RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 CEP104O60308 925 aa14.22□□□□□ -0.13
USP47-202ENST00000339865 SPDYE2Q495Y8 402 aa14.22□□□□□ -0.13
USP47-202ENST00000339865 LONRF3Q496Y0 759 aa14.22□□□□□ -0.13
USP47-202ENST00000339865 CFAP221Q4G0U5 840 aa14.22□□□□□ -0.13
USP47-202ENST00000339865 PALM2Q8IXS6 379 aa14.22□□□□□ -0.13
USP47-202ENST00000339865 TBC1D32Q96NH3 1257 aa14.22□□□□□ -0.13
USP47-202ENST00000339865 KRT23Q9C075 422 aa14.22□□□□□ -0.13
USP47-202ENST00000339865 FAM170AA1A519 330 aa14.22□□□□□ -0.13
USP47-202ENST00000339865 RPL13P26373 211 aaKnown RBP14.22□□□□□ -0.13
USP47-202ENST00000339865 VPS37BQ9H9H4 285 aa14.22□□□□□ -0.13
USP47-202ENST00000339865 GIMAP4Q9NUV9 329 aa14.22□□□□□ -0.13
USP47-202ENST00000339865 CCDC124Q96CT7 223 aaKnown RBP14.21□□□□□ -0.13
USP47-202ENST00000339865 TRIM55Q9BYV6 548 aa14.21□□□□□ -0.13
USP47-202ENST00000339865 CRNKL1Q9BZJ0 848 aaKnown RBP14.21□□□□□ -0.13
USP47-202ENST00000339865 FBXO2Q9UK22 296 aaPredicted RBP14.21□□□□□ -0.13
USP47-202ENST00000339865 FNDC3AQ9Y2H6 1198 aaKnown RBP14.21□□□□□ -0.13
USP47-202ENST00000339865 WBP4O75554 376 aaKnown RBP14.21□□□□□ -0.13
USP47-202ENST00000339865 SAT1P21673 171 aa14.21□□□□□ -0.13
USP47-202ENST00000339865 PPP2R5AQ15172 486 aa14.21□□□□□ -0.13
USP47-202ENST00000339865 NSMCE1Q8WV22 266 aa14.21□□□□□ -0.13
USP47-202ENST00000339865 POLR3CQ9BUI4 534 aaPredicted RBP14.21□□□□□ -0.13
USP47-202ENST00000339865 ZRANB1Q9UGI0 708 aa14.21□□□□□ -0.13
USP47-202ENST00000339865 PRKAG2Q9UGJ0 569 aa14.21□□□□□ -0.13
USP47-202ENST00000339865 ITM2BQ9Y287 266 aa14.21□□□□□ -0.13
USP47-202ENST00000339865 CCDC159P0C7I6 412 aa14.21□□□□□ -0.13
USP47-202ENST00000339865 DAB2P98082 770 aa14.21□□□□□ -0.13
USP47-202ENST00000339865 GRAMD4Q6IC98 578 aa14.21□□□□□ -0.13
USP47-202ENST00000339865 SCYL3Q8IZE3 742 aa14.21□□□□□ -0.13
USP47-202ENST00000339865 SSH1Q8WYL5 1049 aa14.21□□□□□ -0.13
USP47-202ENST00000339865 N4BP2L2Q92802 583 aaPredicted RBP14.21□□□□□ -0.13
USP47-202ENST00000339865 GPTP24298 496 aa14.21□□□□□ -0.13
USP47-202ENST00000339865 LIN9Q5TKA1 542 aa14.21□□□□□ -0.13
USP47-202ENST00000339865 CHST3Q7LGC8 479 aa14.21□□□□□ -0.13
USP47-202ENST00000339865 HAUS2Q9NVX0 235 aa14.21□□□□□ -0.13
USP47-202ENST00000339865 NPR1P16066 1061 aa14.21□□□□□ -0.14
USP47-202ENST00000339865 DCUN1D2Q6PH85 259 aa14.21□□□□□ -0.14
USP47-202ENST00000339865 TMTC2Q8N394 836 aa14.21□□□□□ -0.14
USP47-202ENST00000339865 BCAS4Q8TDM0 211 aa14.21□□□□□ -0.14
USP47-202ENST00000339865 GNGT1P63211 74 aa14.21□□□□□ -0.14
USP47-202ENST00000339865 MTMR3Q13615 1198 aa14.21□□□□□ -0.14
USP47-202ENST00000339865 TUBB2AQ13885 445 aa14.21□□□□□ -0.14
USP47-202ENST00000339865 TTC19Q6DKK2 380 aaPredicted RBP14.21□□□□□ -0.14
USP47-202ENST00000339865 TUBB2BQ9BVA1 445 aa14.21□□□□□ -0.14
USP47-202ENST00000339865 YY1AP1Q9H869 796 aa14.21□□□□□ -0.14
USP47-202ENST00000339865 CTNNA1P35221 906 aaKnown RBP14.2□□□□□ -0.14
USP47-202ENST00000339865 SND1Q7KZF4 910 aaKnown RBP eCLIP14.2□□□□□ -0.14
USP47-202ENST00000339865 TEX11Q8IYF3 940 aa14.2□□□□□ -0.14
USP47-202ENST00000339865 HAUS1Q96CS2 278 aa14.2□□□□□ -0.14
USP47-202ENST00000339865 GFAPP14136 432 aa14.2□□□□□ -0.14
USP47-202ENST00000339865 C8orf37Q96NL8 207 aa14.2□□□□□ -0.14
USP47-202ENST00000339865 RCN2Q14257 317 aa14.2□□□□□ -0.14
USP47-202ENST00000339865 VWA3BQ502W6 1294 aa14.2□□□□□ -0.14
USP47-202ENST00000339865 C4orf50Q6ZRC1 276 aa14.2□□□□□ -0.14
USP47-202ENST00000339865 KRT82Q9NSB4 513 aa14.2□□□□□ -0.14
USP47-202ENST00000339865 NFE2L2Q16236 605 aa14.2□□□□□ -0.14
USP47-202ENST00000339865 RAB17Q9H0T7 212 aa14.2□□□□□ -0.14
USP47-202ENST00000339865 CABP1Q9NZU7 370 aa14.2□□□□□ -0.14
USP47-202ENST00000339865 GTPBP10A4D1E9 387 aaKnown RBP14.2□□□□□ -0.14
USP47-202ENST00000339865 F13A1P00488 732 aa14.2□□□□□ -0.14
USP47-202ENST00000339865 MYRIPQ8NFW9 859 aa14.2□□□□□ -0.14
USP47-202ENST00000339865 PIK3R5Q8WYR1 880 aa14.2□□□□□ -0.14
USP47-202ENST00000339865 ECHDC1Q9NTX5 307 aa14.2□□□□□ -0.14
USP47-202ENST00000339865 MAP10Q9P2G4 905 aa14.2□□□□□ -0.14
USP47-202ENST00000339865 LDHAL6AQ6ZMR3 332 aa14.2□□□□□ -0.14
USP47-202ENST00000339865 OSCARQ8IYS5 282 aa14.2□□□□□ -0.14
USP47-202ENST00000339865 RSAD2Q8WXG1 361 aa14.2□□□□□ -0.14
USP47-202ENST00000339865 ESR2Q92731 530 aa14.2□□□□□ -0.14
USP47-202ENST00000339865 NAP1L4Q99733 375 aaKnown RBP14.2□□□□□ -0.14
USP47-202ENST00000339865 SKA2Q8WVK7 121 aaPredicted RBP14.19□□□□□ -0.14
USP47-202ENST00000339865 A0A1B0GVL5 298 aa14.19□□□□□ -0.14
USP47-202ENST00000339865 ARHGEF9O43307 516 aa14.19□□□□□ -0.14
USP47-202ENST00000339865 FOXD4Q12950 439 aaPredicted RBP14.19□□□□□ -0.14
USP47-202ENST00000339865 C16orf87Q6PH81 154 aa14.19□□□□□ -0.14
USP47-202ENST00000339865 VWA3AA6NCI4 1184 aa14.19□□□□□ -0.14
USP47-202ENST00000339865 TXNDC2Q86VQ3 553 aa14.19□□□□□ -0.14
USP47-202ENST00000339865 SCOCQ9UIL1 159 aa14.19□□□□□ -0.14
USP47-202ENST00000339865 NUMA1Q14980 2115 aa14.19□□□□□ -0.14
USP47-202ENST00000339865 SLFN5Q08AF3 891 aa14.19□□□□□ -0.14
USP47-202ENST00000339865 GJC2Q5T442 439 aaPredicted RBP14.19□□□□□ -0.14
USP47-202ENST00000339865 CEP70Q8NHQ1 597 aa14.19□□□□□ -0.14
USP47-202ENST00000339865 TTF2Q9UNY4 1162 aaKnown RBP14.19□□□□□ -0.14
USP47-202ENST00000339865 ELP1O95163 1332 aa14.19□□□□□ -0.14
USP47-202ENST00000339865 CALML3P27482 149 aa14.19□□□□□ -0.14
USP47-202ENST00000339865 FBXO41Q8TF61 875 aa14.19□□□□□ -0.14
USP47-202ENST00000339865 CAPS2Q9BXY5 557 aa14.19□□□□□ -0.14
USP47-202ENST00000339865 ANKRD20A4Q4UJ75 823 aa14.18□□□□□ -0.14
USP47-202ENST00000339865 ANKRD20A8PQ5CZ79 823 aa14.18□□□□□ -0.14
USP47-202ENST00000339865 ANKRD20A2Q5SQ80 823 aa14.18□□□□□ -0.14
USP47-202ENST00000339865 ANKRD20A1Q5TYW2 823 aa14.18□□□□□ -0.14
USP47-202ENST00000339865 PEX26Q7Z412 305 aa14.18□□□□□ -0.14
USP47-202ENST00000339865 SECISBP2LQ93073 1101 aaKnown RBP14.18□□□□□ -0.14
USP47-202ENST00000339865 JPH2Q9BR39 696 aaPredicted RBP14.18□□□□□ -0.14
USP47-202ENST00000339865 TRIM56Q9BRZ2 755 aaKnown RBP14.18□□□□□ -0.14
USP47-202ENST00000339865 GINS2Q9Y248 185 aa14.18□□□□□ -0.14
USP47-202ENST00000339865 ZFXP17010 805 aaPredicted RBP14.18□□□□□ -0.14
USP47-202ENST00000339865 NUCB1Q02818 461 aa14.18□□□□□ -0.14
USP47-202ENST00000339865 SLC9C1Q4G0N8 1177 aa14.18□□□□□ -0.14
USP47-202ENST00000339865 TCP11Q8WWU5 503 aa14.18□□□□□ -0.14
USP47-202ENST00000339865 PARP2Q9UGN5 583 aa14.18□□□□□ -0.14
USP47-202ENST00000339865 ST5P78524 1137 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms