RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 M0R2C6 588 aa16.66■□□□□ 0.26
TCOF1-201ENST00000323668 PPP6R2O75170 966 aa16.66■□□□□ 0.26
TCOF1-201ENST00000323668 NCBP1Q09161 790 aaKnown RBP16.66■□□□□ 0.26
TCOF1-201ENST00000323668 TTC38Q5R3I4 469 aa16.66■□□□□ 0.26
TCOF1-201ENST00000323668 CYP26C1Q6V0L0 522 aa16.66■□□□□ 0.26
TCOF1-201ENST00000323668 CAPZA3Q96KX2 299 aa16.66■□□□□ 0.26
TCOF1-201ENST00000323668 RSPH14Q9UHP6 348 aa16.66■□□□□ 0.26
TCOF1-201ENST00000323668 OVOS2A0A0J9YW53 1432 aa16.66■□□□□ 0.26
TCOF1-201ENST00000323668 OVOS2Q6IE36 1432 aa16.66■□□□□ 0.26
TCOF1-201ENST00000323668 PCCAP05165 728 aaPredicted RBP16.66■□□□□ 0.26
TCOF1-201ENST00000323668 APOA5Q6Q788 366 aa16.66■□□□□ 0.26
TCOF1-201ENST00000323668 DDX17Q92841 729 aaKnown RBP16.66■□□□□ 0.26
TCOF1-201ENST00000323668 MYOM1P52179 1685 aa16.65■□□□□ 0.26
TCOF1-201ENST00000323668 TRIML1Q8N9V2 468 aa16.65■□□□□ 0.26
TCOF1-201ENST00000323668 LRRC27Q9C0I9 530 aa16.65■□□□□ 0.26
TCOF1-201ENST00000323668 BICDL2A1A5D9 508 aa16.65■□□□□ 0.26
TCOF1-201ENST00000323668 PRDM1O75626 825 aa16.65■□□□□ 0.26
TCOF1-201ENST00000323668 HLTFQ14527 1009 aaKnown RBP eCLIP16.65■□□□□ 0.26
TCOF1-201ENST00000323668 ZNF827Q17R98 1081 aa16.65■□□□□ 0.26
TCOF1-201ENST00000323668 IFNL3Q8IZI9 196 aa16.65■□□□□ 0.26
TCOF1-201ENST00000323668 ZBTB38Q8NAP3 1195 aaPredicted RBP16.65■□□□□ 0.26
TCOF1-201ENST00000323668 MMRN2Q9H8L6 949 aa16.65■□□□□ 0.26
TCOF1-201ENST00000323668 SEPT11Q9NVA2 429 aaKnown RBP16.65■□□□□ 0.26
TCOF1-201ENST00000323668 MAPK8IP1Q9UQF2 711 aa16.65■□□□□ 0.26
TCOF1-201ENST00000323668 ANKARQ7Z5J8 1434 aa16.65■□□□□ 0.26
TCOF1-201ENST00000323668 UBE3CQ15386 1083 aa16.65■□□□□ 0.26
TCOF1-201ENST00000323668 TICAM2Q86XR7 235 aa16.65■□□□□ 0.26
TCOF1-201ENST00000323668 ATG3Q9NT62 314 aa16.65■□□□□ 0.26
TCOF1-201ENST00000323668 MCM9Q9NXL9 1143 aa16.65■□□□□ 0.26
TCOF1-201ENST00000323668 PIK3C2BO00750 1634 aa16.65■□□□□ 0.26
TCOF1-201ENST00000323668 STX10O60499 249 aa16.65■□□□□ 0.26
TCOF1-201ENST00000323668 DESI2Q9BSY9 194 aa16.65■□□□□ 0.26
TCOF1-201ENST00000323668 DEPDC5O75140 1603 aa16.64■□□□□ 0.26
TCOF1-201ENST00000323668 USP32Q8NFA0 1604 aa16.64■□□□□ 0.25
TCOF1-201ENST00000323668 CDC42BPGQ6DT37 1551 aa16.64■□□□□ 0.25
TCOF1-201ENST00000323668 PPP1R12BO60237 982 aaPredicted RBP16.64■□□□□ 0.25
TCOF1-201ENST00000323668 PAK1Q13153 545 aa16.64■□□□□ 0.25
TCOF1-201ENST00000323668 PIK3AP1Q6ZUJ8 805 aa16.64■□□□□ 0.25
TCOF1-201ENST00000323668 ZNF654Q8IZM8 581 aa16.64■□□□□ 0.25
TCOF1-201ENST00000323668 CD163L1Q9NR16 1453 aa16.64■□□□□ 0.25
TCOF1-201ENST00000323668 SALL3Q9BXA9 1300 aa16.64■□□□□ 0.25
TCOF1-201ENST00000323668 CCDC144BQ3MJ40 725 aa16.64■□□□□ 0.25
TCOF1-201ENST00000323668 FCHSD1Q86WN1 690 aa16.64■□□□□ 0.25
TCOF1-201ENST00000323668 STAMQ92783 540 aa16.64■□□□□ 0.25
TCOF1-201ENST00000323668 GPHNQ9NQX3 736 aaPredicted RBP16.64■□□□□ 0.25
TCOF1-201ENST00000323668 MROH5Q6ZUA9 1318 aa16.64■□□□□ 0.25
TCOF1-201ENST00000323668 ZNF76P36508 570 aa16.64■□□□□ 0.25
TCOF1-201ENST00000323668 VPS54Q9P1Q0 977 aa16.64■□□□□ 0.25
TCOF1-201ENST00000323668 NAPAP54920 295 aa16.63■□□□□ 0.25
TCOF1-201ENST00000323668 PLIN2Q99541 437 aa16.63■□□□□ 0.25
TCOF1-201ENST00000323668 OAS2P29728 719 aaKnown RBP16.63■□□□□ 0.25
TCOF1-201ENST00000323668 TBC1D8BQ0IIM8 1120 aa16.63■□□□□ 0.25
TCOF1-201ENST00000323668 SMC1AQ14683 1233 aaKnown RBP16.63■□□□□ 0.25
TCOF1-201ENST00000323668 ZFYVE27Q5T4F4 411 aa16.63■□□□□ 0.25
TCOF1-201ENST00000323668 KCNF1Q9H3M0 494 aa16.63■□□□□ 0.25
TCOF1-201ENST00000323668 MPHOSPH10O00566 681 aaKnown RBP16.63■□□□□ 0.25
TCOF1-201ENST00000323668 ZSCAN29Q8IWY8 852 aaPredicted RBP16.63■□□□□ 0.25
TCOF1-201ENST00000323668 FANCBQ8NB91 859 aa16.63■□□□□ 0.25
TCOF1-201ENST00000323668 NLRP3Q96P20 1036 aa16.63■□□□□ 0.25
TCOF1-201ENST00000323668 NRKQ7Z2Y5 1582 aa16.63■□□□□ 0.25
TCOF1-201ENST00000323668 ADAMTS2O95450 1211 aa16.63■□□□□ 0.25
TCOF1-201ENST00000323668 CTSWP56202 376 aa16.63■□□□□ 0.25
TCOF1-201ENST00000323668 SLF2Q8IX21 1173 aa16.63■□□□□ 0.25
TCOF1-201ENST00000323668 SMARCC2Q8TAQ2 1214 aa16.63■□□□□ 0.25
TCOF1-201ENST00000323668 WWC3Q9ULE0 1092 aa16.63■□□□□ 0.25
TCOF1-201ENST00000323668 NCAPD2Q15021 1401 aa16.63■□□□□ 0.25
TCOF1-201ENST00000323668 NBPF11Q86T75 865 aa16.62■□□□□ 0.25
TCOF1-201ENST00000323668 hCG_1642624A0A1W2PR95 340 aa16.62■□□□□ 0.25
TCOF1-201ENST00000323668 H7C1W4 665 aa16.62■□□□□ 0.25
TCOF1-201ENST00000323668 HSF2BPO75031 334 aa16.62■□□□□ 0.25
TCOF1-201ENST00000323668 TAB2Q9NYJ8 693 aa16.62■□□□□ 0.25
TCOF1-201ENST00000323668 NOP2P46087 812 aaKnown RBP16.62■□□□□ 0.25
TCOF1-201ENST00000323668 SLFNL1Q499Z3 407 aa16.62■□□□□ 0.25
TCOF1-201ENST00000323668 CMTR1Q8N1G2 835 aaKnown RBP16.62■□□□□ 0.25
TCOF1-201ENST00000323668 UBA5Q9GZZ9 404 aa16.62■□□□□ 0.25
TCOF1-201ENST00000323668 MROH2AA6NES4 1674 aa16.62■□□□□ 0.25
TCOF1-201ENST00000323668 ADGRL3Q9HAR2 1447 aa16.62■□□□□ 0.25
TCOF1-201ENST00000323668 CCDC51Q96ER9 411 aa16.62■□□□□ 0.25
TCOF1-201ENST00000323668 PUS7LQ9H0K6 701 aaKnown RBP16.62■□□□□ 0.25
TCOF1-201ENST00000323668 GOLPH3LQ9H4A5 285 aa16.62■□□□□ 0.25
TCOF1-201ENST00000323668 C6orf50Q9HD87 102 aa16.62■□□□□ 0.25
TCOF1-201ENST00000323668 DIP2CQ9Y2E4 1556 aa16.61■□□□□ 0.25
TCOF1-201ENST00000323668 PLCD1P51178 756 aa16.61■□□□□ 0.25
TCOF1-201ENST00000323668 GSTO1P78417 241 aa16.61■□□□□ 0.25
TCOF1-201ENST00000323668 BRD3Q15059 726 aa16.61■□□□□ 0.25
TCOF1-201ENST00000323668 PARP10Q53GL7 1025 aa16.61■□□□□ 0.25
TCOF1-201ENST00000323668 NBPF5PQ86XG9 351 aaPredicted RBP16.61■□□□□ 0.25
TCOF1-201ENST00000323668 FMR1NBQ8N0W7 255 aaPredicted RBP16.61■□□□□ 0.25
TCOF1-201ENST00000323668 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.61■□□□□ 0.25
TCOF1-201ENST00000323668 DENND2AQ9ULE3 1009 aa16.61■□□□□ 0.25
TCOF1-201ENST00000323668 MED23Q9ULK4 1368 aa16.61■□□□□ 0.25
TCOF1-201ENST00000323668 PDE8BO95263 885 aa16.61■□□□□ 0.25
TCOF1-201ENST00000323668 SLF1Q9BQI6 1058 aa16.61■□□□□ 0.25
TCOF1-201ENST00000323668 TMCO5BA8MYB1 307 aa16.61■□□□□ 0.25
TCOF1-201ENST00000323668 OPA1O60313 960 aa16.6■□□□□ 0.25
TCOF1-201ENST00000323668 ATP1A3P13637 1013 aa16.6■□□□□ 0.25
TCOF1-201ENST00000323668 TCERG1LQ5VWI1 586 aa16.6■□□□□ 0.25
TCOF1-201ENST00000323668 PI16Q6UXB8 463 aa16.6■□□□□ 0.25
TCOF1-201ENST00000323668 MICALCLQ6ZW33 695 aa16.6■□□□□ 0.25
TCOF1-201ENST00000323668 SPATA1Q5VX52 437 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms