RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 SNCAIPQ9Y6H5 919 aa16.89■□□□□ 0.29
LIMS1-201ENST00000332345 OTOFQ9HC10 1997 aa16.88■□□□□ 0.29
LIMS1-201ENST00000332345 SPDYE5A6NIY4 337 aa16.88■□□□□ 0.29
LIMS1-201ENST00000332345 PPATQ06203 517 aa16.88■□□□□ 0.29
LIMS1-201ENST00000332345 SLFNL1Q499Z3 407 aa16.88■□□□□ 0.29
LIMS1-201ENST00000332345 LCORLQ8N3X6 602 aa16.88■□□□□ 0.29
LIMS1-201ENST00000332345 CRACR2BQ8N4Y2 399 aaPredicted RBP16.88■□□□□ 0.29
LIMS1-201ENST00000332345 OTUD5Q96G74 571 aa16.88■□□□□ 0.29
LIMS1-201ENST00000332345 ARMT1Q9H993 441 aa16.88■□□□□ 0.29
LIMS1-201ENST00000332345 RNF186Q9NXI6 227 aa16.88■□□□□ 0.29
LIMS1-201ENST00000332345 SAGE1Q9NXZ1 904 aa16.88■□□□□ 0.29
LIMS1-201ENST00000332345 MYH1P12882 1939 aa16.88■□□□□ 0.29
LIMS1-201ENST00000332345 TRPA1O75762 1119 aa16.87■□□□□ 0.29
LIMS1-201ENST00000332345 MBD4O95243 580 aa16.87■□□□□ 0.29
LIMS1-201ENST00000332345 ALDH1A1P00352 501 aa16.87■□□□□ 0.29
LIMS1-201ENST00000332345 GJA5P36382 358 aa16.87■□□□□ 0.29
LIMS1-201ENST00000332345 GTF2A2P52657 109 aa16.87■□□□□ 0.29
LIMS1-201ENST00000332345 OTUD7BQ6GQQ9 843 aa16.87■□□□□ 0.29
LIMS1-201ENST00000332345 METTL16Q86W50 562 aaKnown RBP16.87■□□□□ 0.29
LIMS1-201ENST00000332345 APPBP2Q92624 585 aa16.87■□□□□ 0.29
LIMS1-201ENST00000332345 EVI5LQ96CN4 794 aa16.87■□□□□ 0.29
LIMS1-201ENST00000332345 DDRGK1Q96HY6 314 aa16.87■□□□□ 0.29
LIMS1-201ENST00000332345 FSD1Q9BTV5 496 aa16.87■□□□□ 0.29
LIMS1-201ENST00000332345 ATP8A2Q9NTI2 1148 aa16.87■□□□□ 0.29
LIMS1-201ENST00000332345 POLR3DP05423 398 aaPredicted RBP16.86■□□□□ 0.29
LIMS1-201ENST00000332345 PPIL2Q13356 520 aa16.86■□□□□ 0.29
LIMS1-201ENST00000332345 TICAM2Q86XR7 235 aa16.86■□□□□ 0.29
LIMS1-201ENST00000332345 PLEKHM2Q8IWE5 1019 aa16.86■□□□□ 0.29
LIMS1-201ENST00000332345 SCYL3Q8IZE3 742 aa16.86■□□□□ 0.29
LIMS1-201ENST00000332345 PUS7LQ9H0K6 701 aaKnown RBP16.86■□□□□ 0.29
LIMS1-201ENST00000332345 OSBPL3Q9H4L5 887 aa16.86■□□□□ 0.29
LIMS1-201ENST00000332345 MCM9Q9NXL9 1143 aa16.86■□□□□ 0.29
LIMS1-201ENST00000332345 TESPA1A2RU30 521 aaPredicted RBP16.85■□□□□ 0.29
LIMS1-201ENST00000332345 CHGBP05060 677 aa16.85■□□□□ 0.29
LIMS1-201ENST00000332345 CENPBP07199 599 aaPredicted RBP16.85■□□□□ 0.29
LIMS1-201ENST00000332345 SLURP2P0DP57 97 aa16.85■□□□□ 0.29
LIMS1-201ENST00000332345 HSPA8P11142 646 aaKnown RBP16.85■□□□□ 0.29
LIMS1-201ENST00000332345 LBX1P52954 281 aa16.85■□□□□ 0.29
LIMS1-201ENST00000332345 SNAPC2Q13487 334 aa16.85■□□□□ 0.29
LIMS1-201ENST00000332345 IFNL1Q8IU54 200 aa16.85■□□□□ 0.29
LIMS1-201ENST00000332345 SDR42E1Q8WUS8 393 aa16.85■□□□□ 0.29
LIMS1-201ENST00000332345 DCP1AQ9NPI6 582 aaPredicted RBP16.85■□□□□ 0.29
LIMS1-201ENST00000332345 PRDM10Q9NQV6 1147 aa16.85■□□□□ 0.29
LIMS1-201ENST00000332345 SLC4A4Q9Y6R1 1079 aa16.85■□□□□ 0.29
LIMS1-201ENST00000332345 FAM196BA6NMK8 535 aa16.84■□□□□ 0.29
LIMS1-201ENST00000332345 TRIM6-TRIM34B2RNG4 842 aa16.84■□□□□ 0.29
LIMS1-201ENST00000332345 IRF6O14896 467 aa16.84■□□□□ 0.29
LIMS1-201ENST00000332345 CETPP11597 493 aa16.84■□□□□ 0.29
LIMS1-201ENST00000332345 PTPRAP18433 802 aa16.84■□□□□ 0.29
LIMS1-201ENST00000332345 CAP2P40123 477 aa16.84■□□□□ 0.29
LIMS1-201ENST00000332345 AMOTL1Q8IY63 956 aa16.84■□□□□ 0.29
LIMS1-201ENST00000332345 OSBP2Q969R2 916 aa16.84■□□□□ 0.29
LIMS1-201ENST00000332345 MS4A4AQ96JQ5 239 aa16.84■□□□□ 0.29
LIMS1-201ENST00000332345 STRBPQ96SI9 672 aaKnown RBP16.84■□□□□ 0.29
LIMS1-201ENST00000332345 EHD4Q9H223 541 aa16.84■□□□□ 0.29
LIMS1-201ENST00000332345 SERPINB13Q9UIV8 391 aa16.84■□□□□ 0.29
LIMS1-201ENST00000332345 ZHX2Q9Y6X8 837 aa16.84■□□□□ 0.29
LIMS1-201ENST00000332345 CCL15-CCL14A0A0B4J2E2 113 aa16.83■□□□□ 0.28
LIMS1-201ENST00000332345 CXCL11O14625 94 aa16.83■□□□□ 0.28
LIMS1-201ENST00000332345 PRKAB2O43741 272 aa16.83■□□□□ 0.28
LIMS1-201ENST00000332345 NEFLP07196 543 aa16.83■□□□□ 0.28
LIMS1-201ENST00000332345 GNAT2P19087 354 aa16.83■□□□□ 0.28
LIMS1-201ENST00000332345 CCL15Q16663 113 aa16.83■□□□□ 0.28
LIMS1-201ENST00000332345 SLC4A8Q2Y0W8 1093 aa16.83■□□□□ 0.28
LIMS1-201ENST00000332345 GINM1Q9NU53 330 aa16.83■□□□□ 0.28
LIMS1-201ENST00000332345 TSKSQ9UJT2 592 aa16.83■□□□□ 0.28
LIMS1-201ENST00000332345 TAOK2Q9UL54 1235 aa16.83■□□□□ 0.28
LIMS1-201ENST00000332345 PLCD1P51178 756 aa16.82■□□□□ 0.28
LIMS1-201ENST00000332345 RILPL2Q969X0 211 aa16.82■□□□□ 0.28
LIMS1-201ENST00000332345 TBC1D2Q9BYX2 928 aa16.82■□□□□ 0.28
LIMS1-201ENST00000332345 KCNH4Q9UQ05 1017 aa16.82■□□□□ 0.28
LIMS1-201ENST00000332345 IGF2BP3O00425 579 aaKnown RBP eCLIP16.81■□□□□ 0.28
LIMS1-201ENST00000332345 GPAA1O43292 621 aa16.81■□□□□ 0.28
LIMS1-201ENST00000332345 TBC1D8O95759 1140 aa16.81■□□□□ 0.28
LIMS1-201ENST00000332345 ASNSP08243 561 aa16.81■□□□□ 0.28
LIMS1-201ENST00000332345 ZMYM1Q5SVZ6 1142 aa16.81■□□□□ 0.28
LIMS1-201ENST00000332345 GIMAP6Q6P9H5 292 aa16.81■□□□□ 0.28
LIMS1-201ENST00000332345 BRI3BPQ8WY22 251 aa16.81■□□□□ 0.28
LIMS1-201ENST00000332345 PTPN18Q99952 460 aa16.81■□□□□ 0.28
LIMS1-201ENST00000332345 AFG3L2Q9Y4W6 797 aa16.81■□□□□ 0.28
LIMS1-201ENST00000332345 LAMB1P07942 1786 aa16.81■□□□□ 0.28
LIMS1-201ENST00000332345 USP17L5A8MUK1 530 aa16.8■□□□□ 0.28
LIMS1-201ENST00000332345 PATL2C9JE40 543 aaKnown RBP16.8■□□□□ 0.28
LIMS1-201ENST00000332345 USP17L12C9JPN9 530 aa16.8■□□□□ 0.28
LIMS1-201ENST00000332345 USP17L21D6R901 530 aa16.8■□□□□ 0.28
LIMS1-201ENST00000332345 APPP05067 770 aa16.8■□□□□ 0.28
LIMS1-201ENST00000332345 CERKLQ49MI3 558 aaPredicted RBP16.8■□□□□ 0.28
LIMS1-201ENST00000332345 TATDN1Q6P1N9 297 aa16.8■□□□□ 0.28
LIMS1-201ENST00000332345 CFHR5Q9BXR6 569 aa16.8■□□□□ 0.28
LIMS1-201ENST00000332345 DNAJC18Q9H819 358 aa16.8■□□□□ 0.28
LIMS1-201ENST00000332345 AS3MTQ9HBK9 375 aa16.8■□□□□ 0.28
LIMS1-201ENST00000332345 DOCK1Q14185 1865 aa16.8■□□□□ 0.28
LIMS1-201ENST00000332345 BAZ2AQ9UIF9 1905 aaKnown RBP16.79■□□□□ 0.28
LIMS1-201ENST00000332345 GSG1L2A8MUP6 293 aa16.79■□□□□ 0.28
LIMS1-201ENST00000332345 M0R2C6 588 aa16.79■□□□□ 0.28
LIMS1-201ENST00000332345 RRP1BQ14684 758 aaKnown RBP16.79■□□□□ 0.28
LIMS1-201ENST00000332345 C12orf60Q5U649 245 aa16.79■□□□□ 0.28
LIMS1-201ENST00000332345 FASTKD5Q7L8L6 764 aaKnown RBP16.79■□□□□ 0.28
LIMS1-201ENST00000332345 NACAP1Q9BZK3 213 aa16.79■□□□□ 0.28
LIMS1-201ENST00000332345 ZCCHC17Q9NP64 241 aaKnown RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms