RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 HDXQ7Z353 690 aa13.53□□□□□ -0.24
RTN3-203ENST00000341307 ZNF526Q8TF50 670 aaPredicted RBP13.53□□□□□ -0.24
RTN3-203ENST00000341307 HNRNPLLQ8WVV9 542 aaKnown RBP13.53□□□□□ -0.24
RTN3-203ENST00000341307 CAMKK2Q96RR4 588 aa13.53□□□□□ -0.24
RTN3-203ENST00000341307 FAM204AQ9H8W3 233 aa13.53□□□□□ -0.24
RTN3-203ENST00000341307 SUGCTQ9HAC7 445 aa13.53□□□□□ -0.24
RTN3-203ENST00000341307 IMPACTQ9P2X3 320 aa13.53□□□□□ -0.24
RTN3-203ENST00000341307 FBXO3Q9UK99 471 aa13.53□□□□□ -0.24
RTN3-203ENST00000341307 SNX14Q9Y5W7 946 aa13.53□□□□□ -0.24
RTN3-203ENST00000341307 PHACTR2O75167 634 aa13.53□□□□□ -0.24
RTN3-203ENST00000341307 TXLNAP40222 546 aa13.53□□□□□ -0.24
RTN3-203ENST00000341307 AK2P54819 239 aa13.53□□□□□ -0.24
RTN3-203ENST00000341307 KRT85P78386 507 aa13.53□□□□□ -0.24
RTN3-203ENST00000341307 CRYMQ14894 314 aa13.53□□□□□ -0.24
RTN3-203ENST00000341307 FAM71BQ8TC56 605 aa13.53□□□□□ -0.24
RTN3-203ENST00000341307 FAM210AQ96ND0 272 aa13.53□□□□□ -0.24
RTN3-203ENST00000341307 MAP3K15Q6ZN16 1313 aa13.53□□□□□ -0.24
RTN3-203ENST00000341307 CTAGE5O15320 804 aa13.52□□□□□ -0.24
RTN3-203ENST00000341307 CCDC150Q8NCX0 1101 aa13.52□□□□□ -0.24
RTN3-203ENST00000341307 CABS1Q96KC9 395 aa13.52□□□□□ -0.24
RTN3-203ENST00000341307 L1RE1Q9UN81 338 aa13.52□□□□□ -0.24
RTN3-203ENST00000341307 MRFAP1Q9Y605 127 aa13.52□□□□□ -0.24
RTN3-203ENST00000341307 VPS37CA5D8V6 355 aaPredicted RBP13.52□□□□□ -0.25
RTN3-203ENST00000341307 CAND2O75155 1236 aa13.52□□□□□ -0.25
RTN3-203ENST00000341307 MRPL12P52815 198 aaKnown RBP13.52□□□□□ -0.25
RTN3-203ENST00000341307 SETQ01105 290 aaPredicted RBP13.52□□□□□ -0.25
RTN3-203ENST00000341307 WWC2Q6AWC2 1192 aa13.52□□□□□ -0.25
RTN3-203ENST00000341307 GIGYF2Q6Y7W6 1299 aaKnown RBP13.52□□□□□ -0.25
RTN3-203ENST00000341307 ZNF513Q8N8E2 541 aaPredicted RBP13.52□□□□□ -0.25
RTN3-203ENST00000341307 EIF3JO75822 258 aaKnown RBP13.51□□□□□ -0.25
RTN3-203ENST00000341307 ARID4AP29374 1257 aaPredicted RBP13.51□□□□□ -0.25
RTN3-203ENST00000341307 NF2P35240 595 aa13.51□□□□□ -0.25
RTN3-203ENST00000341307 BAG6P46379 1132 aa13.51□□□□□ -0.25
RTN3-203ENST00000341307 TXNRD1Q16881 649 aa13.51□□□□□ -0.25
RTN3-203ENST00000341307 AP1ARQ63HQ0 302 aa13.51□□□□□ -0.25
RTN3-203ENST00000341307 PRPF40BQ6NWY9 871 aaKnown RBP13.51□□□□□ -0.25
RTN3-203ENST00000341307 RUFY2Q8WXA3 655 aa13.51□□□□□ -0.25
RTN3-203ENST00000341307 USP5P45974 858 aa13.51□□□□□ -0.25
RTN3-203ENST00000341307 ADCK5Q3MIX3 580 aa13.51□□□□□ -0.25
RTN3-203ENST00000341307 DDX46Q7L014 1031 aaKnown RBP13.51□□□□□ -0.25
RTN3-203ENST00000341307 CCDC26Q8TAB7 109 aa13.51□□□□□ -0.25
RTN3-203ENST00000341307 GOLGA1Q92805 767 aa13.51□□□□□ -0.25
RTN3-203ENST00000341307 XAGE2Q96GT9 111 aa13.51□□□□□ -0.25
RTN3-203ENST00000341307 ANKZF1Q9H8Y5 726 aa13.51□□□□□ -0.25
RTN3-203ENST00000341307 ODF2LQ9ULJ1 636 aa13.51□□□□□ -0.25
RTN3-203ENST00000341307 TNS1Q9HBL0 1735 aaKnown RBP13.5□□□□□ -0.25
RTN3-203ENST00000341307 MYBL2P10244 700 aa13.5□□□□□ -0.25
RTN3-203ENST00000341307 ATP5JP18859 108 aa13.5□□□□□ -0.25
RTN3-203ENST00000341307 SFPQP23246 707 aaKnown RBP eCLIP13.5□□□□□ -0.25
RTN3-203ENST00000341307 FNTAP49354 379 aa13.5□□□□□ -0.25
RTN3-203ENST00000341307 COL9A3Q14050 684 aaPredicted RBP13.5□□□□□ -0.25
RTN3-203ENST00000341307 DHX8Q14562 1220 aaKnown RBP13.5□□□□□ -0.25
RTN3-203ENST00000341307 ZNF589Q86UQ0 364 aaPredicted RBP13.5□□□□□ -0.25
RTN3-203ENST00000341307 DDX11Q96FC9 970 aa13.5□□□□□ -0.25
RTN3-203ENST00000341307 IRAK4Q9NWZ3 460 aa13.5□□□□□ -0.25
RTN3-203ENST00000341307 LIMCH1Q9UPQ0 1083 aa13.5□□□□□ -0.25
RTN3-203ENST00000341307 A0A087WWV3 80 aa13.5□□□□□ -0.25
RTN3-203ENST00000341307 MYO1FO00160 1098 aa13.5□□□□□ -0.25
RTN3-203ENST00000341307 EYA2O00167 538 aa13.5□□□□□ -0.25
RTN3-203ENST00000341307 IPO7O95373 1038 aaKnown RBP13.5□□□□□ -0.25
RTN3-203ENST00000341307 CCT5P48643 541 aa13.5□□□□□ -0.25
RTN3-203ENST00000341307 CCDC57Q2TAC2 916 aa13.5□□□□□ -0.25
RTN3-203ENST00000341307 WLSQ5T9L3 541 aa13.5□□□□□ -0.25
RTN3-203ENST00000341307 NLRP10Q86W26 655 aa13.5□□□□□ -0.25
RTN3-203ENST00000341307 DZIP3Q86Y13 1208 aaKnown RBP13.5□□□□□ -0.25
RTN3-203ENST00000341307 POTEDQ86YR6 584 aa13.5□□□□□ -0.25
RTN3-203ENST00000341307 ZBTB38Q8NAP3 1195 aaPredicted RBP13.5□□□□□ -0.25
RTN3-203ENST00000341307 THOC1Q96FV9 657 aaKnown RBP13.5□□□□□ -0.25
RTN3-203ENST00000341307 BTAF1O14981 1849 aa13.5□□□□□ -0.25
RTN3-203ENST00000341307 BECN2A8MW95 431 aa13.49□□□□□ -0.25
RTN3-203ENST00000341307 CHUKO15111 745 aa13.49□□□□□ -0.25
RTN3-203ENST00000341307 INPP5BP32019 993 aa13.49□□□□□ -0.25
RTN3-203ENST00000341307 TMC6Q7Z403 805 aa13.49□□□□□ -0.25
RTN3-203ENST00000341307 CCDC83Q8IWF9 413 aa13.49□□□□□ -0.25
RTN3-203ENST00000341307 PGBD1Q96JS3 809 aa13.49□□□□□ -0.25
RTN3-203ENST00000341307 WDR24Q96S15 920 aa13.49□□□□□ -0.25
RTN3-203ENST00000341307 SEC62Q99442 399 aaKnown RBP13.49□□□□□ -0.25
RTN3-203ENST00000341307 BAG1Q99933 345 aaPredicted RBP13.49□□□□□ -0.25
RTN3-203ENST00000341307 PDGFDQ9GZP0 370 aaPredicted RBP13.49□□□□□ -0.25
RTN3-203ENST00000341307 ABCB6Q9NP58 842 aa13.49□□□□□ -0.25
RTN3-203ENST00000341307 PALLDQ8WX93 1383 aa13.49□□□□□ -0.25
RTN3-203ENST00000341307 VWA3AA6NCI4 1184 aa13.49□□□□□ -0.25
RTN3-203ENST00000341307 PCCAP05165 728 aaPredicted RBP13.49□□□□□ -0.25
RTN3-203ENST00000341307 IL15P40933 162 aaPredicted RBP13.49□□□□□ -0.25
RTN3-203ENST00000341307 ATP2B2Q01814 1243 aa13.49□□□□□ -0.25
RTN3-203ENST00000341307 FERMT3Q86UX7 667 aa13.49□□□□□ -0.25
RTN3-203ENST00000341307 CCDC102AQ96A19 550 aa13.49□□□□□ -0.25
RTN3-203ENST00000341307 PNKPQ96T60 521 aa13.49□□□□□ -0.25
RTN3-203ENST00000341307 MPHOSPH8Q99549 860 aa13.49□□□□□ -0.25
RTN3-203ENST00000341307 NUCKS1Q9H1E3 243 aaKnown RBP13.49□□□□□ -0.25
RTN3-203ENST00000341307 RAB21Q9UL25 225 aa13.49□□□□□ -0.25
RTN3-203ENST00000341307 TAF6LQ9Y6J9 622 aa13.49□□□□□ -0.25
RTN3-203ENST00000341307 PLSCR1O15162 318 aa13.48□□□□□ -0.25
RTN3-203ENST00000341307 CCP110O43303 1012 aa13.48□□□□□ -0.25
RTN3-203ENST00000341307 ST3GAL1Q11201 340 aa13.48□□□□□ -0.25
RTN3-203ENST00000341307 TRIM28Q13263 835 aaKnown RBP13.48□□□□□ -0.25
RTN3-203ENST00000341307 ITPK1Q13572 414 aa13.48□□□□□ -0.25
RTN3-203ENST00000341307 STX1AQ16623 288 aa13.48□□□□□ -0.25
RTN3-203ENST00000341307 CCDC129Q6ZRS4 1044 aa13.48□□□□□ -0.25
RTN3-203ENST00000341307 AMIGO3Q86WK7 504 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 262.9 ms