RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 NLRX1Q86UT6 975 aa11.59□□□□□ -0.55
USP54-201ENST00000339859 FAM114A1Q8IWE2 563 aa11.59□□□□□ -0.55
USP54-201ENST00000339859 ZNF34Q8IZ26 560 aa11.59□□□□□ -0.55
USP54-201ENST00000339859 SDR42E1Q8WUS8 393 aa11.59□□□□□ -0.55
USP54-201ENST00000339859 MRPL11Q9Y3B7 192 aaKnown RBP11.59□□□□□ -0.55
USP54-201ENST00000339859 NBPF26B4DH59 902 aa11.58□□□□□ -0.55
USP54-201ENST00000339859 TOP1P11387 765 aaKnown RBP11.58□□□□□ -0.55
USP54-201ENST00000339859 MYCLP12524 364 aaPredicted RBP11.58□□□□□ -0.55
USP54-201ENST00000339859 TGFB2P61812 414 aa11.58□□□□□ -0.55
USP54-201ENST00000339859 NBPF10Q6P3W6 841 aaKnown RBP11.58□□□□□ -0.55
USP54-201ENST00000339859 NBPF15Q8N660 670 aa11.58□□□□□ -0.55
USP54-201ENST00000339859 SEPT11Q9NVA2 429 aaKnown RBP11.58□□□□□ -0.55
USP54-201ENST00000339859 ANO10Q9NW15 660 aa11.58□□□□□ -0.55
USP54-201ENST00000339859 PI4KBQ9UBF8 816 aa11.58□□□□□ -0.55
USP54-201ENST00000339859 MED23Q9ULK4 1368 aa11.58□□□□□ -0.56
USP54-201ENST00000339859 BRAPQ7Z569 592 aa11.58□□□□□ -0.56
USP54-201ENST00000339859 IDEP14735 1019 aa11.58□□□□□ -0.56
USP54-201ENST00000339859 RXRAP19793 462 aa11.58□□□□□ -0.56
USP54-201ENST00000339859 ZSCAN22P10073 491 aaPredicted RBP11.58□□□□□ -0.56
USP54-201ENST00000339859 FCHSD1Q86WN1 690 aa11.58□□□□□ -0.56
USP54-201ENST00000339859 GPR101Q96P66 508 aaPredicted RBP11.58□□□□□ -0.56
USP54-201ENST00000339859 DBNLQ9UJU6 430 aaKnown RBP11.58□□□□□ -0.56
USP54-201ENST00000339859 IGKV5-2P06315 115 aa11.58□□□□□ -0.56
USP54-201ENST00000339859 USH1GQ495M9 461 aa11.58□□□□□ -0.56
USP54-201ENST00000339859 LLPHQ9BRT6 129 aaKnown RBP11.57□□□□□ -0.56
USP54-201ENST00000339859 HACL1Q9UJ83 578 aa11.57□□□□□ -0.56
USP54-201ENST00000339859 PNMA3Q9UL41 463 aa11.57□□□□□ -0.56
USP54-201ENST00000339859 PPFIA3O75145 1194 aa11.57□□□□□ -0.56
USP54-201ENST00000339859 ADD2P35612 726 aa11.57□□□□□ -0.56
USP54-201ENST00000339859 POLA2Q14181 598 aa11.57□□□□□ -0.56
USP54-201ENST00000339859 NSMFQ6X4W1 530 aa11.57□□□□□ -0.56
USP54-201ENST00000339859 CELF1Q92879 486 aaKnown RBP11.57□□□□□ -0.56
USP54-201ENST00000339859 ZNF341Q9BYN7 854 aa11.57□□□□□ -0.56
USP54-201ENST00000339859 GTPBP4Q9BZE4 634 aaKnown RBP11.57□□□□□ -0.56
USP54-201ENST00000339859 CD209Q9NNX6 404 aa11.57□□□□□ -0.56
USP54-201ENST00000339859 HOMER2Q9NSB8 354 aa11.57□□□□□ -0.56
USP54-201ENST00000339859 DDX19AQ9NUU7 478 aaKnown RBP11.57□□□□□ -0.56
USP54-201ENST00000339859 ZNRF3Q9ULT6 936 aa11.57□□□□□ -0.56
USP54-201ENST00000339859 NCAPG2Q86XI2 1143 aa11.57□□□□□ -0.56
USP54-201ENST00000339859 ATP6V0A2Q9Y487 856 aa11.57□□□□□ -0.56
USP54-201ENST00000339859 RPAP1Q9BWH6 1393 aaPredicted RBP11.57□□□□□ -0.56
USP54-201ENST00000339859 ZNF142P52746 1687 aaPredicted RBP11.57□□□□□ -0.56
USP54-201ENST00000339859 DDAH1O94760 285 aa11.57□□□□□ -0.56
USP54-201ENST00000339859 KRT25Q7Z3Z0 450 aa11.57□□□□□ -0.56
USP54-201ENST00000339859 CCAR2Q8N163 923 aaKnown RBP11.57□□□□□ -0.56
USP54-201ENST00000339859 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.57□□□□□ -0.56
USP54-201ENST00000339859 FLOT1O75955 427 aa11.57□□□□□ -0.56
USP54-201ENST00000339859 DPEP1P16444 411 aa11.57□□□□□ -0.56
USP54-201ENST00000339859 MECOMQ03112 1051 aa11.57□□□□□ -0.56
USP54-201ENST00000339859 AZI2Q9H6S1 392 aa11.57□□□□□ -0.56
USP54-201ENST00000339859 E7EWF7 191 aa11.56□□□□□ -0.56
USP54-201ENST00000339859 NT5C2P49902 561 aa11.56□□□□□ -0.56
USP54-201ENST00000339859 TBC1D10BQ4KMP7 808 aaPredicted RBP11.56□□□□□ -0.56
USP54-201ENST00000339859 FOXP4Q8IVH2 680 aaPredicted RBP11.56□□□□□ -0.56
USP54-201ENST00000339859 SUGT1Q9Y2Z0 365 aa11.56□□□□□ -0.56
USP54-201ENST00000339859 FAM13AO94988 1023 aa11.56□□□□□ -0.56
USP54-201ENST00000339859 GNPTABQ3T906 1256 aa11.56□□□□□ -0.56
USP54-201ENST00000339859 COL23A1Q86Y22 540 aaPredicted RBP11.56□□□□□ -0.56
USP54-201ENST00000339859 MCM7P33993 719 aa11.56□□□□□ -0.56
USP54-201ENST00000339859 CCDC183Q5T5S1 534 aa11.56□□□□□ -0.56
USP54-201ENST00000339859 ARHGEF16Q5VV41 709 aa11.56□□□□□ -0.56
USP54-201ENST00000339859 ZBTB21Q9ULJ3 1066 aa11.56□□□□□ -0.56
USP54-201ENST00000339859 SNX14Q9Y5W7 946 aa11.56□□□□□ -0.56
USP54-201ENST00000339859 CA8P35219 290 aa11.56□□□□□ -0.56
USP54-201ENST00000339859 SF3B3Q15393 1217 aaKnown RBP11.56□□□□□ -0.56
USP54-201ENST00000339859 SLFN13Q68D06 897 aa11.56□□□□□ -0.56
USP54-201ENST00000339859 TBC1D2Q9BYX2 928 aa11.56□□□□□ -0.56
USP54-201ENST00000339859 NOM1Q5C9Z4 860 aaKnown RBP11.56□□□□□ -0.56
USP54-201ENST00000339859 DTHD1Q6ZMT9 781 aa11.56□□□□□ -0.56
USP54-201ENST00000339859 TICAM2Q86XR7 235 aa11.56□□□□□ -0.56
USP54-201ENST00000339859 GOLGA6L1Q8N7Z2 621 aa11.56□□□□□ -0.56
USP54-201ENST00000339859 RNF214Q8ND24 703 aa11.56□□□□□ -0.56
USP54-201ENST00000339859 TTLL1O95922 423 aa11.55□□□□□ -0.56
USP54-201ENST00000339859 NASPP49321 788 aaPredicted RBP11.55□□□□□ -0.56
USP54-201ENST00000339859 ZMYM1Q5SVZ6 1142 aa11.55□□□□□ -0.56
USP54-201ENST00000339859 CEMIPQ8WUJ3 1361 aa11.55□□□□□ -0.56
USP54-201ENST00000339859 SP4Q02446 784 aa11.55□□□□□ -0.56
USP54-201ENST00000339859 SNX21Q969T3 373 aa11.55□□□□□ -0.56
USP54-201ENST00000339859 STAP2Q9UGK3 403 aa11.55□□□□□ -0.56
USP54-201ENST00000339859 V9GY48 417 aaPredicted RBP11.55□□□□□ -0.56
USP54-201ENST00000339859 M0QZ92 97 aa11.55□□□□□ -0.56
USP54-201ENST00000339859 KIF4BQ2VIQ3 1234 aa11.55□□□□□ -0.56
USP54-201ENST00000339859 HAUS3Q68CZ6 603 aa11.55□□□□□ -0.56
USP54-201ENST00000339859 KANSL2Q9H9L4 492 aa11.55□□□□□ -0.56
USP54-201ENST00000339859 RGS12O14924 1447 aa11.55□□□□□ -0.56
USP54-201ENST00000339859 PXDNLA1KZ92 1463 aa11.55□□□□□ -0.56
USP54-201ENST00000339859 CAMK4Q16566 473 aa11.55□□□□□ -0.56
USP54-201ENST00000339859 GCOM1H8Y6P7 765 aaPredicted RBP11.55□□□□□ -0.56
USP54-201ENST00000339859 POLR2MP0CAP2 368 aa11.55□□□□□ -0.56
USP54-201ENST00000339859 HSPD1P10809 573 aaKnown RBP11.55□□□□□ -0.56
USP54-201ENST00000339859 KCTD2Q14681 263 aa11.55□□□□□ -0.56
USP54-201ENST00000339859 CCDC40Q4G0X9 1142 aa11.55□□□□□ -0.56
USP54-201ENST00000339859 INTS5Q6P9B9 1019 aaKnown RBP11.55□□□□□ -0.56
USP54-201ENST00000339859 CFBP00751 764 aa11.54□□□□□ -0.56
USP54-201ENST00000339859 EDC3Q96F86 508 aaKnown RBP11.54□□□□□ -0.56
USP54-201ENST00000339859 SERPINB13Q9UIV8 391 aa11.54□□□□□ -0.56
USP54-201ENST00000339859 MYO6Q9UM54 1294 aa11.54□□□□□ -0.56
USP54-201ENST00000339859 MED1Q15648 1581 aaPredicted RBP11.54□□□□□ -0.56
USP54-201ENST00000339859 PLSCR1O15162 318 aa11.54□□□□□ -0.56
USP54-201ENST00000339859 DYNLL1P63167 89 aaKnown RBP11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms