RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 MCAMP43121 646 aa12.48□□□□□ -0.41
LSM3-201ENST00000306024 RASGRF1Q13972 1273 aa12.48□□□□□ -0.41
LSM3-201ENST00000306024 IMMTQ16891 758 aaKnown RBP12.48□□□□□ -0.41
LSM3-201ENST00000306024 GEMIN8Q9NWZ8 242 aaKnown RBP12.48□□□□□ -0.41
LSM3-201ENST00000306024 HMG20BQ9P0W2 317 aa12.48□□□□□ -0.41
LSM3-201ENST00000306024 PHACTR2O75167 634 aa12.48□□□□□ -0.41
LSM3-201ENST00000306024 SCARF1Q14162 830 aa12.48□□□□□ -0.41
LSM3-201ENST00000306024 TMC4Q7Z404 712 aa12.48□□□□□ -0.41
LSM3-201ENST00000306024 TDRD7Q8NHU6 1098 aaKnown RBP12.48□□□□□ -0.41
LSM3-201ENST00000306024 PPM1EQ8WY54 764 aa12.48□□□□□ -0.41
LSM3-201ENST00000306024 MINDY4BA8MYZ0 360 aa12.48□□□□□ -0.41
LSM3-201ENST00000306024 TM4SF1P30408 202 aa12.48□□□□□ -0.41
LSM3-201ENST00000306024 DHX37Q8IY37 1157 aaKnown RBP12.48□□□□□ -0.41
LSM3-201ENST00000306024 CCDC150Q8NCX0 1101 aa12.48□□□□□ -0.41
LSM3-201ENST00000306024 APPBP2Q92624 585 aa12.48□□□□□ -0.41
LSM3-201ENST00000306024 NCAPGQ9BPX3 1015 aa12.48□□□□□ -0.41
LSM3-201ENST00000306024 SRRTQ9BXP5 876 aaKnown RBP12.48□□□□□ -0.41
LSM3-201ENST00000306024 BRMS1Q9HCU9 246 aa12.48□□□□□ -0.41
LSM3-201ENST00000306024 LDHBP07195 334 aaKnown RBP12.47□□□□□ -0.41
LSM3-201ENST00000306024 RDXP35241 583 aaKnown RBP12.47□□□□□ -0.41
LSM3-201ENST00000306024 ME1P48163 572 aa12.47□□□□□ -0.41
LSM3-201ENST00000306024 GNG11P61952 73 aa12.47□□□□□ -0.41
LSM3-201ENST00000306024 JAKMIP3Q5VZ66 844 aa12.47□□□□□ -0.41
LSM3-201ENST00000306024 CLSTN2Q9H4D0 955 aa12.47□□□□□ -0.41
LSM3-201ENST00000306024 MTMR6Q9Y217 621 aa12.47□□□□□ -0.41
LSM3-201ENST00000306024 MYH14Q7Z406 1995 aaKnown RBP12.47□□□□□ -0.41
LSM3-201ENST00000306024 SERPINC1P01008 464 aa12.47□□□□□ -0.41
LSM3-201ENST00000306024 LDHCP07864 332 aa12.47□□□□□ -0.41
LSM3-201ENST00000306024 ANKRD20A12PQ8NF67 263 aa12.47□□□□□ -0.41
LSM3-201ENST00000306024 SLC16A10Q8TF71 515 aa12.47□□□□□ -0.41
LSM3-201ENST00000306024 YY1AP1Q9H869 796 aa12.47□□□□□ -0.41
LSM3-201ENST00000306024 ELP1O95163 1332 aa12.47□□□□□ -0.41
LSM3-201ENST00000306024 ZNF532Q9HCE3 1301 aa12.47□□□□□ -0.41
LSM3-201ENST00000306024 ANKRD65E5RJM6 399 aa12.47□□□□□ -0.41
LSM3-201ENST00000306024 MYCNP04198 464 aaPredicted RBP12.47□□□□□ -0.41
LSM3-201ENST00000306024 DOK7Q18PE1 504 aa12.47□□□□□ -0.41
LSM3-201ENST00000306024 HELLSQ9NRZ9 838 aa12.47□□□□□ -0.41
LSM3-201ENST00000306024 THSD7AQ9UPZ6 1657 aa12.47□□□□□ -0.41
LSM3-201ENST00000306024 MBD4O95243 580 aa12.46□□□□□ -0.41
LSM3-201ENST00000306024 USP5P45974 858 aa12.46□□□□□ -0.41
LSM3-201ENST00000306024 KRT32Q14532 448 aa12.46□□□□□ -0.41
LSM3-201ENST00000306024 FBXO18Q8NFZ0 1043 aa12.46□□□□□ -0.41
LSM3-201ENST00000306024 WDR66Q8TBY9 1149 aa12.46□□□□□ -0.41
LSM3-201ENST00000306024 CRAMP1Q96RY5 1269 aa12.46□□□□□ -0.41
LSM3-201ENST00000306024 CFAP45Q9UL16 551 aa12.46□□□□□ -0.41
LSM3-201ENST00000306024 ARFGEF2Q9Y6D5 1785 aa12.46□□□□□ -0.41
LSM3-201ENST00000306024 ACTN2P35609 894 aa12.46□□□□□ -0.41
LSM3-201ENST00000306024 GIMAP7Q8NHV1 300 aa12.46□□□□□ -0.41
LSM3-201ENST00000306024 BCS1LQ9Y276 419 aa12.46□□□□□ -0.41
LSM3-201ENST00000306024 ZNF213O14771 459 aa12.46□□□□□ -0.42
LSM3-201ENST00000306024 GPAA1O43292 621 aa12.46□□□□□ -0.42
LSM3-201ENST00000306024 PDE6AP16499 860 aa12.46□□□□□ -0.42
LSM3-201ENST00000306024 IBSPP21815 317 aaPredicted RBP12.46□□□□□ -0.42
LSM3-201ENST00000306024 GTF2IP78347 998 aa12.46□□□□□ -0.42
LSM3-201ENST00000306024 DHX8Q14562 1220 aaKnown RBP12.46□□□□□ -0.42
LSM3-201ENST00000306024 DDX11Q96FC9 970 aa12.46□□□□□ -0.42
LSM3-201ENST00000306024 SLC4A4Q9Y6R1 1079 aa12.46□□□□□ -0.42
LSM3-201ENST00000306024 SALL3Q9BXA9 1300 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 PLA2G4AP47712 749 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 GPSM2P81274 684 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 MUM1L1Q5H9M0 696 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 SRLQ86TD4 932 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 PLA2G4DQ86XP0 818 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 TTLL6Q8N841 843 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 CTAGE5O15320 804 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 ZSCAN12O43309 604 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 C21orf2O43822 256 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 SNX14Q9Y5W7 946 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 UBR2Q8IWV8 1755 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 MAGEB6P1A0A0J9YX57 407 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 PPIP5K2O43314 1243 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 NR1I2O75469 434 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 BAG3O95817 575 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 PTH1RQ03431 593 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 NFXL1Q6ZNB6 911 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 SLF2Q8IX21 1173 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 FAM84BQ96KN1 310 aaPredicted RBP12.45□□□□□ -0.42
LSM3-201ENST00000306024 TCEANC2Q96MN5 208 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 FUCA2Q9BTY2 467 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 PIH1D3Q9NQM4 214 aaKnown RBP12.45□□□□□ -0.42
LSM3-201ENST00000306024 FHOD1Q9Y613 1164 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 ZNF609O15014 1411 aa12.45□□□□□ -0.42
LSM3-201ENST00000306024 A0A0G2JLW4 131 aa12.44□□□□□ -0.42
LSM3-201ENST00000306024 MAP2K2P36507 400 aa12.44□□□□□ -0.42
LSM3-201ENST00000306024 CFAP100Q494V2 611 aa12.44□□□□□ -0.42
LSM3-201ENST00000306024 CT47A1Q5JQC4 288 aaPredicted RBP12.44□□□□□ -0.42
LSM3-201ENST00000306024 LARGE2Q8N3Y3 721 aa12.44□□□□□ -0.42
LSM3-201ENST00000306024 MRFAP1L1Q96HT8 127 aa12.44□□□□□ -0.42
LSM3-201ENST00000306024 ARMT1Q9H993 441 aa12.44□□□□□ -0.42
LSM3-201ENST00000306024 SLC4A8Q2Y0W8 1093 aa12.44□□□□□ -0.42
LSM3-201ENST00000306024 MFSD14BQ5SR56 506 aa12.44□□□□□ -0.42
LSM3-201ENST00000306024 CREB3L3Q68CJ9 461 aa12.44□□□□□ -0.42
LSM3-201ENST00000306024 RUFY3Q7L099 469 aa12.44□□□□□ -0.42
LSM3-201ENST00000306024 CDC37L1Q7L3B6 337 aa12.44□□□□□ -0.42
LSM3-201ENST00000306024 CCAR1Q8IX12 1150 aaKnown RBP12.44□□□□□ -0.42
LSM3-201ENST00000306024 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.44□□□□□ -0.42
LSM3-201ENST00000306024 ZNF446Q9NWS9 450 aa12.44□□□□□ -0.42
LSM3-201ENST00000306024 IFNKQ9P0W0 207 aa12.44□□□□□ -0.42
LSM3-201ENST00000306024 BIN1O00499 593 aa12.44□□□□□ -0.42
LSM3-201ENST00000306024 TUBB4AP04350 444 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms