT1O75955 427 aa13.04□□□□□ -0.32
SYNE1-204ENST00000367248 GNG11P61952 73 aa13.04□□□□□ -0.32
SYNE1-204ENST00000367248 PTH1RQ03431 593 aa13.04□□□□□ -0.32
SYNE1-204ENST00000367248 RBM6P78332 1123 aaKnown RBP13.04□□□□□ -0.32
SYNE1-204ENST00000367248 SMIM5Q71RC9 77 aa13.04□□□□□ -0.32
SYNE1-204ENST00000367248 RPS6KA4O75676 772 aa13.03□□□□□ -0.32
SYNE1-204ENST00000367248 RPL13P26373 211 aaKnown RBP13.03□□□□□ -0.32
SYNE1-204ENST00000367248 ADORA1P30542 326 aa13.03□□□□□ -0.32
SYNE1-204ENST00000367248 ARL1P40616 181 aaPredicted RBP13.03□□□□□ -0.32
SYNE1-204ENST00000367248 CHURC1Q8WUH1 139 aa13.03□□□□□ -0.32
SYNE1-204ENST00000367248 KCNH3Q9ULD8 1083 aa13.03□□□□□ -0.32
SYNE1-204ENST00000367248 PABPN1LA6NDY0 278 aaKnown RBP13.03□□□□□ -0.32
SYNE1-204ENST00000367248 ZRSR2Q15696 482 aaKnown RBP13.03□□□□□ -0.32
SYNE1-204ENST00000367248 CCDC65Q8IXS2 484 aa13.03□□□□□ -0.32
SYNE1-204ENST00000367248 MLXIPQ9HAP2 919 aa13.03□□□□□ -0.32
SYNE1-204ENST00000367248 RNF181Q9P0P0 153 aa13.03□□□□□ -0.32
SYNE1-204ENST00000367248 H0YHG0 523 aa13.03□□□□□ -0.32
SYNE1-204ENST00000367248 SNW1Q13573 536 aaKnown RBP13.03□□□□□ -0.32
SYNE1-204ENST00000367248 TSPYL1Q9H0U9 437 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms