RNA–Protein interactions for RNA: ENST00000284770.9

PDLIM3-202, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best) BASIC

Gene PDLIM3, Length 1,766 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-202ENST00000284770 DCAF8L1A6NGE4 600 aa22.35■■□□□ 1.17
PDLIM3-202ENST00000284770 GLTPD2A6NH11 291 aa22.35■■□□□ 1.17
PDLIM3-202ENST00000284770 TCP10L2B9ZVM9 353 aa22.35■■□□□ 1.17
PDLIM3-202ENST00000284770 EXOSC10Q01780 885 aaKnown RBP22.35■■□□□ 1.17
PDLIM3-202ENST00000284770 PDE4BQ07343 736 aa22.35■■□□□ 1.17
PDLIM3-202ENST00000284770 VEZTQ9HBM0 779 aa22.35■■□□□ 1.17
PDLIM3-202ENST00000284770 MYH1P12882 1939 aa22.35■■□□□ 1.17
PDLIM3-202ENST00000284770 B4E1Z4 1266 aa22.35■■□□□ 1.17
PDLIM3-202ENST00000284770 MCM5P33992 734 aa22.35■■□□□ 1.17
PDLIM3-202ENST00000284770 DYNLL2Q96FJ2 89 aa22.35■■□□□ 1.17
PDLIM3-202ENST00000284770 ALDH8A1Q9H2A2 487 aaPredicted RBP22.35■■□□□ 1.17
PDLIM3-202ENST00000284770 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.35■■□□□ 1.17
PDLIM3-202ENST00000284770 ORC4O43929 436 aa22.34■■□□□ 1.17
PDLIM3-202ENST00000284770 HLA-DOAP06340 250 aa22.34■■□□□ 1.17
PDLIM3-202ENST00000284770 FAM83AQ86UY5 434 aa22.34■■□□□ 1.17
PDLIM3-202ENST00000284770 TRPM4Q8TD43 1214 aa22.34■■□□□ 1.17
PDLIM3-202ENST00000284770 FAM151AQ8WW52 585 aa22.34■■□□□ 1.17
PDLIM3-202ENST00000284770 TOMM22Q9NS69 142 aa22.34■■□□□ 1.17
PDLIM3-202ENST00000284770 COL2A1P02458 1487 aaPredicted RBP22.33■■□□□ 1.17
PDLIM3-202ENST00000284770 ATRNL1Q5VV63 1379 aa22.33■■□□□ 1.17
PDLIM3-202ENST00000284770 K7ELQ4 463 aaPredicted RBP22.33■■□□□ 1.17
PDLIM3-202ENST00000284770 RRP12Q5JTH9 1297 aaKnown RBP22.33■■□□□ 1.17
PDLIM3-202ENST00000284770 C16orf86Q6ZW13 317 aa22.33■■□□□ 1.17
PDLIM3-202ENST00000284770 SH3BP5LQ7L8J4 393 aa22.33■■□□□ 1.17
PDLIM3-202ENST00000284770 NKX2-3Q8TAU0 364 aa22.33■■□□□ 1.17
PDLIM3-202ENST00000284770 TCEANC2Q96MN5 208 aa22.33■■□□□ 1.17
PDLIM3-202ENST00000284770 ZNF287Q9HBT7 754 aa22.33■■□□□ 1.17
PDLIM3-202ENST00000284770 ADARB2Q9NS39 739 aaKnown RBP22.33■■□□□ 1.17
PDLIM3-202ENST00000284770 CNTNAP1P78357 1384 aa22.33■■□□□ 1.16
PDLIM3-202ENST00000284770 WDR19Q8NEZ3 1342 aa22.33■■□□□ 1.16
PDLIM3-202ENST00000284770 DDTLA6NHG4 134 aaPredicted RBP22.33■■□□□ 1.16
PDLIM3-202ENST00000284770 KDM4AO75164 1064 aa22.33■■□□□ 1.16
PDLIM3-202ENST00000284770 PRDM1O75626 825 aa22.33■■□□□ 1.16
PDLIM3-202ENST00000284770 MCM2P49736 904 aa22.33■■□□□ 1.16
PDLIM3-202ENST00000284770 ZSCAN29Q8IWY8 852 aaPredicted RBP22.33■■□□□ 1.16
PDLIM3-202ENST00000284770 ESR2Q92731 530 aa22.33■■□□□ 1.16
PDLIM3-202ENST00000284770 EHD4Q9H223 541 aa22.33■■□□□ 1.16
PDLIM3-202ENST00000284770 ZSWIM5Q9P217 1185 aa22.33■■□□□ 1.16
PDLIM3-202ENST00000284770 PI4KBQ9UBF8 816 aa22.33■■□□□ 1.16
PDLIM3-202ENST00000284770 NT5C2P49902 561 aa22.32■■□□□ 1.16
PDLIM3-202ENST00000284770 AK2P54819 239 aa22.32■■□□□ 1.16
PDLIM3-202ENST00000284770 ANTXR2P58335 489 aa22.32■■□□□ 1.16
PDLIM3-202ENST00000284770 GABPAQ06546 454 aa22.32■■□□□ 1.16
PDLIM3-202ENST00000284770 TNFAIP1Q13829 316 aa22.32■■□□□ 1.16
PDLIM3-202ENST00000284770 CHST3Q7LGC8 479 aa22.32■■□□□ 1.16
PDLIM3-202ENST00000284770 SERPINB13Q9UIV8 391 aa22.32■■□□□ 1.16
PDLIM3-202ENST00000284770 HACL1Q9UJ83 578 aa22.32■■□□□ 1.16
PDLIM3-202ENST00000284770 PRC1O43663 620 aa22.31■■□□□ 1.16
PDLIM3-202ENST00000284770 TNNI2P48788 182 aa22.31■■□□□ 1.16
PDLIM3-202ENST00000284770 CDK8P49336 464 aa22.31■■□□□ 1.16
PDLIM3-202ENST00000284770 HIRAP54198 1017 aaPredicted RBP22.31■■□□□ 1.16
PDLIM3-202ENST00000284770 CYB5R4Q7L1T6 521 aa22.31■■□□□ 1.16
PDLIM3-202ENST00000284770 FBXL16Q8N461 479 aa22.31■■□□□ 1.16
PDLIM3-202ENST00000284770 MKNK2Q9HBH9 465 aa22.31■■□□□ 1.16
PDLIM3-202ENST00000284770 ASTN2O75129 1339 aaPredicted RBP22.31■■□□□ 1.16
PDLIM3-202ENST00000284770 ANKRD1Q15327 319 aa22.3■■□□□ 1.16
PDLIM3-202ENST00000284770 Q6ZUG5 572 aa22.3■■□□□ 1.16
PDLIM3-202ENST00000284770 SLC44A5Q8NCS7 719 aa22.3■■□□□ 1.16
PDLIM3-202ENST00000284770 TAOK2Q9UL54 1235 aa22.3■■□□□ 1.16
PDLIM3-202ENST00000284770 RANBP6O60518 1105 aaKnown RBP22.3■■□□□ 1.16
PDLIM3-202ENST00000284770 TOB2Q14106 344 aaPredicted RBP22.3■■□□□ 1.16
PDLIM3-202ENST00000284770 FOXP4Q8IVH2 680 aaPredicted RBP22.3■■□□□ 1.16
PDLIM3-202ENST00000284770 LRRC2Q9BYS8 371 aa22.3■■□□□ 1.16
PDLIM3-202ENST00000284770 AGXT2Q9BYV1 514 aa22.3■■□□□ 1.16
PDLIM3-202ENST00000284770 SWAP70Q9UH65 585 aa22.3■■□□□ 1.16
PDLIM3-202ENST00000284770 FGD1P98174 961 aa22.29■■□□□ 1.16
PDLIM3-202ENST00000284770 TMEM39BQ9GZU3 492 aa22.29■■□□□ 1.16
PDLIM3-202ENST00000284770 RASA3Q14644 834 aa22.28■■□□□ 1.16
PDLIM3-202ENST00000284770 ANGEL2Q5VTE6 544 aaKnown RBP22.28■■□□□ 1.16
PDLIM3-202ENST00000284770 METTL16Q86W50 562 aaKnown RBP22.28■■□□□ 1.16
PDLIM3-202ENST00000284770 ZNF444Q8N0Y2 327 aaPredicted RBP22.28■■□□□ 1.16
PDLIM3-202ENST00000284770 TMEM87BQ96K49 555 aa22.28■■□□□ 1.16
PDLIM3-202ENST00000284770 CSRNP1Q96S65 589 aa22.28■■□□□ 1.16
PDLIM3-202ENST00000284770 MTA3Q9BTC8 594 aa22.28■■□□□ 1.16
PDLIM3-202ENST00000284770 RASA1P20936 1047 aa22.27■■□□□ 1.16
PDLIM3-202ENST00000284770 CRACR2BQ8N4Y2 399 aaPredicted RBP22.27■■□□□ 1.16
PDLIM3-202ENST00000284770 PGAP2Q9UHJ9 254 aa22.27■■□□□ 1.16
PDLIM3-202ENST00000284770 LIMCH1Q9UPQ0 1083 aa22.27■■□□□ 1.16
PDLIM3-202ENST00000284770 IQCA1LA6NCM1 817 aa22.27■■□□□ 1.16
PDLIM3-202ENST00000284770 USP50Q70EL3 339 aaPredicted RBP22.27■■□□□ 1.16
PDLIM3-202ENST00000284770 NOL8Q76FK4 1167 aaKnown RBP22.27■■□□□ 1.16
PDLIM3-202ENST00000284770 APOBEC3FQ8IUX4 373 aaKnown RBP22.27■■□□□ 1.16
PDLIM3-202ENST00000284770 IGDCC4Q8TDY8 1250 aa22.27■■□□□ 1.16
PDLIM3-202ENST00000284770 TSPY2A6NKD2 308 aa22.26■■□□□ 1.15
PDLIM3-202ENST00000284770 EPHX2P34913 555 aa22.26■■□□□ 1.15
PDLIM3-202ENST00000284770 FAM47AQ5JRC9 791 aa22.26■■□□□ 1.15
PDLIM3-202ENST00000284770 BRF1Q92994 677 aa22.26■■□□□ 1.15
PDLIM3-202ENST00000284770 DEFB129Q9H1M3 183 aa22.26■■□□□ 1.15
PDLIM3-202ENST00000284770 SCAF8Q9UPN6 1271 aaKnown RBP22.26■■□□□ 1.15
PDLIM3-202ENST00000284770 SHMT1P34896 483 aa22.25■■□□□ 1.15
PDLIM3-202ENST00000284770 TFAP4Q01664 338 aa22.25■■□□□ 1.15
PDLIM3-202ENST00000284770 SART3Q15020 963 aaKnown RBP22.25■■□□□ 1.15
PDLIM3-202ENST00000284770 IQCA1Q86XH1 822 aa22.25■■□□□ 1.15
PDLIM3-202ENST00000284770 LARP6Q9BRS8 491 aaKnown RBP22.25■■□□□ 1.15
PDLIM3-202ENST00000284770 TRIM34Q9BYJ4 488 aa22.25■■□□□ 1.15
PDLIM3-202ENST00000284770 DNAJC18Q9H819 358 aa22.25■■□□□ 1.15
PDLIM3-202ENST00000284770 GGA3Q9NZ52 723 aa22.25■■□□□ 1.15
PDLIM3-202ENST00000284770 ANGEL1Q9UNK9 670 aaKnown RBP22.25■■□□□ 1.15
PDLIM3-202ENST00000284770 PITPNM2Q9BZ72 1349 aa22.25■■□□□ 1.15
PDLIM3-202ENST00000284770 SH2B2O14492 632 aaPredicted RBP22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms