RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 NT5DC1Q5TFE4 455 aa7.73□□□□□ -1.17
VPS39-202ENST00000348544 KCNV1Q6PIU1 500 aa7.73□□□□□ -1.17
VPS39-202ENST00000348544 NUTM2AQ8IVF1 878 aaPredicted RBP7.73□□□□□ -1.17
VPS39-202ENST00000348544 OSBP2Q969R2 916 aa7.73□□□□□ -1.17
VPS39-202ENST00000348544 LRRC59Q96AG4 307 aaKnown RBP7.73□□□□□ -1.17
VPS39-202ENST00000348544 NAPGQ99747 312 aaPredicted RBP7.73□□□□□ -1.17
VPS39-202ENST00000348544 TUBB2BQ9BVA1 445 aa7.73□□□□□ -1.17
VPS39-202ENST00000348544 GBP3Q9H0R5 595 aa7.73□□□□□ -1.17
VPS39-202ENST00000348544 HPCAL4Q9UM19 191 aa7.73□□□□□ -1.17
VPS39-202ENST00000348544 UBE2Q2LH0YL09 131 aa7.73□□□□□ -1.17
VPS39-202ENST00000348544 RNF113AO15541 343 aaKnown RBP7.73□□□□□ -1.17
VPS39-202ENST00000348544 SHOX2O60902 331 aaPredicted RBP7.73□□□□□ -1.17
VPS39-202ENST00000348544 LIG3P49916 1009 aa7.73□□□□□ -1.17
VPS39-202ENST00000348544 POSTNQ15063 836 aa7.73□□□□□ -1.17
VPS39-202ENST00000348544 STK11IPQ8N1F8 1099 aa7.73□□□□□ -1.17
VPS39-202ENST00000348544 JMYQ8N9B5 988 aa7.73□□□□□ -1.17
VPS39-202ENST00000348544 ALG1Q9BT22 464 aa7.73□□□□□ -1.17
VPS39-202ENST00000348544 VIPAS39Q9H9C1 493 aa7.73□□□□□ -1.17
VPS39-202ENST00000348544 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.73□□□□□ -1.17
VPS39-202ENST00000348544 DENND2AQ9ULE3 1009 aa7.73□□□□□ -1.17
VPS39-202ENST00000348544 SETD1BQ9UPS6 1966 aaKnown RBP7.72□□□□□ -1.17
VPS39-202ENST00000348544 GYPCP04921 128 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 MYL6BP14649 208 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 RXRAP19793 462 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 FECHP22830 423 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 LTKP29376 864 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 CASP14P31944 242 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 FXR1P51114 621 aaKnown RBP eCLIP7.72□□□□□ -1.17
VPS39-202ENST00000348544 EIF5P55010 431 aaKnown RBP7.72□□□□□ -1.17
VPS39-202ENST00000348544 TIMM10P62072 90 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 ERVK-24P63145 666 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 TUBB4BP68371 445 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 CT47A1Q5JQC4 288 aaPredicted RBP7.72□□□□□ -1.17
VPS39-202ENST00000348544 TTC39AQ5SRH9 613 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 UBE3BQ7Z3V4 1068 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 ABTB2Q8N961 1025 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 MLKLQ8NB16 471 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 XAGE3Q8WTP9 111 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 METTL22Q9BUU2 404 aaPredicted RBP7.72□□□□□ -1.17
VPS39-202ENST00000348544 NAA15Q9BXJ9 866 aaKnown RBP7.72□□□□□ -1.17
VPS39-202ENST00000348544 EHD4Q9H223 541 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 SERTAD1Q9UHV2 236 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 C5P01031 1676 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 UBR1Q8IWV7 1749 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 SIPA1L3O60292 1781 aaPredicted RBP7.72□□□□□ -1.17
VPS39-202ENST00000348544 RNF225M0QZC1 329 aaPredicted RBP7.72□□□□□ -1.17
VPS39-202ENST00000348544 PLCD1P51178 756 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 HDGFP51858 240 aaKnown RBP7.72□□□□□ -1.17
VPS39-202ENST00000348544 PIP4K2BP78356 416 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 NEXNQ0ZGT2 675 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 ATG9AQ7Z3C6 839 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 ELOA2Q8IYF1 753 aaPredicted RBP7.72□□□□□ -1.17
VPS39-202ENST00000348544 IP6K1Q92551 441 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 PHKBQ93100 1093 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 GDAP1L1Q96MZ0 367 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 NEUROD6Q96NK8 337 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 CEP89Q96ST8 783 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 ACBD3Q9H3P7 528 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 KAT14Q9H8E8 782 aa7.72□□□□□ -1.17
VPS39-202ENST00000348544 ADD3Q9UEY8 706 aaKnown RBP7.72□□□□□ -1.17
VPS39-202ENST00000348544 CPDO75976 1380 aa7.71□□□□□ -1.17
VPS39-202ENST00000348544 AGPSO00116 658 aa7.71□□□□□ -1.17
VPS39-202ENST00000348544 POLR2DO15514 142 aaKnown RBP7.71□□□□□ -1.17
VPS39-202ENST00000348544 ERLIN2O94905 339 aa7.71□□□□□ -1.17
VPS39-202ENST00000348544 FGAP02671 866 aa7.71□□□□□ -1.17
VPS39-202ENST00000348544 MYBL2P10244 700 aa7.71□□□□□ -1.17
VPS39-202ENST00000348544 GGCXP38435 758 aa7.71□□□□□ -1.17
VPS39-202ENST00000348544 CCT5P48643 541 aa7.71□□□□□ -1.17
VPS39-202ENST00000348544 USP14P54578 494 aa7.71□□□□□ -1.17
VPS39-202ENST00000348544 FBXW10Q5XX13 1052 aa7.71□□□□□ -1.17
VPS39-202ENST00000348544 COPS6Q7L5N1 327 aa7.71□□□□□ -1.17
VPS39-202ENST00000348544 PPFIBP1Q86W92 1011 aa7.71□□□□□ -1.17
VPS39-202ENST00000348544 SENP2Q9HC62 589 aa7.71□□□□□ -1.17
VPS39-202ENST00000348544 MYO6Q9UM54 1294 aa7.71□□□□□ -1.17
VPS39-202ENST00000348544 TTF2Q9UNY4 1162 aaKnown RBP7.71□□□□□ -1.17
VPS39-202ENST00000348544 TUBBP07437 444 aa7.71□□□□□ -1.18
VPS39-202ENST00000348544 CD44P16070 742 aaKnown RBP7.71□□□□□ -1.18
VPS39-202ENST00000348544 HNRNPH1P31943 449 aaKnown RBP7.71□□□□□ -1.18
VPS39-202ENST00000348544 PIP4K2AP48426 406 aaPredicted RBP7.71□□□□□ -1.18
VPS39-202ENST00000348544 TOB1P50616 345 aaPredicted RBP7.71□□□□□ -1.18
VPS39-202ENST00000348544 AKAP17AQ02040 695 aaKnown RBP7.71□□□□□ -1.18
VPS39-202ENST00000348544 HSP90AB3PQ58FF7 597 aa7.71□□□□□ -1.18
VPS39-202ENST00000348544 CCDC91Q7Z6B0 441 aa7.71□□□□□ -1.18
VPS39-202ENST00000348544 GSPT2Q8IYD1 628 aaKnown RBP7.71□□□□□ -1.18
VPS39-202ENST00000348544 KRI1Q8N9T8 703 aaKnown RBP7.71□□□□□ -1.18
VPS39-202ENST00000348544 CTCFLQ8NI51 663 aaPredicted RBP7.71□□□□□ -1.18
VPS39-202ENST00000348544 NBPF3Q9H094 633 aa7.71□□□□□ -1.18
VPS39-202ENST00000348544 CXorf56Q9H5V9 222 aa7.71□□□□□ -1.18
VPS39-202ENST00000348544 HDAC6Q9UBN7 1215 aa7.71□□□□□ -1.18
VPS39-202ENST00000348544 TRIM10Q9UDY6 481 aa7.71□□□□□ -1.18
VPS39-202ENST00000348544 HOOK1Q9UJC3 728 aaKnown RBP7.71□□□□□ -1.18
VPS39-202ENST00000348544 FAM169AQ9Y6X4 670 aa7.71□□□□□ -1.18
VPS39-202ENST00000348544 ZMYM6O95789 1325 aa7.71□□□□□ -1.18
VPS39-202ENST00000348544 MAP3K15Q6ZN16 1313 aa7.71□□□□□ -1.18
VPS39-202ENST00000348544 NFAT5O94916 1531 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 ACTN4O43707 911 aaKnown RBP7.7□□□□□ -1.18
VPS39-202ENST00000348544 RANBP6O60518 1105 aaKnown RBP7.7□□□□□ -1.18
VPS39-202ENST00000348544 ZMYND10O75800 440 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 CDC25AP30304 524 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 IRAK1P51617 712 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms