RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 GNA14O95837 355 aa8.88□□□□□ -0.99
LIMD1-201ENST00000273317 STMN1P16949 149 aa8.88□□□□□ -0.99
LIMD1-201ENST00000273317 SHROOM2Q13796 1616 aa8.88□□□□□ -0.99
LIMD1-201ENST00000273317 TNFAIP3P21580 790 aa8.88□□□□□ -0.99
LIMD1-201ENST00000273317 CCT6AP40227 531 aaKnown RBP8.88□□□□□ -0.99
LIMD1-201ENST00000273317 ZNF445P59923 1031 aa8.88□□□□□ -0.99
LIMD1-201ENST00000273317 ZKSCAN3Q9BRR0 538 aa8.88□□□□□ -0.99
LIMD1-201ENST00000273317 WHAMMP3Q1A5X7 153 aa8.88□□□□□ -0.99
LIMD1-201ENST00000273317 WDR70Q9NW82 654 aa8.88□□□□□ -0.99
LIMD1-201ENST00000273317 TRAPPC8Q9Y2L5 1435 aa8.88□□□□□ -0.99
LIMD1-201ENST00000273317 APOBRQ0VD83 1088 aa8.88□□□□□ -0.99
LIMD1-201ENST00000273317 TCHPQ9BT92 498 aa8.88□□□□□ -0.99
LIMD1-201ENST00000273317 GOLGA4Q13439 2230 aaKnown RBP8.88□□□□□ -0.99
LIMD1-201ENST00000273317 LEO1Q8WVC0 666 aaPredicted RBP8.87□□□□□ -0.99
LIMD1-201ENST00000273317 VWA3AA6NCI4 1184 aa8.87□□□□□ -0.99
LIMD1-201ENST00000273317 SLC9C1Q4G0N8 1177 aa8.87□□□□□ -0.99
LIMD1-201ENST00000273317 HHATQ5VTY9 493 aa8.87□□□□□ -0.99
LIMD1-201ENST00000273317 TLDC2A0PJX2 215 aa8.87□□□□□ -0.99
LIMD1-201ENST00000273317 PPFIA3O75145 1194 aa8.87□□□□□ -0.99
LIMD1-201ENST00000273317 CCDC84Q86UT8 332 aaPredicted RBP8.87□□□□□ -0.99
LIMD1-201ENST00000273317 PFDN4Q9NQP4 134 aa8.87□□□□□ -0.99
LIMD1-201ENST00000273317 KCNG1Q9UIX4 513 aa8.87□□□□□ -0.99
LIMD1-201ENST00000273317 BLMP54132 1417 aaPredicted RBP8.87□□□□□ -0.99
LIMD1-201ENST00000273317 LDHBP07195 334 aaKnown RBP8.87□□□□□ -0.99
LIMD1-201ENST00000273317 ATP2A3Q93084 1043 aa8.87□□□□□ -0.99
LIMD1-201ENST00000273317 FANCCQ00597 558 aa8.87□□□□□ -0.99
LIMD1-201ENST00000273317 Q9H521 79 aa8.87□□□□□ -0.99
LIMD1-201ENST00000273317 ACEP12821 1306 aa8.87□□□□□ -0.99
LIMD1-201ENST00000273317 GIPC1O14908 333 aa8.87□□□□□ -0.99
LIMD1-201ENST00000273317 EYA3Q99504 573 aa8.87□□□□□ -0.99
LIMD1-201ENST00000273317 FAM83GA6ND36 823 aa8.87□□□□□ -0.99
LIMD1-201ENST00000273317 SFMBT2Q5VUG0 894 aa8.87□□□□□ -0.99
LIMD1-201ENST00000273317 CACYBPQ9HB71 228 aaKnown RBP8.87□□□□□ -0.99
LIMD1-201ENST00000273317 SF3A3Q12874 501 aaKnown RBP eCLIP8.87□□□□□ -0.99
LIMD1-201ENST00000273317 RNF10Q8N5U6 811 aaKnown RBP8.87□□□□□ -0.99
LIMD1-201ENST00000273317 NPC1L1Q9UHC9 1359 aa8.87□□□□□ -0.99
LIMD1-201ENST00000273317 TBC1D8BQ0IIM8 1120 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 MED4Q9NPJ6 270 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 ANGEL1Q9UNK9 670 aaKnown RBP8.86□□□□□ -0.99
LIMD1-201ENST00000273317 PCDH11XQ9BZA7 1347 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 PCDH11YQ9BZA8 1340 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 ZNF131P52739 623 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 UAP1Q16222 522 aaPredicted RBP8.86□□□□□ -0.99
LIMD1-201ENST00000273317 CCDC125Q86Z20 511 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 GBP5Q96PP8 586 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 HOXB7P09629 217 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 CADPS2Q86UW7 1296 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 A2MP01023 1474 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 BIRC3Q13489 604 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 KRT25Q7Z3Z0 450 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 CCDC89Q8N998 374 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 NLRP3Q96P20 1036 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 MCM9Q9NXL9 1143 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 TACC3Q9Y6A5 838 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 SLC8A1P32418 973 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 GOLGA8KD6RF30 607 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 DENND2AQ9ULE3 1009 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 PHBP35232 272 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 STX17P56962 302 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 PHLDB3Q6NSJ2 640 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 HVCN1Q96D96 273 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 FNBP1Q96RU3 617 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 HAUS8Q9BT25 410 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 DMRT2Q9Y5R5 561 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 MAST3O60307 1309 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 BCRP11274 1271 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 KRT28Q7Z3Y7 464 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 SDCCAG8Q86SQ7 713 aaPredicted RBP8.86□□□□□ -0.99
LIMD1-201ENST00000273317 ZBTB40Q9NUA8 1239 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 ADAMTS12P58397 1594 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 SEPT14Q6ZU15 432 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 RABEP2Q9H5N1 569 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 TMOD4Q9NZQ9 345 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 YTHDC2Q9H6S0 1430 aaKnown RBP8.86□□□□□ -0.99
LIMD1-201ENST00000273317 KDM3AQ9Y4C1 1321 aa8.86□□□□□ -0.99
LIMD1-201ENST00000273317 PPP4R1Q8TF05 950 aa8.85□□□□□ -0.99
LIMD1-201ENST00000273317 KDM2BQ8NHM5 1336 aa8.85□□□□□ -0.99
LIMD1-201ENST00000273317 GEN1Q17RS7 908 aa8.85□□□□□ -0.99
LIMD1-201ENST00000273317 RUNDC3BQ96NL0 473 aa8.85□□□□□ -0.99
LIMD1-201ENST00000273317 FAN1Q9Y2M0 1017 aa8.85□□□□□ -0.99
LIMD1-201ENST00000273317 PUM3Q15397 648 aaKnown RBP8.85□□□□□ -0.99
LIMD1-201ENST00000273317 ELF2Q15723 593 aa8.85□□□□□ -0.99
LIMD1-201ENST00000273317 PRPF31Q8WWY3 499 aaKnown RBP8.85□□□□□ -0.99
LIMD1-201ENST00000273317 HOOK2Q96ED9 719 aa8.85□□□□□ -0.99
LIMD1-201ENST00000273317 NCAPGQ9BPX3 1015 aa8.85□□□□□ -0.99
LIMD1-201ENST00000273317 IFIH1Q9BYX4 1025 aaKnown RBP8.85□□□□□ -0.99
LIMD1-201ENST00000273317 SYNMO15061 1565 aa8.85□□□□□ -0.99
LIMD1-201ENST00000273317 MYCNP04198 464 aaPredicted RBP8.85□□□□□ -0.99
LIMD1-201ENST00000273317 TAF12Q16514 161 aa8.85□□□□□ -0.99
LIMD1-201ENST00000273317 CSGALNACT2Q8N6G5 542 aa8.85□□□□□ -0.99
LIMD1-201ENST00000273317 ARHGEF2Q92974 986 aaKnown RBP8.85□□□□□ -0.99
LIMD1-201ENST00000273317 P4HA1P13674 534 aa8.85□□□□□ -0.99
LIMD1-201ENST00000273317 STRN3Q13033 797 aa8.85□□□□□ -0.99
LIMD1-201ENST00000273317 ZCRB1Q8TBF4 217 aaKnown RBP8.85□□□□□ -0.99
LIMD1-201ENST00000273317 N4BP1O75113 896 aaKnown RBP8.85□□□□□ -0.99
LIMD1-201ENST00000273317 ARHGEF10LQ9HCE6 1279 aa8.85□□□□□ -0.99
LIMD1-201ENST00000273317 THEGQ9P2T0 379 aa8.85□□□□□ -0.99
LIMD1-201ENST00000273317 ATP6V1AP38606 617 aa8.85□□□□□ -0.99
LIMD1-201ENST00000273317 PLS1Q14651 629 aa8.85□□□□□ -0.99
LIMD1-201ENST00000273317 GRK7Q8WTQ7 553 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms