RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 RNF217Q8TC41 542 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 KCNG4Q8TDN1 519 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 SSH3Q8TE77 659 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 RPGRIP1Q96KN7 1286 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 FAM210AQ96ND0 272 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 JPH2Q9BR39 696 aaPredicted RBP9.25□□□□□ -0.93
ATG4A-201ENST00000343524 CRACR2AQ9BSW2 395 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 NBPF3Q9H094 633 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 SPG7Q9UQ90 795 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 RBM8AQ9Y5S9 174 aaKnown RBP9.25□□□□□ -0.93
ATG4A-201ENST00000343524 SPATA31A5Q5VU36 1347 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 SPATA31A7Q8IWB4 1347 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 N4BP1O75113 896 aaKnown RBP9.25□□□□□ -0.93
ATG4A-201ENST00000343524 NEBLO76041 1014 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 ZBTB7AO95365 584 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 EZRP15311 586 aaKnown RBP9.25□□□□□ -0.93
ATG4A-201ENST00000343524 CCT5P48643 541 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 DCTN1Q14203 1278 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 DPCR1Q3MIW9 517 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 WLSQ5T9L3 541 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 FBXW10Q5XX13 1052 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 AP1ARQ63HQ0 302 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 ADALQ6DHV7 355 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 ARHGEF25Q86VW2 580 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 IQCA1Q86XH1 822 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 TMEM139Q8IV31 216 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 FAM177A1Q8N128 213 aaPredicted RBP9.25□□□□□ -0.93
ATG4A-201ENST00000343524 RHPN1Q8TCX5 695 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 MAGEC3Q8TD91 643 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 RUBCNQ92622 972 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 PNKPQ96T60 521 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 SH3GL3Q99963 347 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 PAGR1Q9BTK6 254 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 SNRKQ9NRH2 765 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 ODF2LQ9ULJ1 636 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 PNMA6EA0A0J9YXQ4 647 aa9.24□□□□□ -0.93
ATG4A-201ENST00000343524 GOLGA8KD6RF30 607 aa9.24□□□□□ -0.93
ATG4A-201ENST00000343524 EIF3HO15372 352 aaKnown RBP eCLIP9.24□□□□□ -0.93
ATG4A-201ENST00000343524 UBTFL1P0CB47 393 aaPredicted RBP9.24□□□□□ -0.93
ATG4A-201ENST00000343524 BIRC2Q13490 618 aa9.24□□□□□ -0.93
ATG4A-201ENST00000343524 NCAPHQ15003 741 aa9.24□□□□□ -0.93
ATG4A-201ENST00000343524 GPR162Q16538 588 aa9.24□□□□□ -0.93
ATG4A-201ENST00000343524 NBPF6Q5VWK0 638 aa9.24□□□□□ -0.93
ATG4A-201ENST00000343524 KIAA1328Q86T90 577 aa9.24□□□□□ -0.93
ATG4A-201ENST00000343524 NBPF5PQ86XG9 351 aaPredicted RBP9.24□□□□□ -0.93
ATG4A-201ENST00000343524 OTUD6BQ8N6M0 293 aa9.24□□□□□ -0.93
ATG4A-201ENST00000343524 DNAJC5GQ8N7S2 189 aa9.24□□□□□ -0.93
ATG4A-201ENST00000343524 MAP4K1Q92918 833 aa9.24□□□□□ -0.93
ATG4A-201ENST00000343524 EVI5LQ96CN4 794 aa9.24□□□□□ -0.93
ATG4A-201ENST00000343524 FAXDC2Q96IV6 333 aa9.24□□□□□ -0.93
ATG4A-201ENST00000343524 NBPF4Q96M43 638 aa9.24□□□□□ -0.93
ATG4A-201ENST00000343524 SPATS2LQ9NUQ6 558 aaKnown RBP9.24□□□□□ -0.93
ATG4A-201ENST00000343524 GGA2Q9UJY4 613 aa9.24□□□□□ -0.93
ATG4A-201ENST00000343524 CAPN7Q9Y6W3 813 aa9.24□□□□□ -0.93
ATG4A-201ENST00000343524 GOLGA6L7A0A1B0GV03 622 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 TARSL2A2RTX5 802 aaKnown RBP9.23□□□□□ -0.93
ATG4A-201ENST00000343524 GOLGA6CA6NDK9 693 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 KDM6AO15550 1401 aaPredicted RBP9.23□□□□□ -0.93
ATG4A-201ENST00000343524 ZEB2O60315 1214 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 GOLGA6DP0CG33 693 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 SCP2P22307 547 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 VSNL1P62760 191 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 CPLX2Q6PUV4 134 aaKnown RBP9.23□□□□□ -0.93
ATG4A-201ENST00000343524 OLFM4Q6UX06 510 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 IGSF22Q8N9C0 903 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 ZKSCAN4Q969J2 545 aaPredicted RBP9.23□□□□□ -0.93
ATG4A-201ENST00000343524 XAGE2Q96GT9 111 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 CAPS2Q9BXY5 557 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 PDGFDQ9GZP0 370 aaPredicted RBP9.23□□□□□ -0.93
ATG4A-201ENST00000343524 GOLGA6AQ9NYA3 693 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 TTF2Q9UNY4 1162 aaKnown RBP9.23□□□□□ -0.93
ATG4A-201ENST00000343524 ANKRD65E5RJM6 399 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 SLC27A2O14975 620 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 PHACTR2O75167 634 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 YEATS4O95619 227 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 MAP4K4O95819 1239 aaPredicted RBP9.23□□□□□ -0.93
ATG4A-201ENST00000343524 LMOD1P29536 600 aaPredicted RBP9.23□□□□□ -0.93
ATG4A-201ENST00000343524 SLC8A1P32418 973 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 SLC8A3P57103 927 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 IFFO1Q0D2I5 559 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 STIM1Q13586 685 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 PLEKHO1Q53GL0 409 aaPredicted RBP9.23□□□□□ -0.93
ATG4A-201ENST00000343524 CEP85LQ5SZL2 805 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 SMARCC2Q8TAQ2 1214 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 BCAS4Q8TDM0 211 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 CABLES1Q8TDN4 633 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 PANX2Q96RD6 677 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 BATF3Q9NR55 127 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 DACH1Q9UI36 760 aa9.23□□□□□ -0.93
ATG4A-201ENST00000343524 ROBO2Q9HCK4 1378 aa9.22□□□□□ -0.93
ATG4A-201ENST00000343524 ABCA3Q99758 1704 aa9.22□□□□□ -0.93
ATG4A-201ENST00000343524 EDC4Q6P2E9 1401 aaKnown RBP9.22□□□□□ -0.93
ATG4A-201ENST00000343524 LRRIQ3A6PVS8 624 aaPredicted RBP9.22□□□□□ -0.93
ATG4A-201ENST00000343524 MEFVO15553 781 aaPredicted RBP9.22□□□□□ -0.93
ATG4A-201ENST00000343524 SYF2O95926 243 aaKnown RBP9.22□□□□□ -0.93
ATG4A-201ENST00000343524 NBPF7P0C2Y1 421 aaPredicted RBP9.22□□□□□ -0.93
ATG4A-201ENST00000343524 ADD1P35611 737 aaKnown RBP9.22□□□□□ -0.93
ATG4A-201ENST00000343524 IRAK1P51617 712 aa9.22□□□□□ -0.93
ATG4A-201ENST00000343524 SMTNP53814 917 aa9.22□□□□□ -0.93
ATG4A-201ENST00000343524 PTH1RQ03431 593 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms