RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 SSC5DA1L4H1 1573 aa26.38■■□□□ 1.81
SDC3-202ENST00000339394 FAM196BA6NMK8 535 aa26.38■■□□□ 1.81
SDC3-202ENST00000339394 ZNF213O14771 459 aa26.38■■□□□ 1.81
SDC3-202ENST00000339394 TBC1D12O60347 775 aa26.38■■□□□ 1.81
SDC3-202ENST00000339394 NF2P35240 595 aa26.38■■□□□ 1.81
SDC3-202ENST00000339394 IMMTQ16891 758 aaKnown RBP26.38■■□□□ 1.81
SDC3-202ENST00000339394 CRACR2BQ8N4Y2 399 aaPredicted RBP26.38■■□□□ 1.81
SDC3-202ENST00000339394 DNAJC18Q9H819 358 aa26.38■■□□□ 1.81
SDC3-202ENST00000339394 HERC5Q9UII4 1024 aaKnown RBP26.38■■□□□ 1.81
SDC3-202ENST00000339394 ANAPC4Q9UJX5 808 aa26.38■■□□□ 1.81
SDC3-202ENST00000339394 FZD1Q9UP38 647 aa26.38■■□□□ 1.81
SDC3-202ENST00000339394 DDX60LQ5H9U9 1706 aaKnown RBP26.38■■□□□ 1.81
SDC3-202ENST00000339394 PASKQ96RG2 1323 aa26.38■■□□□ 1.81
SDC3-202ENST00000339394 EIF5BO60841 1220 aaKnown RBP26.37■■□□□ 1.81
SDC3-202ENST00000339394 NECTIN1Q15223 517 aa26.37■■□□□ 1.81
SDC3-202ENST00000339394 STK11IPQ8N1F8 1099 aa26.37■■□□□ 1.81
SDC3-202ENST00000339394 USP26Q9BXU7 913 aa26.37■■□□□ 1.81
SDC3-202ENST00000339394 CELF2O95319 508 aaKnown RBP26.37■■□□□ 1.81
SDC3-202ENST00000339394 CTDSPL2Q05D32 466 aa26.37■■□□□ 1.81
SDC3-202ENST00000339394 PRKG1Q13976 671 aa26.37■■□□□ 1.81
SDC3-202ENST00000339394 DCAF15Q66K64 600 aa26.37■■□□□ 1.81
SDC3-202ENST00000339394 TRIM34Q9BYJ4 488 aa26.37■■□□□ 1.81
SDC3-202ENST00000339394 XPO5Q9HAV4 1204 aaKnown RBP eCLIP26.37■■□□□ 1.81
SDC3-202ENST00000339394 NAV1Q8NEY1 1877 aa26.36■■□□□ 1.81
SDC3-202ENST00000339394 EPB41L2O43491 1005 aaKnown RBP26.36■■□□□ 1.81
SDC3-202ENST00000339394 CYP21A2P08686 494 aa26.36■■□□□ 1.81
SDC3-202ENST00000339394 CST9Q5W186 159 aa26.36■■□□□ 1.81
SDC3-202ENST00000339394 SLC44A5Q8NCS7 719 aa26.36■■□□□ 1.81
SDC3-202ENST00000339394 PPP1R12BO60237 982 aaPredicted RBP26.35■■□□□ 1.81
SDC3-202ENST00000339394 C16orf86Q6ZW13 317 aa26.35■■□□□ 1.81
SDC3-202ENST00000339394 NBPF3Q9H094 633 aa26.35■■□□□ 1.81
SDC3-202ENST00000339394 ROBO3Q96MS0 1386 aa26.35■■□□□ 1.81
SDC3-202ENST00000339394 BAZ2AQ9UIF9 1905 aaKnown RBP26.35■■□□□ 1.81
SDC3-202ENST00000339394 USP2O75604 605 aaPredicted RBP26.34■■□□□ 1.81
SDC3-202ENST00000339394 SLC3A2P08195 630 aaKnown RBP26.34■■□□□ 1.81
SDC3-202ENST00000339394 SHMT1P34896 483 aa26.33■■□□□ 1.81
SDC3-202ENST00000339394 CDK8P49336 464 aa26.33■■□□□ 1.81
SDC3-202ENST00000339394 CREB3L3Q68CJ9 461 aa26.33■■□□□ 1.81
SDC3-202ENST00000339394 ZNF341Q9BYN7 854 aa26.33■■□□□ 1.81
SDC3-202ENST00000339394 BACH2Q9BYV9 841 aa26.33■■□□□ 1.81
SDC3-202ENST00000339394 INCENPQ9NQS7 918 aa26.33■■□□□ 1.81
SDC3-202ENST00000339394 SWAP70Q9UH65 585 aa26.33■■□□□ 1.81
SDC3-202ENST00000339394 TAOK2Q9UL54 1235 aa26.33■■□□□ 1.81
SDC3-202ENST00000339394 MYH1P12882 1939 aa26.33■■□□□ 1.81
SDC3-202ENST00000339394 PHF20L1A8MW92 1017 aa26.33■■□□□ 1.8
SDC3-202ENST00000339394 SLC27A2O14975 620 aa26.33■■□□□ 1.8
SDC3-202ENST00000339394 TATDN1Q6P1N9 297 aa26.33■■□□□ 1.8
SDC3-202ENST00000339394 TBC1D10CQ8IV04 446 aa26.33■■□□□ 1.8
SDC3-202ENST00000339394 KLRG1Q96E93 195 aa26.33■■□□□ 1.8
SDC3-202ENST00000339394 TACC3Q9Y6A5 838 aa26.33■■□□□ 1.8
SDC3-202ENST00000339394 TAF6LQ9Y6J9 622 aa26.33■■□□□ 1.8
SDC3-202ENST00000339394 PRDM1O75626 825 aa26.32■■□□□ 1.8
SDC3-202ENST00000339394 HSPA4P34932 840 aa26.32■■□□□ 1.8
SDC3-202ENST00000339394 PDE4BQ07343 736 aa26.32■■□□□ 1.8
SDC3-202ENST00000339394 TTLL12Q14166 644 aaPredicted RBP26.32■■□□□ 1.8
SDC3-202ENST00000339394 MOB2Q70IA6 237 aa26.32■■□□□ 1.8
SDC3-202ENST00000339394 ANGEL1Q9UNK9 670 aaKnown RBP26.32■■□□□ 1.8
SDC3-202ENST00000339394 FGRP09769 529 aa26.31■■□□□ 1.8
SDC3-202ENST00000339394 AKNAD1Q5T1N1 836 aa26.31■■□□□ 1.8
SDC3-202ENST00000339394 MKNK2Q9HBH9 465 aa26.31■■□□□ 1.8
SDC3-202ENST00000339394 GBA2Q9HCG7 927 aaPredicted RBP26.31■■□□□ 1.8
SDC3-202ENST00000339394 ZNF112Q9UJU3 913 aa26.31■■□□□ 1.8
SDC3-202ENST00000339394 RRP1BQ14684 758 aaKnown RBP26.3■■□□□ 1.8
SDC3-202ENST00000339394 MAP3K11Q16584 847 aa26.3■■□□□ 1.8
SDC3-202ENST00000339394 RNF20Q5VTR2 975 aa26.3■■□□□ 1.8
SDC3-202ENST00000339394 MFSD6Q6ZSS7 791 aa26.3■■□□□ 1.8
SDC3-202ENST00000339394 STAG1Q8WVM7 1258 aa26.3■■□□□ 1.8
SDC3-202ENST00000339394 WRNIP1Q96S55 665 aa26.3■■□□□ 1.8
SDC3-202ENST00000339394 ZNF287Q9HBT7 754 aa26.3■■□□□ 1.8
SDC3-202ENST00000339394 IREB2P48200 963 aaKnown RBP26.29■■□□□ 1.8
SDC3-202ENST00000339394 FKBP1BP68106 108 aa26.29■■□□□ 1.8
SDC3-202ENST00000339394 ARMC9Q7Z3E5 817 aa26.29■■□□□ 1.8
SDC3-202ENST00000339394 C2orf69Q8N8R5 385 aa26.29■■□□□ 1.8
SDC3-202ENST00000339394 DDX55Q8NHQ9 600 aaKnown RBP eCLIP26.29■■□□□ 1.8
SDC3-202ENST00000339394 DDX52Q9Y2R4 599 aaKnown RBP eCLIP26.29■■□□□ 1.83e-6■■■■□ 25.7
SDC3-202ENST00000339394 SIPA1L1O43166 1804 aa26.29■■□□□ 1.8
SDC3-202ENST00000339394 CERKLQ49MI3 558 aaPredicted RBP26.29■■□□□ 1.8
SDC3-202ENST00000339394 RASEFQ8IZ41 740 aa26.29■■□□□ 1.8
SDC3-202ENST00000339394 RNF41Q9H4P4 317 aaPredicted RBP26.29■■□□□ 1.8
SDC3-202ENST00000339394 INPP5BP32019 993 aa26.28■■□□□ 1.8
SDC3-202ENST00000339394 KCNB2Q92953 911 aa26.28■■□□□ 1.8
SDC3-202ENST00000339394 ZKSCAN4Q969J2 545 aaPredicted RBP26.28■■□□□ 1.8
SDC3-202ENST00000339394 E7EWF7 191 aa26.27■■□□□ 1.8
SDC3-202ENST00000339394 UBE2Q2LH0YL09 131 aa26.27■■□□□ 1.8
SDC3-202ENST00000339394 PCP11498 1178 aaKnown RBP26.27■■□□□ 1.8
SDC3-202ENST00000339394 ZKSCAN1P17029 563 aaPredicted RBP26.27■■□□□ 1.8
SDC3-202ENST00000339394 RASA1P20936 1047 aa26.27■■□□□ 1.8
SDC3-202ENST00000339394 ORC4O43929 436 aa26.26■■□□□ 1.79
SDC3-202ENST00000339394 CTNND1O60716 968 aaKnown RBP26.26■■□□□ 1.79
SDC3-202ENST00000339394 GDF11O95390 407 aa26.26■■□□□ 1.79
SDC3-202ENST00000339394 MCCP23508 829 aa26.26■■□□□ 1.79
SDC3-202ENST00000339394 CAP2P40123 477 aa26.26■■□□□ 1.79
SDC3-202ENST00000339394 MAP3K9P80192 1104 aa26.26■■□□□ 1.79
SDC3-202ENST00000339394 TSGA10IPQ3SY00 556 aa26.26■■□□□ 1.79
SDC3-202ENST00000339394 PPP1R3FQ6ZSY5 799 aaPredicted RBP26.26■■□□□ 1.79
SDC3-202ENST00000339394 STOX1Q6ZVD7 989 aa26.26■■□□□ 1.79
SDC3-202ENST00000339394 ZNF444Q8N0Y2 327 aaPredicted RBP26.26■■□□□ 1.79
SDC3-202ENST00000339394 TOMM22Q9NS69 142 aa26.26■■□□□ 1.79
SDC3-202ENST00000339394 NEDD4P46934 1319 aa26.26■■□□□ 1.79
SDC3-202ENST00000339394 SHROOM1Q2M3G4 852 aaPredicted RBP26.25■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms