RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 CHAMP1Q96JM3 812 aa5.37□□□□□ -1.55
CSMD3-203ENST00000343508 TACO1Q9BSH4 297 aaKnown RBP5.37□□□□□ -1.55
CSMD3-203ENST00000343508 SSR1P43307 286 aaKnown RBP5.37□□□□□ -1.55
CSMD3-203ENST00000343508 TBC1D8BQ0IIM8 1120 aa5.37□□□□□ -1.55
CSMD3-203ENST00000343508 PCDHA7Q9UN72 937 aa5.37□□□□□ -1.55
CSMD3-203ENST00000343508 SPAG5Q96R06 1193 aa5.37□□□□□ -1.55
CSMD3-203ENST00000343508 KMT5BQ4FZB7 885 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 UNC5CLQ8IV45 518 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 XAGE3Q8WTP9 111 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 TRMT112Q9UI30 125 aaKnown RBP5.36□□□□□ -1.55
CSMD3-203ENST00000343508 VWA3AA6NCI4 1184 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 E7EVH7 732 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 RNF40O75150 1001 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 RASSF2P50749 326 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 MAP3K9P80192 1104 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 NCOA5Q9HCD5 579 aaKnown RBP5.36□□□□□ -1.55
CSMD3-203ENST00000343508 MTRF1LQ9UGC7 380 aaKnown RBP5.36□□□□□ -1.55
CSMD3-203ENST00000343508 USP5P45974 858 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 SLC9C1Q4G0N8 1177 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 VWA3BQ502W6 1294 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 HOOK3Q86VS8 718 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 PPLO60437 1756 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 ZNF76P36508 570 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 TCERG1LQ5VWI1 586 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 NOX5Q96PH1 765 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 RCOR1Q9UKL0 485 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 SLC4A4Q9Y6R1 1079 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 TCHHQ07283 1943 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 NUTM2BA6NNL0 878 aaPredicted RBP5.36□□□□□ -1.55
CSMD3-203ENST00000343508 NUTM2EB1AL46 878 aaPredicted RBP5.36□□□□□ -1.55
CSMD3-203ENST00000343508 SARNPP82979 210 aaKnown RBP5.36□□□□□ -1.55
CSMD3-203ENST00000343508 LACTBP83111 547 aaPredicted RBP5.36□□□□□ -1.55
CSMD3-203ENST00000343508 CEP85LQ5SZL2 805 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 LRRC45Q96CN5 670 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 CRNKL1Q9BZJ0 848 aaKnown RBP5.36□□□□□ -1.55
CSMD3-203ENST00000343508 IBSPP21815 317 aaPredicted RBP5.36□□□□□ -1.55
CSMD3-203ENST00000343508 BICDL1Q6ZP65 573 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 CCDC85AQ96PX6 553 aaPredicted RBP5.36□□□□□ -1.55
CSMD3-203ENST00000343508 PARD6BQ9BYG5 372 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 A0A087WUV0 522 aaPredicted RBP5.36□□□□□ -1.55
CSMD3-203ENST00000343508 ADGRB2O60241 1585 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 GBP1P32455 592 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 SETDB1Q15047 1291 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 CEP128Q6ZU80 1094 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 JRKLQ9Y4A0 524 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 HOXC9P31274 260 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 DNM2P50570 870 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 RAB11FIP4Q86YS3 637 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 ADAM21Q9UKJ8 722 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 SHPRHQ149N8 1683 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 RNMTO43148 476 aaKnown RBP5.36□□□□□ -1.55
CSMD3-203ENST00000343508 ANXA1P04083 346 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 KRT13P13646 458 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 CTNNBL1Q8WYA6 563 aaPredicted RBP5.36□□□□□ -1.55
CSMD3-203ENST00000343508 PXDNLA1KZ92 1463 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 C11orf57Q6ZUT1 292 aaPredicted RBP5.36□□□□□ -1.55
CSMD3-203ENST00000343508 DZIP1Q86YF9 867 aaKnown RBP5.36□□□□□ -1.55
CSMD3-203ENST00000343508 PI4K2BQ8TCG2 481 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 ALDH8A1Q9H2A2 487 aaPredicted RBP5.36□□□□□ -1.55
CSMD3-203ENST00000343508 C19orf44Q9H6X5 657 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 SNRKQ9NRH2 765 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 FANCLQ9NW38 375 aa5.36□□□□□ -1.55
CSMD3-203ENST00000343508 ERCC5P28715 1186 aaPredicted RBP5.35□□□□□ -1.55
CSMD3-203ENST00000343508 DPCR1Q3MIW9 517 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 ZNF790Q6PG37 636 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 HAUS7Q99871 368 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 PARP2Q9UGN5 583 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 MED23Q9ULK4 1368 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 SLC39A14Q15043 492 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 OR8K1Q8NGG5 319 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 PHF8Q9UPP1 1060 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 PDIA3P30101 505 aaKnown RBP5.35□□□□□ -1.55
CSMD3-203ENST00000343508 HPDP32754 393 aaPredicted RBP5.35□□□□□ -1.55
CSMD3-203ENST00000343508 CCDC6Q16204 474 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 CACNA1FO60840 1977 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 UBE4AQ14139 1066 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 CAPN7Q9Y6W3 813 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 ZMYM6O95789 1325 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 A0A0D9SFI3 127 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 TCP1P17987 556 aaKnown RBP5.35□□□□□ -1.55
CSMD3-203ENST00000343508 RXRAP19793 462 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 ZC3H6P61129 1189 aaKnown RBP5.35□□□□□ -1.55
CSMD3-203ENST00000343508 SPATA1Q5VX52 437 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 TNRQ92752 1358 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 MYO1CO00159 1063 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 GNA11P29992 359 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 PLBD2Q8NHP8 589 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 CDC5LQ99459 802 aaKnown RBP5.35□□□□□ -1.55
CSMD3-203ENST00000343508 PNPLA6Q8IY17 1366 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 CASP8Q14790 479 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 SELENOSQ9BQE4 189 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 EPN1Q9Y6I3 576 aaPredicted RBP5.35□□□□□ -1.55
CSMD3-203ENST00000343508 H7C1D1 291 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 BEND3Q5T5X7 828 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 DHX40Q8IX18 779 aaKnown RBP5.35□□□□□ -1.55
CSMD3-203ENST00000343508 GPAA1O43292 621 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 PPFIA4O75335 1185 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 SV2BQ7L1I2 683 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 CSGALNACT2Q8N6G5 542 aa5.35□□□□□ -1.55
CSMD3-203ENST00000343508 NFATC2IPQ8NCF5 419 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms