RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 STAG1Q8WVM7 1258 aa22.55■■□□□ 1.2
CHMP4A-201ENST00000347519 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.55■■□□□ 1.2
CHMP4A-201ENST00000347519 POTEIP0CG38 1075 aa22.54■■□□□ 1.2
CHMP4A-201ENST00000347519 POTEJP0CG39 1038 aa22.54■■□□□ 1.2
CHMP4A-201ENST00000347519 GABPAQ06546 454 aa22.54■■□□□ 1.2
CHMP4A-201ENST00000347519 TEPSINQ96N21 525 aa22.54■■□□□ 1.2
CHMP4A-201ENST00000347519 NMRK2Q9NPI5 230 aa22.54■■□□□ 1.2
CHMP4A-201ENST00000347519 FAM196BA6NMK8 535 aa22.53■■□□□ 1.2
CHMP4A-201ENST00000347519 PRDM1O75626 825 aa22.53■■□□□ 1.2
CHMP4A-201ENST00000347519 FGRP09769 529 aa22.53■■□□□ 1.2
CHMP4A-201ENST00000347519 EAPPQ56P03 285 aaPredicted RBP22.53■■□□□ 1.2
CHMP4A-201ENST00000347519 DLK2Q6UY11 383 aa22.53■■□□□ 1.2
CHMP4A-201ENST00000347519 TTC6Q86TZ1 520 aa22.53■■□□□ 1.2
CHMP4A-201ENST00000347519 APOBEC3FQ8IUX4 373 aaKnown RBP22.53■■□□□ 1.2
CHMP4A-201ENST00000347519 UPF3BQ9BZI7 483 aaKnown RBP22.53■■□□□ 1.2
CHMP4A-201ENST00000347519 DEFB129Q9H1M3 183 aa22.53■■□□□ 1.2
CHMP4A-201ENST00000347519 DNAJC18Q9H819 358 aa22.53■■□□□ 1.2
CHMP4A-201ENST00000347519 PRAMEF18Q5VWM3 479 aa22.52■■□□□ 1.2
CHMP4A-201ENST00000347519 C16orf86Q6ZW13 317 aa22.52■■□□□ 1.2
CHMP4A-201ENST00000347519 AMOTL1Q8IY63 956 aa22.52■■□□□ 1.2
CHMP4A-201ENST00000347519 NEK1Q96PY6 1258 aa22.52■■□□□ 1.2
CHMP4A-201ENST00000347519 DHX36Q9H2U1 1008 aaKnown RBP22.52■■□□□ 1.2
CHMP4A-201ENST00000347519 MYH8P13535 1937 aa22.52■■□□□ 1.2
CHMP4A-201ENST00000347519 B4E1Z4 1266 aa22.51■■□□□ 1.19
CHMP4A-201ENST00000347519 CASTP20810 708 aaKnown RBP22.51■■□□□ 1.19
CHMP4A-201ENST00000347519 TNNI2P48788 182 aa22.51■■□□□ 1.19
CHMP4A-201ENST00000347519 CDK8P49336 464 aa22.51■■□□□ 1.19
CHMP4A-201ENST00000347519 KRT32Q14532 448 aa22.51■■□□□ 1.19
CHMP4A-201ENST00000347519 MFSD6Q6ZSS7 791 aa22.51■■□□□ 1.19
CHMP4A-201ENST00000347519 MB21D2Q8IYB1 491 aaPredicted RBP22.51■■□□□ 1.19
CHMP4A-201ENST00000347519 TM6SF1Q9BZW5 370 aa22.51■■□□□ 1.19
CHMP4A-201ENST00000347519 ZSWIM6Q9HCJ5 1215 aa22.51■■□□□ 1.19
CHMP4A-201ENST00000347519 RBM19Q9Y4C8 960 aaKnown RBP22.51■■□□□ 1.19
CHMP4A-201ENST00000347519 PITPNM2Q9BZ72 1349 aa22.51■■□□□ 1.19
CHMP4A-201ENST00000347519 ADM5C9JUS6 153 aa22.5■■□□□ 1.19
CHMP4A-201ENST00000347519 HLA-DOAP06340 250 aa22.5■■□□□ 1.19
CHMP4A-201ENST00000347519 VEGFAP15692 232 aaPredicted RBP22.5■■□□□ 1.19
CHMP4A-201ENST00000347519 TNFAIP1Q13829 316 aa22.5■■□□□ 1.19
CHMP4A-201ENST00000347519 RRP12Q5JTH9 1297 aaKnown RBP22.5■■□□□ 1.19
CHMP4A-201ENST00000347519 CYB5R4Q7L1T6 521 aa22.5■■□□□ 1.19
CHMP4A-201ENST00000347519 TCEANC2Q96MN5 208 aa22.5■■□□□ 1.19
CHMP4A-201ENST00000347519 CSRNP1Q96S65 589 aa22.5■■□□□ 1.19
CHMP4A-201ENST00000347519 EHD4Q9H223 541 aa22.5■■□□□ 1.19
CHMP4A-201ENST00000347519 PI4KBQ9UBF8 816 aa22.5■■□□□ 1.19
CHMP4A-201ENST00000347519 CEP350Q5VT06 3117 aa22.5■■□□□ 1.19
CHMP4A-201ENST00000347519 ANTXR2P58335 489 aa22.5■■□□□ 1.19
CHMP4A-201ENST00000347519 NBPF12Q5TAG4 269 aaPredicted RBP22.5■■□□□ 1.19
CHMP4A-201ENST00000347519 CHST3Q7LGC8 479 aa22.5■■□□□ 1.19
CHMP4A-201ENST00000347519 METTL16Q86W50 562 aaKnown RBP22.5■■□□□ 1.19
CHMP4A-201ENST00000347519 SERPINB13Q9UIV8 391 aa22.5■■□□□ 1.19
CHMP4A-201ENST00000347519 ORC4O43929 436 aa22.49■■□□□ 1.19
CHMP4A-201ENST00000347519 SLC3A2P08195 630 aaKnown RBP22.49■■□□□ 1.19
CHMP4A-201ENST00000347519 RPS6KB1P23443 525 aa22.49■■□□□ 1.19
CHMP4A-201ENST00000347519 SHMT1P34896 483 aa22.49■■□□□ 1.19
CHMP4A-201ENST00000347519 RABEP1Q15276 862 aa22.49■■□□□ 1.19
CHMP4A-201ENST00000347519 PNMA8AQ86V59 439 aaPredicted RBP22.49■■□□□ 1.19
CHMP4A-201ENST00000347519 NCOA7Q8NI08 942 aa22.49■■□□□ 1.19
CHMP4A-201ENST00000347519 ZC3H15Q8WU90 426 aaKnown RBP22.49■■□□□ 1.19
CHMP4A-201ENST00000347519 DCPSQ96C86 337 aaKnown RBP22.49■■□□□ 1.19
CHMP4A-201ENST00000347519 RNF41Q9H4P4 317 aaPredicted RBP22.49■■□□□ 1.19
CHMP4A-201ENST00000347519 TOMM22Q9NS69 142 aa22.49■■□□□ 1.19
CHMP4A-201ENST00000347519 KDM4AO75164 1064 aa22.48■■□□□ 1.19
CHMP4A-201ENST00000347519 RASA1P20936 1047 aa22.48■■□□□ 1.19
CHMP4A-201ENST00000347519 PSMA5P28066 241 aa22.48■■□□□ 1.19
CHMP4A-201ENST00000347519 EXOSC10Q01780 885 aaKnown RBP22.48■■□□□ 1.19
CHMP4A-201ENST00000347519 PDE4BQ07343 736 aa22.48■■□□□ 1.19
CHMP4A-201ENST00000347519 FAM47AQ5JRC9 791 aa22.48■■□□□ 1.19
CHMP4A-201ENST00000347519 BLOC1S2Q6QNY1 142 aa22.48■■□□□ 1.19
CHMP4A-201ENST00000347519 RUFY3Q7L099 469 aa22.48■■□□□ 1.19
CHMP4A-201ENST00000347519 FOXP4Q8IVH2 680 aaPredicted RBP22.48■■□□□ 1.19
CHMP4A-201ENST00000347519 LRRC2Q9BYS8 371 aa22.48■■□□□ 1.19
CHMP4A-201ENST00000347519 NEK4P51957 841 aa22.47■■□□□ 1.19
CHMP4A-201ENST00000347519 RRP1BQ14684 758 aaKnown RBP22.47■■□□□ 1.19
CHMP4A-201ENST00000347519 MIGA2Q7L4E1 593 aa22.47■■□□□ 1.19
CHMP4A-201ENST00000347519 RALYLQ86SE5 291 aaKnown RBP22.47■■□□□ 1.19
CHMP4A-201ENST00000347519 USP48Q86UV5 1035 aa22.47■■□□□ 1.19
CHMP4A-201ENST00000347519 CRACR2BQ8N4Y2 399 aaPredicted RBP22.47■■□□□ 1.19
CHMP4A-201ENST00000347519 TTC14Q96N46 770 aa22.47■■□□□ 1.19
CHMP4A-201ENST00000347519 MKNK2Q9HBH9 465 aa22.47■■□□□ 1.19
CHMP4A-201ENST00000347519 GPHNQ9NQX3 736 aaPredicted RBP22.47■■□□□ 1.19
CHMP4A-201ENST00000347519 ZSWIM5Q9P217 1185 aa22.47■■□□□ 1.19
CHMP4A-201ENST00000347519 CYP46A1Q9Y6A2 500 aa22.47■■□□□ 1.19
CHMP4A-201ENST00000347519 SSC5DA1L4H1 1573 aa22.47■■□□□ 1.19
CHMP4A-201ENST00000347519 CD2BP2O95400 341 aaKnown RBP22.46■■□□□ 1.19
CHMP4A-201ENST00000347519 PCP11498 1178 aaKnown RBP22.46■■□□□ 1.19
CHMP4A-201ENST00000347519 TRDNQ13061 729 aa22.46■■□□□ 1.19
CHMP4A-201ENST00000347519 SHROOM1Q2M3G4 852 aaPredicted RBP22.46■■□□□ 1.19
CHMP4A-201ENST00000347519 DHX32Q7L7V1 743 aaKnown RBP22.46■■□□□ 1.19
CHMP4A-201ENST00000347519 KRT26Q7Z3Y9 468 aa22.46■■□□□ 1.19
CHMP4A-201ENST00000347519 GLIS2Q9BZE0 524 aaPredicted RBP22.46■■□□□ 1.19
CHMP4A-201ENST00000347519 KRT23Q9C075 422 aa22.46■■□□□ 1.19
CHMP4A-201ENST00000347519 CNNM2Q9H8M5 875 aa22.46■■□□□ 1.19
CHMP4A-201ENST00000347519 CLEC11AQ9Y240 323 aa22.46■■□□□ 1.19
CHMP4A-201ENST00000347519 RANBP6O60518 1105 aaKnown RBP22.45■■□□□ 1.18
CHMP4A-201ENST00000347519 MAP3K10Q02779 954 aa22.45■■□□□ 1.18
CHMP4A-201ENST00000347519 SULF1Q8IWU6 871 aa22.45■■□□□ 1.18
CHMP4A-201ENST00000347519 SWAP70Q9UH65 585 aa22.45■■□□□ 1.18
CHMP4A-201ENST00000347519 PRC1O43663 620 aa22.44■■□□□ 1.18
CHMP4A-201ENST00000347519 AKR1B1P15121 316 aa22.44■■□□□ 1.18
CHMP4A-201ENST00000347519 JAG1P78504 1218 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms