RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 GABPB1Q06547 395 aaPredicted RBP11.04□□□□□ -0.64
COL6A3-201ENST00000295550 PAXIP1Q6ZW49 1069 aaPredicted RBP11.04□□□□□ -0.64
COL6A3-201ENST00000295550 CADPS2Q86UW7 1296 aa11.04□□□□□ -0.64
COL6A3-201ENST00000295550 UAP1Q16222 522 aaPredicted RBP11.03□□□□□ -0.64
COL6A3-201ENST00000295550 ARHGAP31Q2M1Z3 1444 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 CDC37L1Q7L3B6 337 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 HMGB2P26583 209 aaKnown RBP11.03□□□□□ -0.64
COL6A3-201ENST00000295550 CALM1P0DP23 149 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 CALM2P0DP24 149 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 CALM3P0DP25 149 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 PRR16Q569H4 304 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 SEL1L2Q5TEA6 688 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 GSTO1P78417 241 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 ERO1AQ96HE7 468 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 PLEKHG3A1L390 1219 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 TRIM75PA6NK02 468 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 CETN3O15182 167 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 IFIT1BQ5T764 474 aaKnown RBP11.03□□□□□ -0.64
COL6A3-201ENST00000295550 SYT10Q6XYQ8 523 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 CNGA4Q8IV77 575 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 BICDL2A1A5D9 508 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 I3L4J1 428 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 EVCP57679 992 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 BICDL1Q6ZP65 573 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 CLUL1Q15846 466 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 TMEM87AQ8NBN3 555 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 NFATC2IPQ8NCF5 419 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 GSDMBQ8TAX9 411 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 TBX22Q9Y458 520 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 MAP7Q14244 749 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 VPS52Q8N1B4 723 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 ZCRB1Q8TBF4 217 aaKnown RBP11.03□□□□□ -0.64
COL6A3-201ENST00000295550 TPX2Q9ULW0 747 aaKnown RBP11.03□□□□□ -0.64
COL6A3-201ENST00000295550 SLC4A4Q9Y6R1 1079 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 KRT2P35908 639 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 ARHGAP24Q8N264 748 aa11.03□□□□□ -0.64
COL6A3-201ENST00000295550 MYCBPQ99417 103 aaPredicted RBP11.03□□□□□ -0.64
COL6A3-201ENST00000295550 MYL5Q02045 173 aa11.02□□□□□ -0.64
COL6A3-201ENST00000295550 FMNL3Q8IVF7 1028 aa11.02□□□□□ -0.64
COL6A3-201ENST00000295550 YEATS2Q9ULM3 1422 aa11.02□□□□□ -0.64
COL6A3-201ENST00000295550 MAK16Q9BXY0 300 aaKnown RBP11.02□□□□□ -0.64
COL6A3-201ENST00000295550 CBX8Q9HC52 389 aa11.02□□□□□ -0.64
COL6A3-201ENST00000295550 UTP11Q9Y3A2 253 aaKnown RBP11.02□□□□□ -0.64
COL6A3-201ENST00000295550 USP6P35125 1406 aa11.02□□□□□ -0.65
COL6A3-201ENST00000295550 GCKP35557 465 aa11.02□□□□□ -0.65
COL6A3-201ENST00000295550 CALCOCO2Q13137 446 aa11.02□□□□□ -0.65
COL6A3-201ENST00000295550 PLBD2Q8NHP8 589 aa11.02□□□□□ -0.65
COL6A3-201ENST00000295550 STAP2Q9UGK3 403 aa11.02□□□□□ -0.65
COL6A3-201ENST00000295550 TULP4Q9NRJ4 1543 aa11.02□□□□□ -0.65
COL6A3-201ENST00000295550 TBC1D31Q96DN5 1066 aa11.02□□□□□ -0.65
COL6A3-201ENST00000295550 UTP14AQ9BVJ6 771 aaKnown RBP11.02□□□□□ -0.65
COL6A3-201ENST00000295550 GOLGA6BA6NDN3 693 aa11.02□□□□□ -0.65
COL6A3-201ENST00000295550 A6NNZ2 444 aa11.02□□□□□ -0.65
COL6A3-201ENST00000295550 TUBB8Q3ZCM7 444 aa11.02□□□□□ -0.65
COL6A3-201ENST00000295550 CCDC122Q5T0U0 273 aa11.02□□□□□ -0.65
COL6A3-201ENST00000295550 FAM227BQ96M60 508 aa11.02□□□□□ -0.65
COL6A3-201ENST00000295550 GIGYF1O75420 1035 aaPredicted RBP11.02□□□□□ -0.65
COL6A3-201ENST00000295550 BAG3O95817 575 aa11.02□□□□□ -0.65
COL6A3-201ENST00000295550 INF2Q27J81 1249 aa11.02□□□□□ -0.65
COL6A3-201ENST00000295550 TRMT1LQ7Z2T5 733 aaKnown RBP11.02□□□□□ -0.65
COL6A3-201ENST00000295550 CCT6BQ92526 530 aa11.02□□□□□ -0.65
COL6A3-201ENST00000295550 CCDC26Q8TAB7 109 aa11.01□□□□□ -0.65
COL6A3-201ENST00000295550 TRIM4Q9C037 500 aa11.01□□□□□ -0.65
COL6A3-201ENST00000295550 MROH2AA6NES4 1674 aa11.01□□□□□ -0.65
COL6A3-201ENST00000295550 PLEKHG1Q9ULL1 1385 aa11.01□□□□□ -0.65
COL6A3-201ENST00000295550 NBPF7P0C2Y1 421 aaPredicted RBP11.01□□□□□ -0.65
COL6A3-201ENST00000295550 GEN1Q17RS7 908 aa11.01□□□□□ -0.65
COL6A3-201ENST00000295550 ZNF790Q6PG37 636 aa11.01□□□□□ -0.65
COL6A3-201ENST00000295550 NEURL4Q96JN8 1562 aa11.01□□□□□ -0.65
COL6A3-201ENST00000295550 RNF10Q8N5U6 811 aaKnown RBP11.01□□□□□ -0.65
COL6A3-201ENST00000295550 USH1CQ9Y6N9 552 aa11.01□□□□□ -0.65
COL6A3-201ENST00000295550 DLC1Q96QB1 1528 aa11.01□□□□□ -0.65
COL6A3-201ENST00000295550 ELF2Q15723 593 aa11.01□□□□□ -0.65
COL6A3-201ENST00000295550 UTP14CQ5TAP6 766 aaKnown RBP11.01□□□□□ -0.65
COL6A3-201ENST00000295550 PNMA8AQ86V59 439 aaPredicted RBP11.01□□□□□ -0.65
COL6A3-201ENST00000295550 ANO1Q5XXA6 986 aa11.01□□□□□ -0.65
COL6A3-201ENST00000295550 IMPG2Q9BZV3 1241 aa11.01□□□□□ -0.65
COL6A3-201ENST00000295550 VCX3AQ9NNX9 186 aa11.01□□□□□ -0.65
COL6A3-201ENST00000295550 NUTM2AQ8IVF1 878 aaPredicted RBP11.01□□□□□ -0.65
COL6A3-201ENST00000295550 TSPY2A6NKD2 308 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 TRPC3Q13507 836 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 TRIM68Q6AZZ1 485 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 NAPGQ99747 312 aaPredicted RBP11□□□□□ -0.65
COL6A3-201ENST00000295550 MTUS1Q9ULD2 1270 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 U2AF2P26368 475 aaKnown RBP eCLIP11□□□□□ -0.65
COL6A3-201ENST00000295550 WHAMMQ8TF30 809 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 CALML3P27482 149 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 PKP1Q13835 747 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 SDCCAG8Q86SQ7 713 aaPredicted RBP11□□□□□ -0.65
COL6A3-201ENST00000295550 PALD1Q9ULE6 856 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 ADCY9O60503 1353 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 GAS8O95995 478 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 TRAF3IP1Q8TDR0 691 aaPredicted RBP11□□□□□ -0.65
COL6A3-201ENST00000295550 USP44Q9H0E7 712 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 A2ML1A8K2U0 1454 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11□□□□□ -0.65
COL6A3-201ENST00000295550 TXNDC9O14530 226 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 RIOK3O14730 519 aaKnown RBP11□□□□□ -0.65
COL6A3-201ENST00000295550 MUM1Q2TAK8 710 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 SLC52A2Q9HAB3 445 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms