RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 SLC10A5Q5PT55 438 aa17.85■□□□□ 0.45
UPF3B-202ENST00000345865 ISM2Q6H9L7 571 aa17.85■□□□□ 0.45
UPF3B-202ENST00000345865 NOSTRINQ8IVI9 506 aa17.85■□□□□ 0.45
UPF3B-202ENST00000345865 CCDC24Q8N4L8 307 aa17.85■□□□□ 0.45
UPF3B-202ENST00000345865 FANCBQ8NB91 859 aa17.85■□□□□ 0.45
UPF3B-202ENST00000345865 NAT10Q9H0A0 1025 aaKnown RBP17.85■□□□□ 0.45
UPF3B-202ENST00000345865 RNF41Q9H4P4 317 aaPredicted RBP17.85■□□□□ 0.45
UPF3B-202ENST00000345865 GNL3LQ9NVN8 582 aaKnown RBP17.85■□□□□ 0.45
UPF3B-202ENST00000345865 FAM237AA0A1B0GTK4 181 aa17.84■□□□□ 0.45
UPF3B-202ENST00000345865 RBM6P78332 1123 aaKnown RBP17.84■□□□□ 0.45
UPF3B-202ENST00000345865 RESP18Q5W5W9 173 aa17.84■□□□□ 0.45
UPF3B-202ENST00000345865 LRRC8AQ8IWT6 810 aa17.84■□□□□ 0.45
UPF3B-202ENST00000345865 DIS3L2Q8IYB7 885 aaKnown RBP17.84■□□□□ 0.45
UPF3B-202ENST00000345865 NUP133Q8WUM0 1156 aa17.84■□□□□ 0.45
UPF3B-202ENST00000345865 SHISA4Q96DD7 197 aa17.84■□□□□ 0.45
UPF3B-202ENST00000345865 TNKSO95271 1327 aa17.84■□□□□ 0.45
UPF3B-202ENST00000345865 ERICH2A1L162 156 aa17.84■□□□□ 0.45
UPF3B-202ENST00000345865 NLRP12P59046 1061 aa17.84■□□□□ 0.45
UPF3B-202ENST00000345865 NCAPHQ15003 741 aa17.84■□□□□ 0.45
UPF3B-202ENST00000345865 AMIGO3Q86WK7 504 aa17.84■□□□□ 0.45
UPF3B-202ENST00000345865 TIGD1Q96MW7 591 aa17.84■□□□□ 0.45
UPF3B-202ENST00000345865 BPIFA3Q9BQP9 254 aa17.84■□□□□ 0.45
UPF3B-202ENST00000345865 MTA3Q9BTC8 594 aa17.84■□□□□ 0.45
UPF3B-202ENST00000345865 CNTNAP4Q9C0A0 1308 aa17.84■□□□□ 0.45
UPF3B-202ENST00000345865 GTF2E1P29083 439 aaPredicted RBP17.83■□□□□ 0.45
UPF3B-202ENST00000345865 CAVIN4Q5BKX8 364 aa17.83■□□□□ 0.45
UPF3B-202ENST00000345865 FBXO33Q7Z6M2 555 aa17.83■□□□□ 0.45
UPF3B-202ENST00000345865 GRIN1Q05586 938 aa17.83■□□□□ 0.44
UPF3B-202ENST00000345865 NR5A1Q13285 461 aa17.83■□□□□ 0.44
UPF3B-202ENST00000345865 SPECC1Q5M775 1068 aa17.83■□□□□ 0.44
UPF3B-202ENST00000345865 TMTC2Q8N394 836 aa17.83■□□□□ 0.44
UPF3B-202ENST00000345865 ENAHQ8N8S7 591 aaPredicted RBP17.83■□□□□ 0.44
UPF3B-202ENST00000345865 OXER1Q8TDS5 423 aa17.83■□□□□ 0.44
UPF3B-202ENST00000345865 UBAC1Q9BSL1 405 aa17.83■□□□□ 0.44
UPF3B-202ENST00000345865 TUBE1Q9UJT0 475 aa17.83■□□□□ 0.44
UPF3B-202ENST00000345865 PRDM1O75626 825 aa17.82■□□□□ 0.44
UPF3B-202ENST00000345865 FILIP1Q7Z7B0 1213 aa17.82■□□□□ 0.44
UPF3B-202ENST00000345865 FOXP4Q8IVH2 680 aaPredicted RBP17.82■□□□□ 0.44
UPF3B-202ENST00000345865 TRIM22Q8IYM9 498 aa17.82■□□□□ 0.44
UPF3B-202ENST00000345865 JMYQ8N9B5 988 aa17.82■□□□□ 0.44
UPF3B-202ENST00000345865 WASF1Q92558 559 aa17.82■□□□□ 0.44
UPF3B-202ENST00000345865 MYH6P13533 1939 aa17.82■□□□□ 0.44
UPF3B-202ENST00000345865 DEXIO95424 95 aa17.82■□□□□ 0.44
UPF3B-202ENST00000345865 GTF2F1P35269 517 aaKnown RBP eCLIP17.82■□□□□ 0.44
UPF3B-202ENST00000345865 RPS8P62241 208 aaKnown RBP17.82■□□□□ 0.44
UPF3B-202ENST00000345865 PNOCQ13519 176 aa17.82■□□□□ 0.44
UPF3B-202ENST00000345865 ZRSR1Q15695 479 aaKnown RBP17.82■□□□□ 0.44
UPF3B-202ENST00000345865 LONRF3Q496Y0 759 aa17.82■□□□□ 0.44
UPF3B-202ENST00000345865 ESR2Q92731 530 aa17.82■□□□□ 0.44
UPF3B-202ENST00000345865 HSD3B7Q9H2F3 369 aa17.82■□□□□ 0.44
UPF3B-202ENST00000345865 TFCP2L1Q9NZI6 479 aa17.82■□□□□ 0.44
UPF3B-202ENST00000345865 DUOX1Q9NRD9 1551 aa17.82■□□□□ 0.44
UPF3B-202ENST00000345865 CUTAO60888 179 aa17.81■□□□□ 0.44
UPF3B-202ENST00000345865 METTL16Q86W50 562 aaKnown RBP17.81■□□□□ 0.44
UPF3B-202ENST00000345865 NSUN4Q96CB9 384 aaKnown RBP17.81■□□□□ 0.44
UPF3B-202ENST00000345865 NARFQ9UHQ1 456 aa17.81■□□□□ 0.44
UPF3B-202ENST00000345865 RCAN1P53805 252 aa17.81■□□□□ 0.44
UPF3B-202ENST00000345865 CTR9Q6PD62 1173 aa17.81■□□□□ 0.44
UPF3B-202ENST00000345865 SLC51AQ86UW1 340 aa17.81■□□□□ 0.44
UPF3B-202ENST00000345865 C8orf37Q96NL8 207 aa17.81■□□□□ 0.44
UPF3B-202ENST00000345865 BRIP1Q9BX63 1249 aa17.81■□□□□ 0.44
UPF3B-202ENST00000345865 FOXP1Q9H334 677 aaPredicted RBP17.81■□□□□ 0.44
UPF3B-202ENST00000345865 PCDHB6Q9Y5E3 794 aa17.81■□□□□ 0.44
UPF3B-202ENST00000345865 MYH13Q9UKX3 1938 aa17.8■□□□□ 0.44
UPF3B-202ENST00000345865 CCDC196A0A1B0GTZ2 297 aa17.8■□□□□ 0.44
UPF3B-202ENST00000345865 FOXN1O15353 648 aa17.8■□□□□ 0.44
UPF3B-202ENST00000345865 FAM182BQ5T319 152 aa17.8■□□□□ 0.44
UPF3B-202ENST00000345865 C16orf45Q96MC5 204 aaPredicted RBP17.8■□□□□ 0.44
UPF3B-202ENST00000345865 KCNH3Q9ULD8 1083 aa17.8■□□□□ 0.44
UPF3B-202ENST00000345865 hCG_1642624A0A1W2PR95 340 aa17.8■□□□□ 0.44
UPF3B-202ENST00000345865 CCZ1BP86790 482 aa17.8■□□□□ 0.44
UPF3B-202ENST00000345865 CCZ1P86791 482 aaPredicted RBP17.8■□□□□ 0.44
UPF3B-202ENST00000345865 MECOMQ03112 1051 aa17.8■□□□□ 0.44
UPF3B-202ENST00000345865 FUT2Q10981 343 aa17.8■□□□□ 0.44
UPF3B-202ENST00000345865 TXNRD3Q86VQ6 643 aa17.8■□□□□ 0.44
UPF3B-202ENST00000345865 KRI1Q8N9T8 703 aaKnown RBP17.8■□□□□ 0.44
UPF3B-202ENST00000345865 ZSCAN10Q96SZ4 725 aaPredicted RBP17.8■□□□□ 0.44
UPF3B-202ENST00000345865 SETDB2Q96T68 719 aa17.8■□□□□ 0.44
UPF3B-202ENST00000345865 XPO4Q9C0E2 1151 aaKnown RBP17.8■□□□□ 0.44
UPF3B-202ENST00000345865 USP17L12C9JPN9 530 aa17.79■□□□□ 0.44
UPF3B-202ENST00000345865 USP17L21D6R901 530 aa17.79■□□□□ 0.44
UPF3B-202ENST00000345865 RIOK3O14730 519 aaKnown RBP17.79■□□□□ 0.44
UPF3B-202ENST00000345865 RPS6KA4O75676 772 aa17.79■□□□□ 0.44
UPF3B-202ENST00000345865 FGRP09769 529 aa17.79■□□□□ 0.44
UPF3B-202ENST00000345865 SAFBQ15424 915 aaKnown RBP eCLIP17.79■□□□□ 0.44
UPF3B-202ENST00000345865 PKN1Q16512 942 aa17.79■□□□□ 0.44
UPF3B-202ENST00000345865 NLRP3Q96P20 1036 aa17.79■□□□□ 0.44
UPF3B-202ENST00000345865 PDCL3Q9H2J4 239 aa17.79■□□□□ 0.44
UPF3B-202ENST00000345865 IFNKQ9P0W0 207 aa17.79■□□□□ 0.44
UPF3B-202ENST00000345865 FBXO2Q9UK22 296 aaPredicted RBP17.79■□□□□ 0.44
UPF3B-202ENST00000345865 USP27XA6NNY8 438 aa17.78■□□□□ 0.44
UPF3B-202ENST00000345865 PRDX5P30044 214 aa17.78■□□□□ 0.44
UPF3B-202ENST00000345865 VPS72Q15906 364 aa17.78■□□□□ 0.44
UPF3B-202ENST00000345865 KRBA2Q6ZNG9 492 aa17.78■□□□□ 0.44
UPF3B-202ENST00000345865 NBPF5PQ86XG9 351 aaPredicted RBP17.78■□□□□ 0.44
UPF3B-202ENST00000345865 COL24A1Q17RW2 1714 aa17.78■□□□□ 0.44
UPF3B-202ENST00000345865 FAM205CA6NFA0 338 aa17.78■□□□□ 0.44
UPF3B-202ENST00000345865 GNPATO15228 680 aa17.78■□□□□ 0.44
UPF3B-202ENST00000345865 PLEKHA8P1O95397 391 aa17.78■□□□□ 0.44
UPF3B-202ENST00000345865 PTPREP23469 700 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms