RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 DDX19AQ9NUU7 478 aaKnown RBP8.76□□□□□ -1.01
SCN9A-201ENST00000303354 TXNDC16Q9P2K2 825 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 ZNF335Q9H4Z2 1342 aaPredicted RBP8.76□□□□□ -1.01
SCN9A-201ENST00000303354 PNMA6EA0A0J9YXQ4 647 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 USP37Q86T82 979 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 SNX29Q8TEQ0 813 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 GBP3Q9H0R5 595 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 CTAGE5O15320 804 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 CRCPO75575 148 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 LTKP29376 864 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 POLA2Q14181 598 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 GPKOWQ92917 476 aaPredicted RBP eCLIP8.76□□□□□ -1.01
SCN9A-201ENST00000303354 KIF9Q9HAQ2 790 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 SPC25Q9HBM1 224 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 BNIP3LO60238 219 aa8.75□□□□□ -1.01
SCN9A-201ENST00000303354 RHOXF2BP0C7M4 288 aa8.75□□□□□ -1.01
SCN9A-201ENST00000303354 RHOXF2Q9BQY4 288 aa8.75□□□□□ -1.01
SCN9A-201ENST00000303354 SEPT10Q9P0V9 454 aa8.75□□□□□ -1.01
SCN9A-201ENST00000303354 USP17L12C9JPN9 530 aa8.75□□□□□ -1.01
SCN9A-201ENST00000303354 USP17L21D6R901 530 aa8.75□□□□□ -1.01
SCN9A-201ENST00000303354 TNNI1P19237 187 aa8.75□□□□□ -1.01
SCN9A-201ENST00000303354 TNFAIP3P21580 790 aa8.75□□□□□ -1.01
SCN9A-201ENST00000303354 GOLGA1Q92805 767 aa8.75□□□□□ -1.01
SCN9A-201ENST00000303354 TEKT1Q969V4 418 aa8.75□□□□□ -1.01
SCN9A-201ENST00000303354 SPATA17Q96L03 361 aa8.75□□□□□ -1.01
SCN9A-201ENST00000303354 TECP42680 631 aa8.75□□□□□ -1.01
SCN9A-201ENST00000303354 OSTNP61366 133 aa8.75□□□□□ -1.01
SCN9A-201ENST00000303354 DYNLL1P63167 89 aaKnown RBP8.75□□□□□ -1.01
SCN9A-201ENST00000303354 MRPS27Q92552 414 aaKnown RBP8.75□□□□□ -1.01
SCN9A-201ENST00000303354 NOC4LQ9BVI4 516 aaKnown RBP8.75□□□□□ -1.01
SCN9A-201ENST00000303354 CACNB3P54284 484 aa8.75□□□□□ -1.01
SCN9A-201ENST00000303354 CERKLQ49MI3 558 aaPredicted RBP8.75□□□□□ -1.01
SCN9A-201ENST00000303354 PRR16Q569H4 304 aa8.75□□□□□ -1.01
SCN9A-201ENST00000303354 CFAP58Q5T655 872 aa8.75□□□□□ -1.01
SCN9A-201ENST00000303354 FNDC3AQ9Y2H6 1198 aaKnown RBP8.75□□□□□ -1.01
SCN9A-201ENST00000303354 EPB41P11171 864 aaKnown RBP8.75□□□□□ -1.01
SCN9A-201ENST00000303354 GTF2F1P35269 517 aaKnown RBP eCLIP8.75□□□□□ -1.01
SCN9A-201ENST00000303354 SNX16P57768 344 aa8.75□□□□□ -1.01
SCN9A-201ENST00000303354 ZNF668Q96K58 619 aaPredicted RBP8.75□□□□□ -1.01
SCN9A-201ENST00000303354 MRPL44Q9H9J2 332 aaKnown RBP8.75□□□□□ -1.01
SCN9A-201ENST00000303354 CYP2J2P51589 502 aa8.75□□□□□ -1.01
SCN9A-201ENST00000303354 HINFPQ9BQA5 517 aa8.75□□□□□ -1.01
SCN9A-201ENST00000303354 RPS8P62241 208 aaKnown RBP8.75□□□□□ -1.01
SCN9A-201ENST00000303354 ZNF569Q5MCW4 686 aa8.75□□□□□ -1.01
SCN9A-201ENST00000303354 NAA15Q9BXJ9 866 aaKnown RBP8.75□□□□□ -1.01
SCN9A-201ENST00000303354 PUS3Q9BZE2 481 aaKnown RBP8.75□□□□□ -1.01
SCN9A-201ENST00000303354 POLR2DO15514 142 aaKnown RBP8.75□□□□□ -1.01
SCN9A-201ENST00000303354 YARSP54577 528 aaKnown RBP8.75□□□□□ -1.01
SCN9A-201ENST00000303354 CCDC186Q7Z3E2 898 aa8.75□□□□□ -1.01
SCN9A-201ENST00000303354 ANKFY1Q9P2R3 1169 aa8.75□□□□□ -1.01
SCN9A-201ENST00000303354 TRPC5Q9UL62 973 aaPredicted RBP8.75□□□□□ -1.01
SCN9A-201ENST00000303354 HSF2BPO75031 334 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 SERPINB2P05120 415 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 MAN1A1P33908 653 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 DNM2P50570 870 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 IFNKQ9P0W0 207 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 TOP2BQ02880 1626 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 SLC27A2O14975 620 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 STX10O60499 249 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 FMNL1O95466 1100 aaPredicted RBP8.74□□□□□ -1.01
SCN9A-201ENST00000303354 PARP10Q53GL7 1025 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 PARP2Q9UGN5 583 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 PCDHB13Q9Y5F0 798 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 WDR66Q8TBY9 1149 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 ZNF653Q96CK0 615 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 GREM2Q9H772 168 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 CRKLP46109 303 aaKnown RBP8.74□□□□□ -1.01
SCN9A-201ENST00000303354 SMTNP53814 917 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 CHRNDQ07001 517 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 EEF2KMTQ96G04 330 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 BZW2Q9Y6E2 419 aaKnown RBP8.74□□□□□ -1.01
SCN9A-201ENST00000303354 MYBP10242 640 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 PPP4R4Q6NUP7 873 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 CASC4Q6P4E1 433 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 AKT3Q9Y243 479 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 ZSCAN16Q9H4T2 348 aaPredicted RBP8.74□□□□□ -1.01
SCN9A-201ENST00000303354 SEC24BO95487 1268 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 F13A1P00488 732 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 SYT1P21579 422 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 ADCY7P51828 1080 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 CTSWP56202 376 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 CACNB1Q02641 598 aaPredicted RBP8.74□□□□□ -1.01
SCN9A-201ENST00000303354 CAPN12Q6ZSI9 719 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 NLRX1Q86UT6 975 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 SEPT12Q8IYM1 358 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 AS3MTQ9HBK9 375 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 CCDC175P0C221 793 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 CCDC172P0C7W6 258 aa8.74□□□□□ -1.01
SCN9A-201ENST00000303354 DHX32Q7L7V1 743 aaKnown RBP8.74□□□□□ -1.01
SCN9A-201ENST00000303354 RBM28Q9NW13 759 aaKnown RBP8.74□□□□□ -1.01
SCN9A-201ENST00000303354 ZHX1Q9UKY1 873 aaPredicted RBP8.74□□□□□ -1.01
SCN9A-201ENST00000303354 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.74□□□□□ -1.014e-6■■■□□ 17.6
SCN9A-201ENST00000303354 CYLC1P35663 651 aaPredicted RBP8.73□□□□□ -1.01
SCN9A-201ENST00000303354 UBE2HP62256 183 aa8.73□□□□□ -1.01
SCN9A-201ENST00000303354 TRAF1Q13077 416 aa8.73□□□□□ -1.01
SCN9A-201ENST00000303354 MIER3Q7Z3K6 550 aa8.73□□□□□ -1.01
SCN9A-201ENST00000303354 RYBPQ8N488 228 aaPredicted RBP8.73□□□□□ -1.01
SCN9A-201ENST00000303354 SAT1P21673 171 aa8.73□□□□□ -1.01
SCN9A-201ENST00000303354 SELENOOQ9BVL4 669 aa8.73□□□□□ -1.01
SCN9A-201ENST00000303354 GCKRQ14397 625 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms