RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 SERPINB13Q9UIV8 391 aa10.73□□□□□ -0.69
UPF2-202ENST00000357604 UBR3Q6ZT12 1888 aa10.73□□□□□ -0.69
UPF2-202ENST00000357604 TMEM88BA6NKF7 163 aa10.73□□□□□ -0.69
UPF2-202ENST00000357604 HUNKP57058 714 aa10.73□□□□□ -0.69
UPF2-202ENST00000357604 ICA1Q05084 483 aa10.73□□□□□ -0.69
UPF2-202ENST00000357604 TMEM179Q6ZVK1 233 aa10.73□□□□□ -0.69
UPF2-202ENST00000357604 AMIGO3Q86WK7 504 aa10.73□□□□□ -0.69
UPF2-202ENST00000357604 SH3RF3Q8TEJ3 882 aaPredicted RBP10.73□□□□□ -0.69
UPF2-202ENST00000357604 KANSL2Q9H9L4 492 aa10.73□□□□□ -0.69
UPF2-202ENST00000357604 TLR7Q9NYK1 1049 aaKnown RBP10.73□□□□□ -0.69
UPF2-202ENST00000357604 ZNF541Q9H0D2 1346 aa10.73□□□□□ -0.69
UPF2-202ENST00000357604 ZNF76P36508 570 aa10.73□□□□□ -0.69
UPF2-202ENST00000357604 NOL8Q76FK4 1167 aaKnown RBP10.73□□□□□ -0.69
UPF2-202ENST00000357604 CHMLP26374 656 aa10.73□□□□□ -0.69
UPF2-202ENST00000357604 SSRP1Q08945 709 aaKnown RBP10.73□□□□□ -0.69
UPF2-202ENST00000357604 PPP2R5BQ15173 497 aa10.73□□□□□ -0.69
UPF2-202ENST00000357604 DIXDC1Q155Q3 683 aa10.73□□□□□ -0.69
UPF2-202ENST00000357604 NSUN4Q96CB9 384 aaKnown RBP10.73□□□□□ -0.69
UPF2-202ENST00000357604 NOL7Q9UMY1 257 aaKnown RBP10.73□□□□□ -0.69
UPF2-202ENST00000357604 VIRMAQ69YN4 1812 aaKnown RBP10.73□□□□□ -0.69
UPF2-202ENST00000357604 TOMM70O94826 608 aa10.72□□□□□ -0.69
UPF2-202ENST00000357604 CASTP20810 708 aaKnown RBP10.72□□□□□ -0.69
UPF2-202ENST00000357604 PTMSP20962 102 aa10.72□□□□□ -0.69
UPF2-202ENST00000357604 SAMD7Q7Z3H4 446 aa10.72□□□□□ -0.69
UPF2-202ENST00000357604 CCDC148Q8NFR7 591 aa10.72□□□□□ -0.69
UPF2-202ENST00000357604 RASSF8Q8NHQ8 419 aa10.72□□□□□ -0.69
UPF2-202ENST00000357604 PARK7Q99497 189 aaKnown RBP10.72□□□□□ -0.69
UPF2-202ENST00000357604 SMC3Q9UQE7 1217 aa10.72□□□□□ -0.69
UPF2-202ENST00000357604 OLFM4Q6UX06 510 aa10.72□□□□□ -0.69
UPF2-202ENST00000357604 TAF1DQ9H5J8 278 aaPredicted RBP10.72□□□□□ -0.69
UPF2-202ENST00000357604 C19orf81C9J6K1 198 aa10.72□□□□□ -0.69
UPF2-202ENST00000357604 NFKBIEO00221 500 aa10.72□□□□□ -0.69
UPF2-202ENST00000357604 PDE4AP27815 886 aa10.72□□□□□ -0.69
UPF2-202ENST00000357604 ANAPC15P60006 121 aa10.72□□□□□ -0.69
UPF2-202ENST00000357604 RBM8AQ9Y5S9 174 aaKnown RBP10.72□□□□□ -0.69
UPF2-202ENST00000357604 MANSC4A6NHS7 340 aaPredicted RBP10.72□□□□□ -0.69
UPF2-202ENST00000357604 CYP2E1P05181 493 aaPredicted RBP10.72□□□□□ -0.69
UPF2-202ENST00000357604 RASA3Q14644 834 aa10.72□□□□□ -0.69
UPF2-202ENST00000357604 CDC42EP5Q6NZY7 148 aa10.72□□□□□ -0.69
UPF2-202ENST00000357604 CTNND1O60716 968 aaKnown RBP10.71□□□□□ -0.69
UPF2-202ENST00000357604 PRDX5P30044 214 aa10.71□□□□□ -0.69
UPF2-202ENST00000357604 HAND2P61296 217 aa10.71□□□□□ -0.69
UPF2-202ENST00000357604 NAP1L4Q99733 375 aaKnown RBP10.71□□□□□ -0.69
UPF2-202ENST00000357604 GPR75-ASB3A0A0A6YYF3 556 aa10.71□□□□□ -0.69
UPF2-202ENST00000357604 UNCXA6NJT0 531 aa10.71□□□□□ -0.69
UPF2-202ENST00000357604 MTMR14Q8NCE2 650 aa10.71□□□□□ -0.69
UPF2-202ENST00000357604 DEFB129Q9H1M3 183 aa10.71□□□□□ -0.69
UPF2-202ENST00000357604 SH2B1Q9NRF2 756 aaPredicted RBP10.71□□□□□ -0.69
UPF2-202ENST00000357604 EPS15P42566 896 aa10.71□□□□□ -0.7
UPF2-202ENST00000357604 DYNLL1P63167 89 aaKnown RBP10.71□□□□□ -0.7
UPF2-202ENST00000357604 MCTP2Q6DN12 878 aa10.71□□□□□ -0.7
UPF2-202ENST00000357604 FAM160B2Q86V87 743 aa10.71□□□□□ -0.7
UPF2-202ENST00000357604 BICD2Q8TD16 824 aa10.71□□□□□ -0.7
UPF2-202ENST00000357604 USP17L12C9JPN9 530 aa10.7□□□□□ -0.7
UPF2-202ENST00000357604 USP17L21D6R901 530 aa10.7□□□□□ -0.7
UPF2-202ENST00000357604 TTLL1O95922 423 aa10.7□□□□□ -0.7
UPF2-202ENST00000357604 TOP1P11387 765 aaKnown RBP10.7□□□□□ -0.7
UPF2-202ENST00000357604 PDCP20941 246 aa10.7□□□□□ -0.7
UPF2-202ENST00000357604 PPP4CP60510 307 aa10.7□□□□□ -0.7
UPF2-202ENST00000357604 AKNAD1Q5T1N1 836 aa10.7□□□□□ -0.7
UPF2-202ENST00000357604 INHBEP58166 350 aa10.7□□□□□ -0.7
UPF2-202ENST00000357604 CDCA5Q96FF9 252 aa10.7□□□□□ -0.7
UPF2-202ENST00000357604 L3MBTL3Q96JM7 780 aaPredicted RBP10.7□□□□□ -0.7
UPF2-202ENST00000357604 TAF1LQ8IZX4 1826 aa10.7□□□□□ -0.7
UPF2-202ENST00000357604 FDX1P10109 184 aa10.7□□□□□ -0.7
UPF2-202ENST00000357604 ZNF280AP59817 542 aaPredicted RBP10.7□□□□□ -0.7
UPF2-202ENST00000357604 BRDTQ58F21 947 aaPredicted RBP10.7□□□□□ -0.7
UPF2-202ENST00000357604 LCORLQ8N3X6 602 aa10.7□□□□□ -0.7
UPF2-202ENST00000357604 METAP2P50579 478 aaKnown RBP eCLIP10.7□□□□□ -0.7
UPF2-202ENST00000357604 SGIP1Q9BQI5 828 aa10.7□□□□□ -0.7
UPF2-202ENST00000357604 N4BP2Q86UW6 1770 aaPredicted RBP10.69□□□□□ -0.7
UPF2-202ENST00000357604 NUP98P52948 1817 aa10.69□□□□□ -0.7
UPF2-202ENST00000357604 LRP5O75197 1615 aa10.69□□□□□ -0.7
UPF2-202ENST00000357604 SLC1A4P43007 532 aa10.69□□□□□ -0.7
UPF2-202ENST00000357604 M0R2C6 588 aa10.69□□□□□ -0.7
UPF2-202ENST00000357604 PRC1O43663 620 aa10.69□□□□□ -0.7
UPF2-202ENST00000357604 DCAF4Q8WV16 495 aa10.69□□□□□ -0.7
UPF2-202ENST00000357604 ELP3Q9H9T3 547 aa10.69□□□□□ -0.7
UPF2-202ENST00000357604 MCF2L2Q86YR7 1114 aa10.69□□□□□ -0.7
UPF2-202ENST00000357604 SCYL3Q8IZE3 742 aa10.69□□□□□ -0.7
UPF2-202ENST00000357604 KAZALD1Q96I82 304 aa10.69□□□□□ -0.7
UPF2-202ENST00000357604 KLRK1P26718 216 aa10.69□□□□□ -0.7
UPF2-202ENST00000357604 RTN1Q16799 776 aa10.69□□□□□ -0.7
UPF2-202ENST00000357604 TFAP4Q01664 338 aa10.68□□□□□ -0.7
UPF2-202ENST00000357604 MIGA2Q7L4E1 593 aa10.68□□□□□ -0.7
UPF2-202ENST00000357604 HOXC10Q9NYD6 342 aa10.68□□□□□ -0.7
UPF2-202ENST00000357604 ZBTB43O43298 467 aa10.68□□□□□ -0.7
UPF2-202ENST00000357604 CREB3L3Q68CJ9 461 aa10.68□□□□□ -0.7
UPF2-202ENST00000357604 MCTP1Q6DN14 999 aa10.68□□□□□ -0.7
UPF2-202ENST00000357604 SDR42E1Q8WUS8 393 aa10.68□□□□□ -0.7
UPF2-202ENST00000357604 COA7Q96BR5 231 aa10.68□□□□□ -0.7
UPF2-202ENST00000357604 DDAH1O94760 285 aa10.68□□□□□ -0.7
UPF2-202ENST00000357604 NEK4P51957 841 aa10.68□□□□□ -0.7
UPF2-202ENST00000357604 RCSD1Q6JBY9 416 aa10.68□□□□□ -0.7
UPF2-202ENST00000357604 VGLL2Q8N8G2 317 aa10.68□□□□□ -0.7
UPF2-202ENST00000357604 PALD1Q9ULE6 856 aa10.68□□□□□ -0.7
UPF2-202ENST00000357604 USP17L10C9JJH3 530 aa10.68□□□□□ -0.7
UPF2-202ENST00000357604 CTDSPL2Q05D32 466 aa10.68□□□□□ -0.7
UPF2-202ENST00000357604 DEFB115Q30KQ5 88 aa10.68□□□□□ -0.7
UPF2-202ENST00000357604 SMARCC2Q8TAQ2 1214 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms