RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 CICQ96RK0 1608 aaPredicted RBP21.2■□□□□ 0.98
SHKBP1-201ENST00000291842 TNKSO95271 1327 aa21.2■□□□□ 0.98
SHKBP1-201ENST00000291842 MMP1P03956 469 aa21.19■□□□□ 0.98
SHKBP1-201ENST00000291842 EVX2Q03828 476 aa21.19■□□□□ 0.98
SHKBP1-201ENST00000291842 JMYQ8N9B5 988 aa21.19■□□□□ 0.98
SHKBP1-201ENST00000291842 C8orf37Q96NL8 207 aa21.19■□□□□ 0.98
SHKBP1-201ENST00000291842 TFCP2L1Q9NZI6 479 aa21.19■□□□□ 0.98
SHKBP1-201ENST00000291842 NR5A1Q13285 461 aa21.19■□□□□ 0.98
SHKBP1-201ENST00000291842 LRRC8AQ8IWT6 810 aa21.19■□□□□ 0.98
SHKBP1-201ENST00000291842 CRACR2BQ8N4Y2 399 aaPredicted RBP21.19■□□□□ 0.98
SHKBP1-201ENST00000291842 C16orf45Q96MC5 204 aaPredicted RBP21.19■□□□□ 0.98
SHKBP1-201ENST00000291842 JAG2Q9Y219 1238 aa21.19■□□□□ 0.98
SHKBP1-201ENST00000291842 ATP2B1P20020 1258 aa21.18■□□□□ 0.98
SHKBP1-201ENST00000291842 TOB1P50616 345 aaPredicted RBP21.18■□□□□ 0.98
SHKBP1-201ENST00000291842 NLRP12P59046 1061 aa21.18■□□□□ 0.98
SHKBP1-201ENST00000291842 PNOCQ13519 176 aa21.18■□□□□ 0.98
SHKBP1-201ENST00000291842 RGS22Q8NE09 1264 aa21.18■□□□□ 0.98
SHKBP1-201ENST00000291842 WASF1Q92558 559 aa21.18■□□□□ 0.98
SHKBP1-201ENST00000291842 HPSEQ9Y251 543 aa21.18■□□□□ 0.98
SHKBP1-201ENST00000291842 COL5A3P25940 1745 aaPredicted RBP21.18■□□□□ 0.98
SHKBP1-201ENST00000291842 hCG_1642624A0A1W2PR95 340 aa21.18■□□□□ 0.98
SHKBP1-201ENST00000291842 ESR2Q92731 530 aa21.18■□□□□ 0.98
SHKBP1-201ENST00000291842 SAFBQ15424 915 aaKnown RBP eCLIP21.17■□□□□ 0.98
SHKBP1-201ENST00000291842 RESP18Q5W5W9 173 aa21.17■□□□□ 0.98
SHKBP1-201ENST00000291842 OXER1Q8TDS5 423 aa21.17■□□□□ 0.98
SHKBP1-201ENST00000291842 GRIN1Q05586 938 aa21.17■□□□□ 0.98
SHKBP1-201ENST00000291842 SEC23AQ15436 765 aa21.17■□□□□ 0.98
SHKBP1-201ENST00000291842 LONRF3Q496Y0 759 aa21.17■□□□□ 0.98
SHKBP1-201ENST00000291842 TMTC2Q8N394 836 aa21.17■□□□□ 0.98
SHKBP1-201ENST00000291842 NGLY1Q96IV0 654 aa21.17■□□□□ 0.98
SHKBP1-201ENST00000291842 BAZ2AQ9UIF9 1905 aaKnown RBP21.16■□□□□ 0.98
SHKBP1-201ENST00000291842 RBM6P78332 1123 aaKnown RBP21.16■□□□□ 0.98
SHKBP1-201ENST00000291842 NBPF5PQ86XG9 351 aaPredicted RBP21.16■□□□□ 0.98
SHKBP1-201ENST00000291842 SMC2O95347 1197 aa21.16■□□□□ 0.98
SHKBP1-201ENST00000291842 DEXIO95424 95 aa21.16■□□□□ 0.98
SHKBP1-201ENST00000291842 RPS8P62241 208 aaKnown RBP21.16■□□□□ 0.98
SHKBP1-201ENST00000291842 CHAF1AQ13111 956 aaPredicted RBP21.16■□□□□ 0.98
SHKBP1-201ENST00000291842 AMIGO3Q86WK7 504 aa21.16■□□□□ 0.98
SHKBP1-201ENST00000291842 ENAHQ8N8S7 591 aaPredicted RBP21.16■□□□□ 0.98
SHKBP1-201ENST00000291842 SETDB2Q96T68 719 aa21.16■□□□□ 0.98
SHKBP1-201ENST00000291842 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.16■□□□□ 0.98
SHKBP1-201ENST00000291842 CCDC196A0A1B0GTZ2 297 aa21.15■□□□□ 0.98
SHKBP1-201ENST00000291842 GNPATO15228 680 aa21.15■□□□□ 0.98
SHKBP1-201ENST00000291842 SLC51AQ86UW1 340 aa21.15■□□□□ 0.98
SHKBP1-201ENST00000291842 IFNKQ9P0W0 207 aa21.15■□□□□ 0.98
SHKBP1-201ENST00000291842 ANAPC4Q9UJX5 808 aa21.15■□□□□ 0.98
SHKBP1-201ENST00000291842 KCNH3Q9ULD8 1083 aa21.15■□□□□ 0.98
SHKBP1-201ENST00000291842 NID2Q14112 1375 aa21.15■□□□□ 0.98
SHKBP1-201ENST00000291842 CACNA1SQ13698 1873 aa21.15■□□□□ 0.98
SHKBP1-201ENST00000291842 CUTAO60888 179 aa21.15■□□□□ 0.98
SHKBP1-201ENST00000291842 TIGD1Q96MW7 591 aa21.15■□□□□ 0.98
SHKBP1-201ENST00000291842 ZSCAN10Q96SZ4 725 aaPredicted RBP21.15■□□□□ 0.98
SHKBP1-201ENST00000291842 XPO4Q9C0E2 1151 aaKnown RBP21.15■□□□□ 0.98
SHKBP1-201ENST00000291842 AATFQ9NY61 560 aaKnown RBP eCLIP21.15■□□□□ 0.98
SHKBP1-201ENST00000291842 PCDHB6Q9Y5E3 794 aa21.15■□□□□ 0.98
SHKBP1-201ENST00000291842 MYH2Q9UKX2 1941 aa21.14■□□□□ 0.98
SHKBP1-201ENST00000291842 USP17L12C9JPN9 530 aa21.14■□□□□ 0.97
SHKBP1-201ENST00000291842 USP17L21D6R901 530 aa21.14■□□□□ 0.97
SHKBP1-201ENST00000291842 RIOK3O14730 519 aaKnown RBP21.14■□□□□ 0.97
SHKBP1-201ENST00000291842 FOXN1O15353 648 aa21.14■□□□□ 0.97
SHKBP1-201ENST00000291842 LMOD1P29536 600 aaPredicted RBP21.14■□□□□ 0.97
SHKBP1-201ENST00000291842 SLC4A8Q2Y0W8 1093 aa21.14■□□□□ 0.97
SHKBP1-201ENST00000291842 CTR9Q6PD62 1173 aa21.14■□□□□ 0.97
SHKBP1-201ENST00000291842 METTL16Q86W50 562 aaKnown RBP21.14■□□□□ 0.97
SHKBP1-201ENST00000291842 KRI1Q8N9T8 703 aaKnown RBP21.14■□□□□ 0.97
SHKBP1-201ENST00000291842 NLRP3Q96P20 1036 aa21.14■□□□□ 0.97
SHKBP1-201ENST00000291842 ARID3AQ99856 593 aa21.14■□□□□ 0.97
SHKBP1-201ENST00000291842 LTBP4Q8N2S1 1624 aa21.14■□□□□ 0.97
SHKBP1-201ENST00000291842 CASZ1Q86V15 1759 aa21.14■□□□□ 0.97
SHKBP1-201ENST00000291842 SKILP12757 684 aa21.14■□□□□ 0.97
SHKBP1-201ENST00000291842 MECOMQ03112 1051 aa21.14■□□□□ 0.97
SHKBP1-201ENST00000291842 NCAPHQ15003 741 aa21.14■□□□□ 0.97
SHKBP1-201ENST00000291842 SLC10A5Q5PT55 438 aa21.14■□□□□ 0.97
SHKBP1-201ENST00000291842 FBXO33Q7Z6M2 555 aa21.14■□□□□ 0.97
SHKBP1-201ENST00000291842 SHISA4Q96DD7 197 aa21.14■□□□□ 0.97
SHKBP1-201ENST00000291842 BPIFA3Q9BQP9 254 aa21.14■□□□□ 0.97
SHKBP1-201ENST00000291842 VPS54Q9P1Q0 977 aa21.14■□□□□ 0.97
SHKBP1-201ENST00000291842 ZPR1O75312 459 aa21.13■□□□□ 0.97
SHKBP1-201ENST00000291842 PRDX5P30044 214 aa21.13■□□□□ 0.97
SHKBP1-201ENST00000291842 TPD52L1Q16890 204 aaPredicted RBP21.13■□□□□ 0.97
SHKBP1-201ENST00000291842 TXNRD3Q86VQ6 643 aa21.13■□□□□ 0.97
SHKBP1-201ENST00000291842 FOXP4Q8IVH2 680 aaPredicted RBP21.13■□□□□ 0.97
SHKBP1-201ENST00000291842 CNNM3Q8NE01 707 aa21.13■□□□□ 0.97
SHKBP1-201ENST00000291842 NSUN4Q96CB9 384 aaKnown RBP21.13■□□□□ 0.97
SHKBP1-201ENST00000291842 CABP5Q9NP86 173 aa21.13■□□□□ 0.97
SHKBP1-201ENST00000291842 NARFQ9UHQ1 456 aa21.13■□□□□ 0.97
SHKBP1-201ENST00000291842 CNTNAP4Q9C0A0 1308 aa21.13■□□□□ 0.97
SHKBP1-201ENST00000291842 A0A1B0GUL6 1792 aa21.13■□□□□ 0.97
SHKBP1-201ENST00000291842 FAM205CA6NFA0 338 aa21.12■□□□□ 0.97
SHKBP1-201ENST00000291842 USP27XA6NNY8 438 aa21.12■□□□□ 0.97
SHKBP1-201ENST00000291842 PLEKHA8P1O95397 391 aa21.12■□□□□ 0.97
SHKBP1-201ENST00000291842 IFIT1BQ5T764 474 aaKnown RBP21.12■□□□□ 0.97
SHKBP1-201ENST00000291842 PDCL3Q9H2J4 239 aa21.12■□□□□ 0.97
SHKBP1-201ENST00000291842 FOXP1Q9H334 677 aaPredicted RBP21.12■□□□□ 0.97
SHKBP1-201ENST00000291842 TUBE1Q9UJT0 475 aa21.12■□□□□ 0.97
SHKBP1-201ENST00000291842 NMT2O60551 498 aa21.12■□□□□ 0.97
SHKBP1-201ENST00000291842 KRBA2Q6ZNG9 492 aa21.12■□□□□ 0.97
SHKBP1-201ENST00000291842 ATP1A3P13637 1013 aa21.11■□□□□ 0.97
SHKBP1-201ENST00000291842 HIBADHP31937 336 aaKnown RBP21.11■□□□□ 0.97
SHKBP1-201ENST00000291842 MTA3Q9BTC8 594 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms