RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 ENTPD3O75355 529 aa13.96□□□□□ -0.18
RTN3-204ENST00000354497 SH3BP5LQ7L8J4 393 aa13.96□□□□□ -0.18
RTN3-204ENST00000354497 GNL3LQ9NVN8 582 aaKnown RBP13.96□□□□□ -0.18
RTN3-204ENST00000354497 A0A0C4DFX4 3053 aa13.96□□□□□ -0.18
RTN3-204ENST00000354497 CUL9Q8IWT3 2517 aa13.95□□□□□ -0.18
RTN3-204ENST00000354497 MYH13Q9UKX3 1938 aa13.95□□□□□ -0.18
RTN3-204ENST00000354497 DDTLA6NHG4 134 aaPredicted RBP13.95□□□□□ -0.18
RTN3-204ENST00000354497 PRKAR2AP13861 404 aaKnown RBP13.95□□□□□ -0.18
RTN3-204ENST00000354497 CYP2B6P20813 491 aa13.95□□□□□ -0.18
RTN3-204ENST00000354497 CCDC184Q52MB2 194 aa13.95□□□□□ -0.18
RTN3-204ENST00000354497 DOCK1Q14185 1865 aa13.95□□□□□ -0.18
RTN3-204ENST00000354497 FAM196BA6NMK8 535 aa13.94□□□□□ -0.18
RTN3-204ENST00000354497 GCLCP48506 637 aaPredicted RBP13.94□□□□□ -0.18
RTN3-204ENST00000354497 PABPC4Q13310 644 aaKnown RBP eCLIP13.94□□□□□ -0.183e-7■■■□□ 18.1
RTN3-204ENST00000354497 DZIP1Q86YF9 867 aaKnown RBP13.94□□□□□ -0.18
RTN3-204ENST00000354497 WDR63Q8IWG1 891 aa13.94□□□□□ -0.18
RTN3-204ENST00000354497 TRIB2Q92519 343 aa13.94□□□□□ -0.18
RTN3-204ENST00000354497 GUCD1Q96NT3 240 aa13.94□□□□□ -0.18
RTN3-204ENST00000354497 IDI2Q9BXS1 227 aa13.94□□□□□ -0.18
RTN3-204ENST00000354497 OGDHLQ9ULD0 1010 aa13.94□□□□□ -0.18
RTN3-204ENST00000354497 UTYO14607 1347 aa13.94□□□□□ -0.18
RTN3-204ENST00000354497 PFASO15067 1338 aa13.94□□□□□ -0.18
RTN3-204ENST00000354497 EYA2O00167 538 aa13.93□□□□□ -0.18
RTN3-204ENST00000354497 HMGCS2P54868 508 aa13.93□□□□□ -0.18
RTN3-204ENST00000354497 SPP2Q13103 211 aa13.93□□□□□ -0.18
RTN3-204ENST00000354497 ATP2B3Q16720 1220 aa13.93□□□□□ -0.18
RTN3-204ENST00000354497 PROCA1Q8NCQ7 364 aaPredicted RBP13.93□□□□□ -0.18
RTN3-204ENST00000354497 SIL1Q9H173 461 aa13.93□□□□□ -0.18
RTN3-204ENST00000354497 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.93□□□□□ -0.18
RTN3-204ENST00000354497 DDX4Q9NQI0 724 aaKnown RBP13.93□□□□□ -0.18
RTN3-204ENST00000354497 GJD2Q9UKL4 321 aa13.93□□□□□ -0.18
RTN3-204ENST00000354497 DENND2AQ9ULE3 1009 aa13.93□□□□□ -0.18
RTN3-204ENST00000354497 BTDP43251 543 aa13.92□□□□□ -0.18
RTN3-204ENST00000354497 LRRC26Q2I0M4 334 aa13.92□□□□□ -0.18
RTN3-204ENST00000354497 LBHD1Q9BQE6 289 aaPredicted RBP13.92□□□□□ -0.18
RTN3-204ENST00000354497 ASCC2Q9H1I8 757 aaPredicted RBP13.92□□□□□ -0.18
RTN3-204ENST00000354497 ABCF2Q9UG63 623 aa13.92□□□□□ -0.18
RTN3-204ENST00000354497 ZKSCAN1P17029 563 aaPredicted RBP13.91□□□□□ -0.18
RTN3-204ENST00000354497 ZNF697Q5TEC3 545 aa13.91□□□□□ -0.18
RTN3-204ENST00000354497 ZNF280CQ8ND82 737 aa13.91□□□□□ -0.18
RTN3-204ENST00000354497 PTPRFP10586 1907 aa13.91□□□□□ -0.18
RTN3-204ENST00000354497 RFX7Q2KHR2 1363 aa13.91□□□□□ -0.18
RTN3-204ENST00000354497 GAKO14976 1311 aa13.9□□□□□ -0.18
RTN3-204ENST00000354497 SALL1Q9NSC2 1324 aa13.9□□□□□ -0.18
RTN3-204ENST00000354497 PEX10O60683 326 aa13.9□□□□□ -0.18
RTN3-204ENST00000354497 PHKA1P46020 1223 aa13.9□□□□□ -0.18
RTN3-204ENST00000354497 IRX3P78415 501 aaPredicted RBP13.9□□□□□ -0.18
RTN3-204ENST00000354497 PDE3AQ14432 1141 aa13.9□□□□□ -0.18
RTN3-204ENST00000354497 CCAR1Q8IX12 1150 aaKnown RBP13.9□□□□□ -0.18
RTN3-204ENST00000354497 SLF2Q8IX21 1173 aa13.9□□□□□ -0.18
RTN3-204ENST00000354497 ZGPATQ8N5A5 531 aaKnown RBP13.9□□□□□ -0.18
RTN3-204ENST00000354497 PKNOX2Q96KN3 472 aa13.9□□□□□ -0.18
RTN3-204ENST00000354497 NUDT12Q9BQG2 462 aa13.9□□□□□ -0.18
RTN3-204ENST00000354497 CWC22Q9HCG8 908 aaKnown RBP13.9□□□□□ -0.18
RTN3-204ENST00000354497 PHIPQ8WWQ0 1821 aa13.9□□□□□ -0.18
RTN3-204ENST00000354497 CCND3P30281 292 aaPredicted RBP13.9□□□□□ -0.19
RTN3-204ENST00000354497 MAP3K10Q02779 954 aa13.9□□□□□ -0.19
RTN3-204ENST00000354497 CEP126Q9P2H0 1117 aa13.9□□□□□ -0.19
RTN3-204ENST00000354497 UNC80Q8N2C7 3258 aa13.89□□□□□ -0.19
RTN3-204ENST00000354497 POTEB2H3BUK9 544 aa13.89□□□□□ -0.19
RTN3-204ENST00000354497 SEMA3EO15041 775 aa13.89□□□□□ -0.19
RTN3-204ENST00000354497 RFX5P48382 616 aaPredicted RBP13.89□□□□□ -0.19
RTN3-204ENST00000354497 CACNB2Q08289 660 aaPredicted RBP13.89□□□□□ -0.19
RTN3-204ENST00000354497 MAP3K21Q5TCX8 1036 aa13.89□□□□□ -0.19
RTN3-204ENST00000354497 FAM109BQ6ICB4 259 aaPredicted RBP13.89□□□□□ -0.19
RTN3-204ENST00000354497 ATG9AQ7Z3C6 839 aa13.89□□□□□ -0.19
RTN3-204ENST00000354497 SOCS4Q8WXH5 440 aa13.89□□□□□ -0.19
RTN3-204ENST00000354497 OSBPL5Q9H0X9 879 aaPredicted RBP13.89□□□□□ -0.19
RTN3-204ENST00000354497 AS3MTQ9HBK9 375 aa13.89□□□□□ -0.19
RTN3-204ENST00000354497 FBXO3Q9UK99 471 aa13.89□□□□□ -0.19
RTN3-204ENST00000354497 MROH7-TTC4A0A0A0MT08 1334 aa13.88□□□□□ -0.19
RTN3-204ENST00000354497 USP17L5A8MUK1 530 aa13.88□□□□□ -0.19
RTN3-204ENST00000354497 COL6A1P12109 1028 aa13.88□□□□□ -0.19
RTN3-204ENST00000354497 ADORA1P30542 326 aa13.88□□□□□ -0.19
RTN3-204ENST00000354497 MAFAQ8NHW3 353 aaPredicted RBP13.88□□□□□ -0.19
RTN3-204ENST00000354497 SENP6Q9GZR1 1112 aaPredicted RBP13.88□□□□□ -0.19
RTN3-204ENST00000354497 TMOD4Q9NZQ9 345 aa13.88□□□□□ -0.19
RTN3-204ENST00000354497 MORF4L1Q9UBU8 362 aa13.88□□□□□ -0.19
RTN3-204ENST00000354497 PRKAG2Q9UGJ0 569 aa13.88□□□□□ -0.19
RTN3-204ENST00000354497 RBM19Q9Y4C8 960 aaKnown RBP13.88□□□□□ -0.19
RTN3-204ENST00000354497 LOC285556D6RIA3 1793 aa13.88□□□□□ -0.19
RTN3-204ENST00000354497 TBC1D12O60347 775 aa13.87□□□□□ -0.19
RTN3-204ENST00000354497 ATN1P54259 1190 aaPredicted RBP13.87□□□□□ -0.19
RTN3-204ENST00000354497 MTMR2Q13614 643 aa13.87□□□□□ -0.19
RTN3-204ENST00000354497 CCL14Q16627 93 aa13.87□□□□□ -0.19
RTN3-204ENST00000354497 SPTY2D1Q68D10 685 aaPredicted RBP13.87□□□□□ -0.19
RTN3-204ENST00000354497 CCDC102BQ68D86 513 aa13.87□□□□□ -0.19
RTN3-204ENST00000354497 TRMT44Q8IYL2 757 aaKnown RBP13.87□□□□□ -0.19
RTN3-204ENST00000354497 GPRC5AQ8NFJ5 357 aa13.87□□□□□ -0.19
RTN3-204ENST00000354497 P2RX7Q99572 595 aaKnown RBP13.87□□□□□ -0.19
RTN3-204ENST00000354497 CDX2Q99626 313 aaPredicted RBP13.87□□□□□ -0.19
RTN3-204ENST00000354497 PAGR1Q9BTK6 254 aa13.87□□□□□ -0.19
RTN3-204ENST00000354497 TBC1D2Q9BYX2 928 aa13.87□□□□□ -0.19
RTN3-204ENST00000354497 PRDM6Q9NQX0 595 aa13.87□□□□□ -0.19
RTN3-204ENST00000354497 MYH2Q9UKX2 1941 aa13.87□□□□□ -0.19
RTN3-204ENST00000354497 DOCK3Q8IZD9 2030 aa13.86□□□□□ -0.19
RTN3-204ENST00000354497 CAP2P40123 477 aa13.86□□□□□ -0.19
RTN3-204ENST00000354497 RGS2P41220 211 aa13.86□□□□□ -0.19
RTN3-204ENST00000354497 USP44Q9H0E7 712 aa13.86□□□□□ -0.19
RTN3-204ENST00000354497 MRS2Q9HD23 443 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms