RNA–Protein interactions for RNA: ENST00000334895.9

TPM1-204, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,637 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-204ENST00000334895 UPF3BQ9BZI7 483 aaKnown RBP25.51■■□□□ 1.67
TPM1-204ENST00000334895 GGA3Q9NZ52 723 aa25.51■■□□□ 1.67
TPM1-204ENST00000334895 PGAP2Q9UHJ9 254 aa25.51■■□□□ 1.67
TPM1-204ENST00000334895 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25.51■■□□□ 1.67
TPM1-204ENST00000334895 NEK1Q96PY6 1258 aa25.5■■□□□ 1.67
TPM1-204ENST00000334895 TMEM39BQ9GZU3 492 aa25.5■■□□□ 1.67
TPM1-204ENST00000334895 DHX36Q9H2U1 1008 aaKnown RBP25.5■■□□□ 1.67
TPM1-204ENST00000334895 ZSWIM6Q9HCJ5 1215 aa25.5■■□□□ 1.67
TPM1-204ENST00000334895 POTEIP0CG38 1075 aa25.49■■□□□ 1.67
TPM1-204ENST00000334895 POTEJP0CG39 1038 aa25.49■■□□□ 1.67
TPM1-204ENST00000334895 SLURP2P0DP57 97 aa25.49■■□□□ 1.67
TPM1-204ENST00000334895 CASTP20810 708 aaKnown RBP25.49■■□□□ 1.67
TPM1-204ENST00000334895 GABPAQ06546 454 aa25.49■■□□□ 1.67
TPM1-204ENST00000334895 RABEP1Q15276 862 aa25.49■■□□□ 1.67
TPM1-204ENST00000334895 MFSD6Q6ZSS7 791 aa25.49■■□□□ 1.67
TPM1-204ENST00000334895 USP50Q70EL3 339 aaPredicted RBP25.49■■□□□ 1.67
TPM1-204ENST00000334895 TTC6Q86TZ1 520 aa25.49■■□□□ 1.67
TPM1-204ENST00000334895 SLC44A5Q8NCS7 719 aa25.49■■□□□ 1.67
TPM1-204ENST00000334895 RASA3Q14644 834 aa25.48■■□□□ 1.67
TPM1-204ENST00000334895 EAPPQ56P03 285 aaPredicted RBP25.48■■□□□ 1.67
TPM1-204ENST00000334895 PRDM1O75626 825 aa25.48■■□□□ 1.67
TPM1-204ENST00000334895 PSMA5P28066 241 aa25.48■■□□□ 1.67
TPM1-204ENST00000334895 C16orf86Q6ZW13 317 aa25.48■■□□□ 1.67
TPM1-204ENST00000334895 ZSCAN29Q8IWY8 852 aaPredicted RBP25.48■■□□□ 1.67
TPM1-204ENST00000334895 MB21D2Q8IYB1 491 aaPredicted RBP25.48■■□□□ 1.67
TPM1-204ENST00000334895 TNFAIP1Q13829 316 aa25.47■■□□□ 1.67
TPM1-204ENST00000334895 NCOA7Q8NI08 942 aa25.47■■□□□ 1.67
TPM1-204ENST00000334895 TEPSINQ96N21 525 aa25.47■■□□□ 1.67
TPM1-204ENST00000334895 EHD4Q9H223 541 aa25.47■■□□□ 1.67
TPM1-204ENST00000334895 RNF41Q9H4P4 317 aaPredicted RBP25.47■■□□□ 1.67
TPM1-204ENST00000334895 DNAJC18Q9H819 358 aa25.47■■□□□ 1.67
TPM1-204ENST00000334895 B4E1Z4 1266 aa25.46■■□□□ 1.67
TPM1-204ENST00000334895 HLA-DOAP06340 250 aa25.46■■□□□ 1.67
TPM1-204ENST00000334895 SLC3A2P08195 630 aaKnown RBP25.46■■□□□ 1.67
TPM1-204ENST00000334895 TNNI2P48788 182 aa25.46■■□□□ 1.67
TPM1-204ENST00000334895 BLOC1S2Q6QNY1 142 aa25.46■■□□□ 1.67
TPM1-204ENST00000334895 RUFY3Q7L099 469 aa25.46■■□□□ 1.67
TPM1-204ENST00000334895 APOBEC3FQ8IUX4 373 aaKnown RBP25.46■■□□□ 1.67
TPM1-204ENST00000334895 DEFB129Q9H1M3 183 aa25.46■■□□□ 1.67
TPM1-204ENST00000334895 PI4KBQ9UBF8 816 aa25.46■■□□□ 1.67
TPM1-204ENST00000334895 SERPINB13Q9UIV8 391 aa25.46■■□□□ 1.67
TPM1-204ENST00000334895 PITPNM2Q9BZ72 1349 aa25.46■■□□□ 1.67
TPM1-204ENST00000334895 ORC4O43929 436 aa25.45■■□□□ 1.67
TPM1-204ENST00000334895 RPS6KB1P23443 525 aa25.45■■□□□ 1.67
TPM1-204ENST00000334895 NEK4P51957 841 aa25.45■■□□□ 1.67
TPM1-204ENST00000334895 CSRNP1Q96S65 589 aa25.45■■□□□ 1.67
TPM1-204ENST00000334895 PCP11498 1178 aaKnown RBP25.45■■□□□ 1.66
TPM1-204ENST00000334895 CDK8P49336 464 aa25.45■■□□□ 1.66
TPM1-204ENST00000334895 ANTXR2P58335 489 aa25.45■■□□□ 1.66
TPM1-204ENST00000334895 RRP12Q5JTH9 1297 aaKnown RBP25.45■■□□□ 1.66
TPM1-204ENST00000334895 PNMA8AQ86V59 439 aaPredicted RBP25.45■■□□□ 1.66
TPM1-204ENST00000334895 METTL16Q86W50 562 aaKnown RBP25.45■■□□□ 1.66
TPM1-204ENST00000334895 TCEANC2Q96MN5 208 aa25.45■■□□□ 1.66
TPM1-204ENST00000334895 TTC14Q96N46 770 aa25.45■■□□□ 1.66
TPM1-204ENST00000334895 CNNM2Q9H8M5 875 aa25.45■■□□□ 1.66
TPM1-204ENST00000334895 CYP46A1Q9Y6A2 500 aa25.45■■□□□ 1.66
TPM1-204ENST00000334895 EXOSC10Q01780 885 aaKnown RBP25.44■■□□□ 1.66
TPM1-204ENST00000334895 PDE4BQ07343 736 aa25.44■■□□□ 1.66
TPM1-204ENST00000334895 TRDNQ13061 729 aa25.44■■□□□ 1.66
TPM1-204ENST00000334895 CYB5R4Q7L1T6 521 aa25.44■■□□□ 1.66
TPM1-204ENST00000334895 RALYLQ86SE5 291 aaKnown RBP25.44■■□□□ 1.66
TPM1-204ENST00000334895 KRT23Q9C075 422 aa25.44■■□□□ 1.66
TPM1-204ENST00000334895 TOMM22Q9NS69 142 aa25.44■■□□□ 1.66
TPM1-204ENST00000334895 FAM196BA6NMK8 535 aa25.43■■□□□ 1.66
TPM1-204ENST00000334895 KDM4AO75164 1064 aa25.43■■□□□ 1.66
TPM1-204ENST00000334895 TOMM70O94826 608 aa25.43■■□□□ 1.66
TPM1-204ENST00000334895 CD2BP2O95400 341 aaKnown RBP25.43■■□□□ 1.66
TPM1-204ENST00000334895 SHMT1P34896 483 aa25.43■■□□□ 1.66
TPM1-204ENST00000334895 DHX32Q7L7V1 743 aaKnown RBP25.43■■□□□ 1.66
TPM1-204ENST00000334895 CHST3Q7LGC8 479 aa25.43■■□□□ 1.66
TPM1-204ENST00000334895 MYH8P13535 1937 aa25.43■■□□□ 1.66
TPM1-204ENST00000334895 HMGB1P09429 215 aaKnown RBP25.42■■□□□ 1.66
TPM1-204ENST00000334895 RASA1P20936 1047 aa25.42■■□□□ 1.66
TPM1-204ENST00000334895 FOXP4Q8IVH2 680 aaPredicted RBP25.42■■□□□ 1.66
TPM1-204ENST00000334895 ZC3H15Q8WU90 426 aaKnown RBP25.42■■□□□ 1.66
TPM1-204ENST00000334895 ZSWIM5Q9P217 1185 aa25.42■■□□□ 1.66
TPM1-204ENST00000334895 ESR2Q92731 530 aa25.41■■□□□ 1.66
TPM1-204ENST00000334895 LRRC2Q9BYS8 371 aa25.41■■□□□ 1.66
TPM1-204ENST00000334895 MKNK2Q9HBH9 465 aa25.41■■□□□ 1.66
TPM1-204ENST00000334895 SWAP70Q9UH65 585 aa25.41■■□□□ 1.66
TPM1-204ENST00000334895 CLEC11AQ9Y240 323 aa25.41■■□□□ 1.66
TPM1-204ENST00000334895 PRC1O43663 620 aa25.4■■□□□ 1.66
TPM1-204ENST00000334895 MCM5P33992 734 aa25.4■■□□□ 1.66
TPM1-204ENST00000334895 PRAMEF18Q5VWM3 479 aa25.4■■□□□ 1.66
TPM1-204ENST00000334895 LDHDQ86WU2 507 aa25.4■■□□□ 1.66
TPM1-204ENST00000334895 CRACR2BQ8N4Y2 399 aaPredicted RBP25.4■■□□□ 1.66
TPM1-204ENST00000334895 DCPSQ96C86 337 aaKnown RBP25.4■■□□□ 1.66
TPM1-204ENST00000334895 PDRG1Q9NUG6 133 aa25.4■■□□□ 1.66
TPM1-204ENST00000334895 RANBP6O60518 1105 aaKnown RBP25.39■■□□□ 1.66
TPM1-204ENST00000334895 FAM47AQ5JRC9 791 aa25.39■■□□□ 1.66
TPM1-204ENST00000334895 NBPF12Q5TAG4 269 aaPredicted RBP25.39■■□□□ 1.66
TPM1-204ENST00000334895 DLK2Q6UY11 383 aa25.39■■□□□ 1.66
TPM1-204ENST00000334895 PPP2R3BQ9Y5P8 575 aa25.39■■□□□ 1.66
TPM1-204ENST00000334895 WDR19Q8NEZ3 1342 aa25.38■■□□□ 1.65
TPM1-204ENST00000334895 ADM5C9JUS6 153 aa25.38■■□□□ 1.65
TPM1-204ENST00000334895 MAP3K10Q02779 954 aa25.38■■□□□ 1.65
TPM1-204ENST00000334895 TATDN1Q6P1N9 297 aa25.38■■□□□ 1.65
TPM1-204ENST00000334895 RBM46Q8TBY0 533 aaKnown RBP25.38■■□□□ 1.65
TPM1-204ENST00000334895 ZNF287Q9HBT7 754 aa25.38■■□□□ 1.65
TPM1-204ENST00000334895 GPHNQ9NQX3 736 aaPredicted RBP25.38■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms